RNA–Protein interactions for RNA: ENST00000540756.5

TTC3-225, Transcript of tetratricopeptide repeat domain 3, human

TSL 2 BASIC

Gene TTC3, Length 2,025 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TTC3-225	ENST00000540756	SH3RF1	Q7Z6J0	888 aa		27.74	■■■□□ 2.03
TTC3-225	ENST00000540756	OTUD5	Q96G74	571 aa		27.74	■■■□□ 2.03
TTC3-225	ENST00000540756	MMTAG2	Q9BU76	263 aa	Known RBP	27.74	■■■□□ 2.03
TTC3-225	ENST00000540756	CYP3A7-CYP3A51P	A0A087WV96	503 aa		27.74	■■■□□ 2.03
TTC3-225	ENST00000540756	IRF6	O14896	467 aa		27.74	■■■□□ 2.03
TTC3-225	ENST00000540756	GCFC2	P16383	781 aa	Known RBP	27.74	■■■□□ 2.03
TTC3-225	ENST00000540756	CYP3A7	P24462	503 aa		27.74	■■■□□ 2.03
TTC3-225	ENST00000540756	NF2	P35240	595 aa		27.74	■■■□□ 2.03
TTC3-225	ENST00000540756	NAALADL2	Q58DX5	795 aa		27.74	■■■□□ 2.03
TTC3-225	ENST00000540756	CATSPERG	Q6ZRH7	1159 aa		27.74	■■■□□ 2.03
TTC3-225	ENST00000540756	PNMA8A	Q86V59	439 aa	Predicted RBP	27.74	■■■□□ 2.03
TTC3-225	ENST00000540756	CEP57L1	Q8IYX8	460 aa		27.74	■■■□□ 2.03
TTC3-225	ENST00000540756	IQUB	Q8NA54	791 aa		27.74	■■■□□ 2.03
TTC3-225	ENST00000540756	ZFP91	Q96JP5	570 aa	Predicted RBP	27.74	■■■□□ 2.03
TTC3-225	ENST00000540756	TTC12	Q9H892	705 aa	Predicted RBP	27.74	■■■□□ 2.03
TTC3-225	ENST00000540756	RIPK3	Q9Y572	518 aa		27.74	■■■□□ 2.03
TTC3-225	ENST00000540756	PRR16	Q569H4	304 aa		27.73	■■■□□ 2.03
TTC3-225	ENST00000540756	LENG9	Q96B70	501 aa		27.73	■■■□□ 2.03
TTC3-225	ENST00000540756	MBOAT7	Q96N66	472 aa		27.73	■■■□□ 2.03
TTC3-225	ENST00000540756	DISC1	Q9NRI5	854 aa		27.73	■■■□□ 2.03
TTC3-225	ENST00000540756	COL20A1	Q9P218	1284 aa		27.73	■■■□□ 2.03
TTC3-225	ENST00000540756	AP5Z1	O43299	807 aa		27.72	■■■□□ 2.03
TTC3-225	ENST00000540756	BMP6	P22004	513 aa		27.72	■■■□□ 2.03
TTC3-225	ENST00000540756	DSG3	P32926	999 aa		27.72	■■■□□ 2.03
TTC3-225	ENST00000540756	TXLNA	P40222	546 aa		27.72	■■■□□ 2.03
TTC3-225	ENST00000540756	SH3D19	Q5HYK7	790 aa		27.72	■■■□□ 2.03
TTC3-225	ENST00000540756	CCSER1	Q9C0I3	900 aa		27.72	■■■□□ 2.03
TTC3-225	ENST00000540756	USP25	Q9UHP3	1055 aa		27.72	■■■□□ 2.03
TTC3-225	ENST00000540756	ZBED4	O75132	1171 aa		27.72	■■■□□ 2.03
TTC3-225	ENST00000540756	FXR2	P51116	673 aa	Known RBP eCLIP	27.72	■■■□□ 2.03	8e-8	■■■■□ 20.8
TTC3-225	ENST00000540756	NLRP12	P59046	1061 aa		27.72	■■■□□ 2.03
TTC3-225	ENST00000540756	IQCB1	Q15051	598 aa		27.72	■■■□□ 2.03
TTC3-225	ENST00000540756	MCTP2	Q6DN12	878 aa		27.72	■■■□□ 2.03
TTC3-225	ENST00000540756	CABP7	Q86V35	215 aa		27.72	■■■□□ 2.03
TTC3-225	ENST00000540756	ANKRD13A	Q8IZ07	590 aa		27.72	■■■□□ 2.03
TTC3-225	ENST00000540756	REPS2	Q8NFH8	660 aa		27.72	■■■□□ 2.03
TTC3-225	ENST00000540756	COG2	Q14746	738 aa		27.71	■■■□□ 2.03
TTC3-225	ENST00000540756	UVSSA	Q2YD98	709 aa		27.71	■■■□□ 2.03
TTC3-225	ENST00000540756	RASSF8	Q8NHQ8	419 aa		27.71	■■■□□ 2.03
TTC3-225	ENST00000540756	AK8	Q96MA6	479 aa		27.71	■■■□□ 2.03
TTC3-225	ENST00000540756	NUDT12	Q9BQG2	462 aa		27.71	■■■□□ 2.03
TTC3-225	ENST00000540756	KCNMB3	Q9NPA1	279 aa		27.71	■■■□□ 2.03
TTC3-225	ENST00000540756	CTDP1	Q9Y5B0	961 aa	Predicted RBP	27.71	■■■□□ 2.03
TTC3-225	ENST00000540756	STAT6	P42226	847 aa		27.7	■■■□□ 2.03
TTC3-225	ENST00000540756	SARS	P49591	514 aa	Known RBP	27.7	■■■□□ 2.03
TTC3-225	ENST00000540756	KANK3	Q6NY19	840 aa		27.7	■■■□□ 2.03
TTC3-225	ENST00000540756	BLZF1	Q9H2G9	400 aa		27.7	■■■□□ 2.03
TTC3-225	ENST00000540756	RRAGC	Q9HB90	399 aa		27.7	■■■□□ 2.03
TTC3-225	ENST00000540756	HOOK1	Q9UJC3	728 aa	Known RBP	27.7	■■■□□ 2.03
TTC3-225	ENST00000540756	MAN1B1	Q9UKM7	699 aa		27.7	■■■□□ 2.03
TTC3-225	ENST00000540756	ADAMTS5	Q9UNA0	930 aa		27.7	■■■□□ 2.03
TTC3-225	ENST00000540756	PEX10	O60683	326 aa		27.7	■■■□□ 2.02
TTC3-225	ENST00000540756	HSD17B4	P51659	736 aa		27.7	■■■□□ 2.02
TTC3-225	ENST00000540756	RBM46	Q8TBY0	533 aa	Known RBP	27.7	■■■□□ 2.02
TTC3-225	ENST00000540756	ZNF408	Q9H9D4	720 aa		27.7	■■■□□ 2.02
TTC3-225	ENST00000540756	LRWD1	Q9UFC0	647 aa		27.7	■■■□□ 2.02
TTC3-225	ENST00000540756	MARCH6	O60337	910 aa		27.69	■■■□□ 2.02
TTC3-225	ENST00000540756	PLCG1	P19174	1290 aa		27.69	■■■□□ 2.02
TTC3-225	ENST00000540756	NT5DC1	Q5TFE4	455 aa		27.69	■■■□□ 2.02
TTC3-225	ENST00000540756	RRAGB	Q5VZM2	374 aa		27.69	■■■□□ 2.02
TTC3-225	ENST00000540756	TMEM132B	Q14DG7	1078 aa		27.68	■■■□□ 2.02
TTC3-225	ENST00000540756	POTEE	Q6S8J3	1075 aa		27.68	■■■□□ 2.02
TTC3-225	ENST00000540756	MOXD1	Q6UVY6	613 aa		27.68	■■■□□ 2.02
TTC3-225	ENST00000540756	DHX40	Q8IX18	779 aa	Known RBP	27.68	■■■□□ 2.02
TTC3-225	ENST00000540756	SPATA20	Q8TB22	786 aa		27.68	■■■□□ 2.02
TTC3-225	ENST00000540756	ETNPPL	Q8TBG4	499 aa		27.68	■■■□□ 2.02
TTC3-225	ENST00000540756	TRERF1	Q96PN7	1200 aa		27.68	■■■□□ 2.02
TTC3-225	ENST00000540756	NAP1L4	Q99733	375 aa	Known RBP	27.68	■■■□□ 2.02
TTC3-225	ENST00000540756	ZNF214	Q9UL59	606 aa	Predicted RBP	27.68	■■■□□ 2.02
TTC3-225	ENST00000540756	SPDYE16	A6NNV3	312 aa	Predicted RBP	27.68	■■■□□ 2.02
TTC3-225	ENST00000540756	CYP3A4	P08684	503 aa		27.68	■■■□□ 2.02
TTC3-225	ENST00000540756	CIITA	P33076	1130 aa		27.68	■■■□□ 2.02
TTC3-225	ENST00000540756	PPAT	Q06203	517 aa		27.68	■■■□□ 2.02
TTC3-225	ENST00000540756	TMEM266	Q2M3C6	531 aa		27.68	■■■□□ 2.02
TTC3-225	ENST00000540756		Q4G0T1	1027 aa		27.68	■■■□□ 2.02
TTC3-225	ENST00000540756	ERO1B	Q86YB8	467 aa		27.68	■■■□□ 2.02
TTC3-225	ENST00000540756	SMARCE1	Q969G3	411 aa		27.68	■■■□□ 2.02
TTC3-225	ENST00000540756	PCDHA12	Q9UN75	941 aa		27.68	■■■□□ 2.02
TTC3-225	ENST00000540756	PLCB2	Q00722	1185 aa		27.67	■■■□□ 2.02
TTC3-225	ENST00000540756	DPYD	Q12882	1025 aa		27.67	■■■□□ 2.02
TTC3-225	ENST00000540756	CUL4B	Q13620	913 aa		27.67	■■■□□ 2.02
TTC3-225	ENST00000540756	SLC30A10	Q6XR72	485 aa		27.67	■■■□□ 2.02
TTC3-225	ENST00000540756	PURB	Q96QR8	312 aa	Known RBP	27.67	■■■□□ 2.02
TTC3-225	ENST00000540756	SPDYE5	A6NIY4	337 aa		27.67	■■■□□ 2.02
TTC3-225	ENST00000540756	ZNF76	P36508	570 aa		27.67	■■■□□ 2.02
TTC3-225	ENST00000540756	SNRNP48	Q6IEG0	339 aa	Known RBP	27.67	■■■□□ 2.02
TTC3-225	ENST00000540756	GADL1	Q6ZQY3	521 aa		27.67	■■■□□ 2.02
TTC3-225	ENST00000540756	ANP32B	Q92688	251 aa	Known RBP	27.67	■■■□□ 2.02
TTC3-225	ENST00000540756	IGLV3-22	A0A075B6J6	115 aa		27.66	■■■□□ 2.02
TTC3-225	ENST00000540756	STAT3	P40763	770 aa		27.66	■■■□□ 2.02
TTC3-225	ENST00000540756	PDIA5	Q14554	519 aa		27.66	■■■□□ 2.02
TTC3-225	ENST00000540756	CCDC39	Q9UFE4	941 aa		27.66	■■■□□ 2.02
TTC3-225	ENST00000540756	MSH4	O15457	936 aa		27.65	■■■□□ 2.02
TTC3-225	ENST00000540756	RPS6	P62753	249 aa	Known RBP	27.65	■■■□□ 2.02
TTC3-225	ENST00000540756	AOPEP	Q8N6M6	819 aa		27.65	■■■□□ 2.02
TTC3-225	ENST00000540756	OPTN	Q96CV9	577 aa		27.65	■■■□□ 2.02
TTC3-225	ENST00000540756	PNMA5	Q96PV4	448 aa		27.65	■■■□□ 2.02
TTC3-225	ENST00000540756		A0A0G2JLL6	359 aa	Predicted RBP	27.65	■■■□□ 2.02
TTC3-225	ENST00000540756	CAVIN2	O95810	425 aa		27.65	■■■□□ 2.02
TTC3-225	ENST00000540756	GRB10	Q13322	594 aa		27.65	■■■□□ 2.02

Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms