RNA–Protein interactions for RNA: ENST00000540960.1

CHD4-208, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 5

Gene CHD4, Length 892 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-208ENST00000540960 ADCY6O43306 1168 aa9.71□□□□□ -0.86
CHD4-208ENST00000540960 GALR2O43603 387 aaPredicted RBP9.71□□□□□ -0.86
CHD4-208ENST00000540960 STRNO43815 780 aa9.71□□□□□ -0.86
CHD4-208ENST00000540960 GDF11O95390 407 aa9.71□□□□□ -0.86
CHD4-208ENST00000540960 BRD1O95696 1058 aa9.71□□□□□ -0.86
CHD4-208ENST00000540960 MBD3O95983 291 aa9.71□□□□□ -0.86
CHD4-208ENST00000540960 AKR1A1P14550 325 aa9.71□□□□□ -0.86
CHD4-208ENST00000540960 CYP7A1P22680 504 aa9.71□□□□□ -0.86
CHD4-208ENST00000540960 LTBRP36941 435 aa9.71□□□□□ -0.86
CHD4-208ENST00000540960 RHBDL3P58872 404 aa9.71□□□□□ -0.86
CHD4-208ENST00000540960 CLUL1Q15846 466 aa9.71□□□□□ -0.86
CHD4-208ENST00000540960 CCDC178Q5BJE1 867 aa9.71□□□□□ -0.86
CHD4-208ENST00000540960 USP17L2Q6R6M4 530 aa9.71□□□□□ -0.86
CHD4-208ENST00000540960 SYNE3Q6ZMZ3 975 aa9.71□□□□□ -0.86
CHD4-208ENST00000540960 KIAA2013Q8IYS2 634 aa9.71□□□□□ -0.86
CHD4-208ENST00000540960 SEC62Q99442 399 aaKnown RBP9.71□□□□□ -0.86
CHD4-208ENST00000540960 AGXT2Q9BYV1 514 aa9.71□□□□□ -0.86
CHD4-208ENST00000540960 CRNKL1Q9BZJ0 848 aaKnown RBP9.71□□□□□ -0.86
CHD4-208ENST00000540960 ZNF287Q9HBT7 754 aa9.71□□□□□ -0.86
CHD4-208ENST00000540960 CCDC196A0A1B0GTZ2 297 aa9.7□□□□□ -0.86
CHD4-208ENST00000540960 ERICH2A1L162 156 aa9.7□□□□□ -0.86
CHD4-208ENST00000540960 PFKFB2O60825 505 aa9.7□□□□□ -0.86
CHD4-208ENST00000540960 PGK2P07205 417 aa9.7□□□□□ -0.86
CHD4-208ENST00000540960 BTDP43251 543 aa9.7□□□□□ -0.86
CHD4-208ENST00000540960 TDO2P48775 406 aa9.7□□□□□ -0.86
CHD4-208ENST00000540960 RCAN1P53805 252 aa9.7□□□□□ -0.86
CHD4-208ENST00000540960 EVCP57679 992 aa9.7□□□□□ -0.86
CHD4-208ENST00000540960 EXOSC10Q01780 885 aaKnown RBP9.7□□□□□ -0.86
CHD4-208ENST00000540960 PUM1Q14671 1186 aaKnown RBP eCLIP9.7□□□□□ -0.861e-6■■□□□ 12.6
CHD4-208ENST00000540960 SMAD2Q15796 467 aaKnown RBP9.7□□□□□ -0.86
CHD4-208ENST00000540960 ADCK5Q3MIX3 580 aa9.7□□□□□ -0.86
CHD4-208ENST00000540960 ATL3Q6DD88 541 aa9.7□□□□□ -0.86
CHD4-208ENST00000540960 LBX2Q6XYB7 198 aa9.7□□□□□ -0.86
CHD4-208ENST00000540960 Q6ZUG5 572 aa9.7□□□□□ -0.86
CHD4-208ENST00000540960 FAM184AQ8NB25 1140 aa9.7□□□□□ -0.86
CHD4-208ENST00000540960 SYAP1Q96A49 352 aaPredicted RBP9.7□□□□□ -0.86
CHD4-208ENST00000540960 SLC9A7Q96T83 725 aa9.7□□□□□ -0.86
CHD4-208ENST00000540960 PUS7LQ9H0K6 701 aaKnown RBP9.7□□□□□ -0.86
CHD4-208ENST00000540960 DNAJC18Q9H819 358 aa9.7□□□□□ -0.86
CHD4-208ENST00000540960 ATP8A2Q9NTI2 1148 aa9.7□□□□□ -0.86
CHD4-208ENST00000540960 ABCF2Q9UG63 623 aa9.7□□□□□ -0.86
CHD4-208ENST00000540960 UNC79Q9P2D8 2635 aa9.69□□□□□ -0.86
CHD4-208ENST00000540960 GRIN2DO15399 1336 aa9.69□□□□□ -0.86
CHD4-208ENST00000540960 STX6O43752 255 aa9.69□□□□□ -0.86
CHD4-208ENST00000540960 TRAK2O60296 914 aa9.69□□□□□ -0.86
CHD4-208ENST00000540960 B4GALT4O60513 344 aa9.69□□□□□ -0.86
CHD4-208ENST00000540960 MBD4O95243 580 aa9.69□□□□□ -0.86
CHD4-208ENST00000540960 BAG4O95429 457 aaKnown RBP9.69□□□□□ -0.86
CHD4-208ENST00000540960 ASNSP08243 561 aa9.69□□□□□ -0.86
CHD4-208ENST00000540960 C6orf222P0C671 652 aaPredicted RBP9.69□□□□□ -0.86
CHD4-208ENST00000540960 ZSCAN22P10073 491 aaPredicted RBP9.69□□□□□ -0.86
CHD4-208ENST00000540960 DLX2Q07687 328 aaPredicted RBP9.69□□□□□ -0.86
CHD4-208ENST00000540960 GSE1Q14687 1217 aa9.69□□□□□ -0.86
CHD4-208ENST00000540960 ATG2AQ2TAZ0 1938 aa9.69□□□□□ -0.86
CHD4-208ENST00000540960 LARP1BQ659C4 914 aaKnown RBP9.69□□□□□ -0.86
CHD4-208ENST00000540960 MFSD6Q6ZSS7 791 aa9.69□□□□□ -0.86
CHD4-208ENST00000540960 DZIP1Q86YF9 867 aaKnown RBP9.69□□□□□ -0.86
CHD4-208ENST00000540960 SLC43A3Q8NBI5 491 aa9.69□□□□□ -0.86
CHD4-208ENST00000540960 PHOSPHO2Q8TCD6 241 aa9.69□□□□□ -0.86
CHD4-208ENST00000540960 ROBO3Q96MS0 1386 aa9.69□□□□□ -0.86
CHD4-208ENST00000540960 TINF2Q9BSI4 451 aa9.69□□□□□ -0.86
CHD4-208ENST00000540960 NRBP1Q9UHY1 535 aa9.69□□□□□ -0.86
CHD4-208ENST00000540960 SLC4A4Q9Y6R1 1079 aa9.69□□□□□ -0.86
CHD4-208ENST00000540960 KIF28PB7ZC32 967 aa9.68□□□□□ -0.86
CHD4-208ENST00000540960 CTAGE5O15320 804 aa9.68□□□□□ -0.86
CHD4-208ENST00000540960 MBTPS2O43462 519 aa9.68□□□□□ -0.86
CHD4-208ENST00000540960 VCAM1P19320 739 aa9.68□□□□□ -0.86
CHD4-208ENST00000540960 CST5P28325 142 aaPredicted RBP9.68□□□□□ -0.86
CHD4-208ENST00000540960 ERVK-21P61565 698 aa9.68□□□□□ -0.86
CHD4-208ENST00000540960 SIGLEC14Q08ET2 396 aa9.68□□□□□ -0.86
CHD4-208ENST00000540960 L1TD1Q5T7N2 865 aaKnown RBP9.68□□□□□ -0.86
CHD4-208ENST00000540960 NOL8Q76FK4 1167 aaKnown RBP9.68□□□□□ -0.86
CHD4-208ENST00000540960 CCDC83Q8IWF9 413 aa9.68□□□□□ -0.86
CHD4-208ENST00000540960 IFNL3Q8IZI9 196 aa9.68□□□□□ -0.86
CHD4-208ENST00000540960 WASF1Q92558 559 aa9.68□□□□□ -0.86
CHD4-208ENST00000540960 ESR2Q92731 530 aa9.68□□□□□ -0.86
CHD4-208ENST00000540960 GTF3C6Q969F1 213 aa9.68□□□□□ -0.86
CHD4-208ENST00000540960 PABPC5Q96DU9 382 aaKnown RBP9.68□□□□□ -0.86
CHD4-208ENST00000540960 SPATC1LQ9H0A9 340 aa9.68□□□□□ -0.86
CHD4-208ENST00000540960 ZSCAN16Q9H4T2 348 aaPredicted RBP9.68□□□□□ -0.86
CHD4-208ENST00000540960 SLC5A4Q9NY91 659 aa9.68□□□□□ -0.86
CHD4-208ENST00000540960 DLL3Q9NYJ7 618 aa9.68□□□□□ -0.86
CHD4-208ENST00000540960 ANAPC4Q9UJX5 808 aa9.68□□□□□ -0.86
CHD4-208ENST00000540960 TPCN1Q9ULQ1 816 aa9.68□□□□□ -0.86
CHD4-208ENST00000540960 FAM50BQ9Y247 325 aa9.68□□□□□ -0.86
CHD4-208ENST00000540960 ZFYVE26Q68DK2 2539 aa9.67□□□□□ -0.86
CHD4-208ENST00000540960 MCM3APO60318 1980 aa9.67□□□□□ -0.86
CHD4-208ENST00000540960 FLNBO75369 2602 aaKnown RBP9.67□□□□□ -0.86
CHD4-208ENST00000540960 H3BQV1 296 aa9.67□□□□□ -0.86
CHD4-208ENST00000540960 STXBP3O00186 592 aa9.67□□□□□ -0.86
CHD4-208ENST00000540960 CPLX1O14810 134 aa9.67□□□□□ -0.86
CHD4-208ENST00000540960 PRC1O43663 620 aa9.67□□□□□ -0.86
CHD4-208ENST00000540960 ZIC2O95409 532 aaPredicted RBP9.67□□□□□ -0.86
CHD4-208ENST00000540960 GJB2P29033 226 aa9.67□□□□□ -0.86
CHD4-208ENST00000540960 LIFRP42702 1097 aa9.67□□□□□ -0.86
CHD4-208ENST00000540960 BEX3Q00994 111 aa9.67□□□□□ -0.86
CHD4-208ENST00000540960 TOB2Q14106 344 aaPredicted RBP9.67□□□□□ -0.86
CHD4-208ENST00000540960 COL19A1Q14993 1142 aa9.67□□□□□ -0.86
CHD4-208ENST00000540960 ME3Q16798 604 aa9.67□□□□□ -0.86
CHD4-208ENST00000540960 KLHL40Q2TBA0 621 aa9.67□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms