RNA–Protein interactions for RNA: ENST00000538686.6

USP3-203, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,077 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-203ENST00000538686 GUCY2FP51841 1108 aa13.64□□□□□ -0.23
USP3-203ENST00000538686 SPA17Q15506 151 aa13.64□□□□□ -0.23
USP3-203ENST00000538686 CCDC152Q4G0S7 254 aa13.64□□□□□ -0.23
USP3-203ENST00000538686 VPS37DQ86XT2 251 aa13.64□□□□□ -0.23
USP3-203ENST00000538686 STKLD1Q8NE28 680 aa13.64□□□□□ -0.23
USP3-203ENST00000538686 DSCC1Q9BVC3 393 aa13.64□□□□□ -0.23
USP3-203ENST00000538686 ATP8A2Q9NTI2 1148 aa13.64□□□□□ -0.23
USP3-203ENST00000538686 CABP1Q9NZU7 370 aa13.64□□□□□ -0.23
USP3-203ENST00000538686 MST1RQ04912 1400 aa13.64□□□□□ -0.23
USP3-203ENST00000538686 PFDN1O60925 122 aa13.63□□□□□ -0.23
USP3-203ENST00000538686 GLI1P08151 1106 aa13.63□□□□□ -0.23
USP3-203ENST00000538686 HSD17B3P37058 310 aa13.63□□□□□ -0.23
USP3-203ENST00000538686 CCT6AP40227 531 aaKnown RBP13.63□□□□□ -0.23
USP3-203ENST00000538686 RFC5P40937 340 aa13.63□□□□□ -0.23
USP3-203ENST00000538686 EIF3BP55884 814 aaKnown RBP13.63□□□□□ -0.23
USP3-203ENST00000538686 BNIP1Q12981 228 aa13.63□□□□□ -0.23
USP3-203ENST00000538686 LRRC43Q8N309 656 aa13.63□□□□□ -0.23
USP3-203ENST00000538686 ZBTB8BQ8NAP8 495 aaPredicted RBP13.63□□□□□ -0.23
USP3-203ENST00000538686 RETREG2Q8NC44 543 aa13.63□□□□□ -0.23
USP3-203ENST00000538686 PRCCQ92733 491 aaPredicted RBP13.63□□□□□ -0.23
USP3-203ENST00000538686 AZIN2Q96A70 460 aa13.63□□□□□ -0.23
USP3-203ENST00000538686 GBP5Q96PP8 586 aa13.63□□□□□ -0.23
USP3-203ENST00000538686 GSDMAQ96QA5 445 aa13.63□□□□□ -0.23
USP3-203ENST00000538686 HINFPQ9BQA5 517 aa13.63□□□□□ -0.23
USP3-203ENST00000538686 BOLA2Q9H3K6 86 aa13.63□□□□□ -0.23
USP3-203ENST00000538686 PCDH18Q9HCL0 1135 aa13.63□□□□□ -0.23
USP3-203ENST00000538686 LARSQ9P2J5 1176 aaKnown RBP13.63□□□□□ -0.23
USP3-203ENST00000538686 SERTAD1Q9UHV2 236 aa13.63□□□□□ -0.23
USP3-203ENST00000538686 AGAP1Q9UPQ3 857 aa13.63□□□□□ -0.23
USP3-203ENST00000538686 LRCH1Q9Y2L9 728 aa13.63□□□□□ -0.23
USP3-203ENST00000538686 DAAM1Q9Y4D1 1078 aa13.63□□□□□ -0.23
USP3-203ENST00000538686 COMMD3-BMI1R4GMX3 469 aa13.63□□□□□ -0.23
USP3-203ENST00000538686 BCL9LQ86UU0 1499 aa13.63□□□□□ -0.23
USP3-203ENST00000538686 ARAP3Q8WWN8 1544 aa13.63□□□□□ -0.23
USP3-203ENST00000538686 COL15A1P39059 1388 aa13.63□□□□□ -0.23
USP3-203ENST00000538686 O00370 1275 aa13.63□□□□□ -0.23
USP3-203ENST00000538686 POLR2DO15514 142 aaKnown RBP13.63□□□□□ -0.23
USP3-203ENST00000538686 PDHA1P08559 390 aa13.63□□□□□ -0.23
USP3-203ENST00000538686 KRT16P08779 473 aa13.63□□□□□ -0.23
USP3-203ENST00000538686 GSTT1P30711 240 aa13.63□□□□□ -0.23
USP3-203ENST00000538686 SPDYCQ5MJ68 293 aa13.63□□□□□ -0.23
USP3-203ENST00000538686 RNF220Q5VTB9 566 aa13.63□□□□□ -0.23
USP3-203ENST00000538686 DNAJC9Q8WXX5 260 aa13.63□□□□□ -0.23
USP3-203ENST00000538686 PPP2R3CQ969Q6 453 aa13.63□□□□□ -0.23
USP3-203ENST00000538686 ZNF653Q96CK0 615 aa13.63□□□□□ -0.23
USP3-203ENST00000538686 LACRTQ9GZZ8 138 aa13.63□□□□□ -0.23
USP3-203ENST00000538686 ISCUQ9H1K1 167 aa13.63□□□□□ -0.23
USP3-203ENST00000538686 THAP9Q9H5L6 903 aa13.63□□□□□ -0.23
USP3-203ENST00000538686 RBM12Q9NTZ6 932 aaKnown RBP13.63□□□□□ -0.23
USP3-203ENST00000538686 RPL26L1Q9UNX3 145 aaKnown RBP13.63□□□□□ -0.23
USP3-203ENST00000538686 PIK3C2BO00750 1634 aa13.62□□□□□ -0.23
USP3-203ENST00000538686 TTC26A0AVF1 554 aa13.62□□□□□ -0.23
USP3-203ENST00000538686 MACROD2A1Z1Q3 448 aa13.62□□□□□ -0.23
USP3-203ENST00000538686 UBOX5O94941 541 aa13.62□□□□□ -0.23
USP3-203ENST00000538686 LMNAP02545 664 aaKnown RBP13.62□□□□□ -0.23
USP3-203ENST00000538686 PPARAQ07869 468 aa13.62□□□□□ -0.23
USP3-203ENST00000538686 USH1GQ495M9 461 aa13.62□□□□□ -0.23
USP3-203ENST00000538686 BEND3Q5T5X7 828 aa13.62□□□□□ -0.23
USP3-203ENST00000538686 ASRGL1Q7L266 308 aa13.62□□□□□ -0.23
USP3-203ENST00000538686 ENDOVQ8N8Q3 282 aaKnown RBP13.62□□□□□ -0.23
USP3-203ENST00000538686 LINS1Q8NG48 757 aa13.62□□□□□ -0.23
USP3-203ENST00000538686 KLHDC4Q8TBB5 520 aa13.62□□□□□ -0.23
USP3-203ENST00000538686 STK32AQ8WU08 396 aa13.62□□□□□ -0.23
USP3-203ENST00000538686 PBKQ96KB5 322 aa13.62□□□□□ -0.23
USP3-203ENST00000538686 ARHGEF10LQ9HCE6 1279 aa13.62□□□□□ -0.23
USP3-203ENST00000538686 LUC7LQ9NQ29 371 aaKnown RBP13.62□□□□□ -0.23
USP3-203ENST00000538686 CNOT8Q9UFF9 292 aaKnown RBP13.62□□□□□ -0.23
USP3-203ENST00000538686 NOVA2Q9UNW9 492 aaKnown RBP13.62□□□□□ -0.23
USP3-203ENST00000538686 MLH3Q9UHC1 1453 aa13.62□□□□□ -0.23
USP3-203ENST00000538686 MYH7P12883 1935 aa13.62□□□□□ -0.23
USP3-203ENST00000538686 NUTM2BA6NNL0 878 aaPredicted RBP13.62□□□□□ -0.23
USP3-203ENST00000538686 NUTM2EB1AL46 878 aaPredicted RBP13.62□□□□□ -0.23
USP3-203ENST00000538686 RNF225M0QZC1 329 aaPredicted RBP13.62□□□□□ -0.23
USP3-203ENST00000538686 MAP3K13O43283 966 aa13.62□□□□□ -0.23
USP3-203ENST00000538686 ACTN4O43707 911 aaKnown RBP13.62□□□□□ -0.23
USP3-203ENST00000538686 MBD4O95243 580 aa13.62□□□□□ -0.23
USP3-203ENST00000538686 FBLN1P23142 703 aa13.62□□□□□ -0.23
USP3-203ENST00000538686 RXRBP28702 533 aa13.62□□□□□ -0.23
USP3-203ENST00000538686 MAGOHP61326 146 aaKnown RBP13.62□□□□□ -0.23
USP3-203ENST00000538686 TNNC1P63316 161 aa13.62□□□□□ -0.23
USP3-203ENST00000538686 PHEXP78562 749 aa13.62□□□□□ -0.23
USP3-203ENST00000538686 UBXN1Q04323 297 aa13.62□□□□□ -0.23
USP3-203ENST00000538686 PARP6Q2NL67 630 aa13.62□□□□□ -0.23
USP3-203ENST00000538686 TCP11X2Q5H9J9 407 aa13.62□□□□□ -0.23
USP3-203ENST00000538686 KLHL10Q6JEL2 608 aa13.62□□□□□ -0.23
USP3-203ENST00000538686 BICDL1Q6ZP65 573 aa13.62□□□□□ -0.23
USP3-203ENST00000538686 HOOK3Q86VS8 718 aa13.62□□□□□ -0.23
USP3-203ENST00000538686 RAB11FIP4Q86YS3 637 aa13.62□□□□□ -0.23
USP3-203ENST00000538686 RBBP8NLQ8NC74 664 aaPredicted RBP13.62□□□□□ -0.23
USP3-203ENST00000538686 PROCA1Q8NCQ7 364 aaPredicted RBP13.62□□□□□ -0.23
USP3-203ENST00000538686 CASKIN2Q8WXE0 1202 aa13.62□□□□□ -0.23
USP3-203ENST00000538686 SLC35B4Q969S0 331 aa13.62□□□□□ -0.23
USP3-203ENST00000538686 MAGOHBQ96A72 148 aaKnown RBP13.62□□□□□ -0.23
USP3-203ENST00000538686 FAM136AQ96C01 138 aa13.62□□□□□ -0.23
USP3-203ENST00000538686 COG3Q96JB2 828 aa13.62□□□□□ -0.23
USP3-203ENST00000538686 SH2D4AQ9H788 454 aa13.62□□□□□ -0.23
USP3-203ENST00000538686 BIN2Q9UBW5 565 aaPredicted RBP13.62□□□□□ -0.23
USP3-203ENST00000538686 RWDD2AQ9UIY3 292 aa13.62□□□□□ -0.23
USP3-203ENST00000538686 LRRC37A3O60309 1634 aa13.61□□□□□ -0.23
USP3-203ENST00000538686 MAGEA13PA6NCF6 341 aa13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms