RNA–Protein interactions for RNA: ENST00000540669.1

VPS33A-204, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 455 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-204ENST00000540669 MCF2L2Q86YR7 1114 aa12.08□□□□□ -0.48
VPS33A-204ENST00000540669 ANO3Q9BYT9 981 aa12.08□□□□□ -0.48
VPS33A-204ENST00000540669 ZSCAN16Q9H4T2 348 aaPredicted RBP12.08□□□□□ -0.48
VPS33A-204ENST00000540669 TMEM260Q9NX78 707 aa12.08□□□□□ -0.48
VPS33A-204ENST00000540669 TSKSQ9UJT2 592 aa12.08□□□□□ -0.48
VPS33A-204ENST00000540669 GCOM1H8Y6P7 765 aaPredicted RBP12.07□□□□□ -0.48
VPS33A-204ENST00000540669 CYP3A4P08684 503 aa12.07□□□□□ -0.48
VPS33A-204ENST00000540669 POLR2MP0CAP2 368 aa12.07□□□□□ -0.48
VPS33A-204ENST00000540669 PTPREP23469 700 aa12.07□□□□□ -0.48
VPS33A-204ENST00000540669 CIITAP33076 1130 aa12.07□□□□□ -0.48
VPS33A-204ENST00000540669 FOSBP53539 338 aa12.07□□□□□ -0.48
VPS33A-204ENST00000540669 ORC2Q13416 577 aaPredicted RBP12.07□□□□□ -0.48
VPS33A-204ENST00000540669 ZNF792Q3KQV3 632 aa12.07□□□□□ -0.48
VPS33A-204ENST00000540669 MOXD1Q6UVY6 613 aa12.07□□□□□ -0.48
VPS33A-204ENST00000540669 RNF207Q6ZRF8 634 aa12.07□□□□□ -0.48
VPS33A-204ENST00000540669 TNS4Q8IZW8 715 aa12.07□□□□□ -0.48
VPS33A-204ENST00000540669 LENG9Q96B70 501 aa12.07□□□□□ -0.48
VPS33A-204ENST00000540669 ERO1AQ96HE7 468 aa12.07□□□□□ -0.48
VPS33A-204ENST00000540669 BRMS1Q9HCU9 246 aa12.07□□□□□ -0.48
VPS33A-204ENST00000540669 HOMER2Q9NSB8 354 aa12.07□□□□□ -0.48
VPS33A-204ENST00000540669 IGLV3-22A0A075B6J6 115 aa12.06□□□□□ -0.48
VPS33A-204ENST00000540669 CYP3A7-CYP3A51PA0A087WV96 503 aa12.06□□□□□ -0.48
VPS33A-204ENST00000540669 SOWAHBA6NEL2 793 aa12.06□□□□□ -0.48
VPS33A-204ENST00000540669 SLC15A5A6NIM6 579 aa12.06□□□□□ -0.48
VPS33A-204ENST00000540669 H3BQV1 296 aa12.06□□□□□ -0.48
VPS33A-204ENST00000540669 STRNO43815 780 aa12.06□□□□□ -0.48
VPS33A-204ENST00000540669 FKTNO75072 461 aa12.06□□□□□ -0.48
VPS33A-204ENST00000540669 CYP3A7P24462 503 aa12.06□□□□□ -0.48
VPS33A-204ENST00000540669 HOXA13P31271 388 aaPredicted RBP12.06□□□□□ -0.48
VPS33A-204ENST00000540669 LACTBP83111 547 aaPredicted RBP12.06□□□□□ -0.48
VPS33A-204ENST00000540669 BAATQ14032 418 aaPredicted RBP12.06□□□□□ -0.48
VPS33A-204ENST00000540669 SAFBQ15424 915 aaKnown RBP eCLIP12.06□□□□□ -0.48
VPS33A-204ENST00000540669 IFFO2Q5TF58 517 aa12.06□□□□□ -0.48
VPS33A-204ENST00000540669 ZNF467Q7Z7K2 595 aaPredicted RBP12.06□□□□□ -0.48
VPS33A-204ENST00000540669 FERMT3Q86UX7 667 aa12.06□□□□□ -0.48
VPS33A-204ENST00000540669 DNERQ8NFT8 737 aa12.06□□□□□ -0.48
VPS33A-204ENST00000540669 IL31RAQ8NI17 732 aa12.06□□□□□ -0.48
VPS33A-204ENST00000540669 GJD2Q9UKL4 321 aa12.06□□□□□ -0.48
VPS33A-204ENST00000540669 DIS3Q9Y2L1 958 aaKnown RBP12.06□□□□□ -0.48
VPS33A-204ENST00000540669 TBC1D8O95759 1140 aa12.05□□□□□ -0.48
VPS33A-204ENST00000540669 CFBP00751 764 aa12.05□□□□□ -0.48
VPS33A-204ENST00000540669 NASPP49321 788 aaPredicted RBP12.05□□□□□ -0.48
VPS33A-204ENST00000540669 ARHGAP4P98171 946 aa12.05□□□□□ -0.48
VPS33A-204ENST00000540669 IRF5Q13568 498 aa12.05□□□□□ -0.48
VPS33A-204ENST00000540669 PLS1Q14651 629 aa12.05□□□□□ -0.48
VPS33A-204ENST00000540669 NONOQ15233 471 aaKnown RBP eCLIP12.05□□□□□ -0.48
VPS33A-204ENST00000540669 RILPL1Q5EBL4 403 aa12.05□□□□□ -0.48
VPS33A-204ENST00000540669 MAMDC4Q6UXC1 1216 aa12.05□□□□□ -0.48
VPS33A-204ENST00000540669 PLEKHH3Q7Z736 793 aa12.05□□□□□ -0.48
VPS33A-204ENST00000540669 NCAPG2Q86XI2 1143 aa12.05□□□□□ -0.48
VPS33A-204ENST00000540669 TRIM47Q96LD4 638 aa12.05□□□□□ -0.48
VPS33A-204ENST00000540669 PDCD2LQ9BRP1 358 aa12.05□□□□□ -0.48
VPS33A-204ENST00000540669 KATNBL1Q9H079 304 aa12.05□□□□□ -0.48
VPS33A-204ENST00000540669 PXMP2Q9NR77 195 aa12.05□□□□□ -0.48
VPS33A-204ENST00000540669 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.05□□□□□ -0.48
VPS33A-204ENST00000540669 BIN2Q9UBW5 565 aaPredicted RBP12.05□□□□□ -0.48
VPS33A-204ENST00000540669 CTDP1Q9Y5B0 961 aaPredicted RBP12.05□□□□□ -0.48
VPS33A-204ENST00000540669 FRMPD3Q5JV73 1810 aa12.04□□□□□ -0.48
VPS33A-204ENST00000540669 WDR81Q562E7 1941 aa12.04□□□□□ -0.48
VPS33A-204ENST00000540669 GPR25O00155 361 aa12.04□□□□□ -0.48
VPS33A-204ENST00000540669 COBLO75128 1261 aa12.04□□□□□ -0.48
VPS33A-204ENST00000540669 FCER1AP12319 257 aa12.04□□□□□ -0.48
VPS33A-204ENST00000540669 ADORA2AP29274 412 aa12.04□□□□□ -0.48
VPS33A-204ENST00000540669 ALDH5A1P51649 535 aaPredicted RBP12.04□□□□□ -0.48
VPS33A-204ENST00000540669 USP11P51784 963 aa12.04□□□□□ -0.48
VPS33A-204ENST00000540669 MRPS9P82933 396 aaKnown RBP12.04□□□□□ -0.48
VPS33A-204ENST00000540669 CNTN2Q02246 1040 aa12.04□□□□□ -0.48
VPS33A-204ENST00000540669 PTPAQ15257 358 aa12.04□□□□□ -0.48
VPS33A-204ENST00000540669 PKN2Q16513 984 aaKnown RBP12.04□□□□□ -0.48
VPS33A-204ENST00000540669 JAKMIP3Q5VZ66 844 aa12.04□□□□□ -0.48
VPS33A-204ENST00000540669 PCNX4Q63HM2 1172 aa12.04□□□□□ -0.48
VPS33A-204ENST00000540669 ATL3Q6DD88 541 aa12.04□□□□□ -0.48
VPS33A-204ENST00000540669 PPP4R3AQ6IN85 833 aa12.04□□□□□ -0.48
VPS33A-204ENST00000540669 XRRA1Q6P2D8 792 aa12.04□□□□□ -0.48
VPS33A-204ENST00000540669 FAM173BQ6P4H8 233 aa12.04□□□□□ -0.48
VPS33A-204ENST00000540669 NSMFQ6X4W1 530 aa12.04□□□□□ -0.48
VPS33A-204ENST00000540669 PIK3AP1Q6ZUJ8 805 aa12.04□□□□□ -0.48
VPS33A-204ENST00000540669 NEK8Q86SG6 692 aa12.04□□□□□ -0.48
VPS33A-204ENST00000540669 C4orf32Q8N8J7 132 aa12.04□□□□□ -0.48
VPS33A-204ENST00000540669 TBCKQ8TEA7 893 aa12.04□□□□□ -0.48
VPS33A-204ENST00000540669 SOCS4Q8WXH5 440 aa12.04□□□□□ -0.48
VPS33A-204ENST00000540669 PGBD1Q96JS3 809 aa12.04□□□□□ -0.48
VPS33A-204ENST00000540669 INPP4AQ96PE3 977 aaPredicted RBP12.04□□□□□ -0.48
VPS33A-204ENST00000540669 PURBQ96QR8 312 aaKnown RBP12.04□□□□□ -0.48
VPS33A-204ENST00000540669 TAAR1Q96RJ0 339 aa12.04□□□□□ -0.48
VPS33A-204ENST00000540669 MMP19Q99542 508 aa12.04□□□□□ -0.48
VPS33A-204ENST00000540669 POLR3EQ9NVU0 708 aa12.04□□□□□ -0.48
VPS33A-204ENST00000540669 DAXXQ9UER7 740 aaPredicted RBP12.04□□□□□ -0.48
VPS33A-204ENST00000540669 CENPFP49454 3210 aa12.04□□□□□ -0.48
VPS33A-204ENST00000540669 CCDC194A0A1B0GVG4 234 aa12.03□□□□□ -0.48
VPS33A-204ENST00000540669 SPDYE3A6NKU9 549 aa12.03□□□□□ -0.48
VPS33A-204ENST00000540669 PITPNM1O00562 1244 aa12.03□□□□□ -0.48
VPS33A-204ENST00000540669 RGS20O76081 388 aa12.03□□□□□ -0.48
VPS33A-204ENST00000540669 GCFC2P16383 781 aaKnown RBP12.03□□□□□ -0.48
VPS33A-204ENST00000540669 SP3Q02447 781 aa12.03□□□□□ -0.48
VPS33A-204ENST00000540669 KCTD2Q14681 263 aa12.03□□□□□ -0.48
VPS33A-204ENST00000540669 PGM5Q15124 567 aa12.03□□□□□ -0.48
VPS33A-204ENST00000540669 INF2Q27J81 1249 aa12.03□□□□□ -0.48
VPS33A-204ENST00000540669 NIPA1Q7RTP0 329 aa12.03□□□□□ -0.48
VPS33A-204ENST00000540669 VSIG10LQ86VR7 867 aa12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms