RNA–Protein interactions for RNA: ENST00000538654.5

SNHG1-209, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 2,768 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-209ENST00000538654 GUCY1A3Q02108 690 aa9.98□□□□□ -0.81
SNHG1-209ENST00000538654 IFT88Q13099 833 aa9.98□□□□□ -0.81
SNHG1-209ENST00000538654 EGFL6Q8IUX8 553 aa9.98□□□□□ -0.81
SNHG1-209ENST00000538654 ADSSL1Q8N142 457 aa9.98□□□□□ -0.81
SNHG1-209ENST00000538654 FANCBQ8NB91 859 aa9.98□□□□□ -0.81
SNHG1-209ENST00000538654 PIK3R5Q8WYR1 880 aa9.98□□□□□ -0.81
SNHG1-209ENST00000538654 CCDC43Q96MW1 224 aaKnown RBP9.98□□□□□ -0.81
SNHG1-209ENST00000538654 TTYH3Q9C0H2 523 aa9.98□□□□□ -0.81
SNHG1-209ENST00000538654 BLZF1Q9H2G9 400 aa9.98□□□□□ -0.81
SNHG1-209ENST00000538654 CENPHQ9H3R5 247 aa9.98□□□□□ -0.81
SNHG1-209ENST00000538654 SH2D4AQ9H788 454 aa9.98□□□□□ -0.81
SNHG1-209ENST00000538654 FARP1Q9Y4F1 1045 aaPredicted RBP9.98□□□□□ -0.81
SNHG1-209ENST00000538654 PSMA7O14818 248 aa9.98□□□□□ -0.81
SNHG1-209ENST00000538654 GCP02774 474 aa9.98□□□□□ -0.81
SNHG1-209ENST00000538654 MYL1P05976 194 aa9.98□□□□□ -0.81
SNHG1-209ENST00000538654 DNAJA1P31689 397 aaKnown RBP9.98□□□□□ -0.81
SNHG1-209ENST00000538654 EZH2Q15910 746 aaKnown RBP9.98□□□□□ -0.81
SNHG1-209ENST00000538654 NBPF9Q3BBW0 867 aa9.98□□□□□ -0.81
SNHG1-209ENST00000538654 CFAP221Q4G0U5 840 aa9.98□□□□□ -0.81
SNHG1-209ENST00000538654 KCTD16Q68DU8 428 aa9.98□□□□□ -0.81
SNHG1-209ENST00000538654 IRF2BP1Q8IU81 584 aa9.98□□□□□ -0.81
SNHG1-209ENST00000538654 SH2D3CQ8N5H7 860 aa9.98□□□□□ -0.81
SNHG1-209ENST00000538654 PHF20Q9BVI0 1012 aa9.98□□□□□ -0.81
SNHG1-209ENST00000538654 IFIH1Q9BYX4 1025 aaKnown RBP9.98□□□□□ -0.81
SNHG1-209ENST00000538654 GDF3Q9NR23 364 aa9.98□□□□□ -0.81
SNHG1-209ENST00000538654 TFR2Q9UP52 801 aa9.98□□□□□ -0.81
SNHG1-209ENST00000538654 RTL9Q8NET4 1388 aa9.98□□□□□ -0.81
SNHG1-209ENST00000538654 E7EVH7 732 aa9.97□□□□□ -0.81
SNHG1-209ENST00000538654 KRT14P02533 472 aa9.97□□□□□ -0.81
SNHG1-209ENST00000538654 PHKG2P15735 406 aa9.97□□□□□ -0.81
SNHG1-209ENST00000538654 SLC7A5Q01650 507 aa9.97□□□□□ -0.81
SNHG1-209ENST00000538654 KCNB1Q14721 858 aa9.97□□□□□ -0.81
SNHG1-209ENST00000538654 TTC38Q5R3I4 469 aa9.97□□□□□ -0.81
SNHG1-209ENST00000538654 TTC39BQ5VTQ0 682 aaPredicted RBP9.97□□□□□ -0.81
SNHG1-209ENST00000538654 CYB5D1Q6P9G0 228 aa9.97□□□□□ -0.81
SNHG1-209ENST00000538654 NKX2-3Q8TAU0 364 aa9.97□□□□□ -0.81
SNHG1-209ENST00000538654 STRBPQ96SI9 672 aaKnown RBP9.97□□□□□ -0.81
SNHG1-209ENST00000538654 ATP6V0A4Q9HBG4 840 aa9.97□□□□□ -0.81
SNHG1-209ENST00000538654 PCDH12Q9NPG4 1184 aa9.97□□□□□ -0.81
SNHG1-209ENST00000538654 ZNF233A6NK53 670 aa9.97□□□□□ -0.81
SNHG1-209ENST00000538654 COBLO75128 1261 aa9.97□□□□□ -0.81
SNHG1-209ENST00000538654 MATR3P43243 847 aaKnown RBP eCLIP9.97□□□□□ -0.81
SNHG1-209ENST00000538654 TRAPPC10P48553 1259 aa9.97□□□□□ -0.81
SNHG1-209ENST00000538654 FAM69CQ0P6D2 419 aa9.97□□□□□ -0.81
SNHG1-209ENST00000538654 LONRF1Q17RB8 773 aa9.97□□□□□ -0.81
SNHG1-209ENST00000538654 SYCP2LQ5T4T6 812 aa9.97□□□□□ -0.81
SNHG1-209ENST00000538654 LRIG3Q6UXM1 1119 aa9.97□□□□□ -0.81
SNHG1-209ENST00000538654 IFNL2Q8IZJ0 200 aa9.97□□□□□ -0.81
SNHG1-209ENST00000538654 EIF1ADQ8N9N8 165 aaKnown RBP9.97□□□□□ -0.81
SNHG1-209ENST00000538654 CYFIP2Q96F07 1278 aa9.97□□□□□ -0.81
SNHG1-209ENST00000538654 TRIM47Q96LD4 638 aa9.97□□□□□ -0.81
SNHG1-209ENST00000538654 RBM28Q9NW13 759 aaKnown RBP9.97□□□□□ -0.81
SNHG1-209ENST00000538654 LRWD1Q9UFC0 647 aa9.97□□□□□ -0.81
SNHG1-209ENST00000538654 ZNF532Q9HCE3 1301 aa9.97□□□□□ -0.81
SNHG1-209ENST00000538654 IDH1O75874 414 aaKnown RBP9.97□□□□□ -0.81
SNHG1-209ENST00000538654 S100BP04271 92 aaPredicted RBP9.97□□□□□ -0.81
SNHG1-209ENST00000538654 PDE6AP16499 860 aa9.97□□□□□ -0.81
SNHG1-209ENST00000538654 TATP17735 454 aaPredicted RBP9.97□□□□□ -0.81
SNHG1-209ENST00000538654 HNRNPH3P31942 346 aaKnown RBP9.97□□□□□ -0.81
SNHG1-209ENST00000538654 MCAMP43121 646 aa9.97□□□□□ -0.81
SNHG1-209ENST00000538654 IRX1P78414 480 aaPredicted RBP9.97□□□□□ -0.81
SNHG1-209ENST00000538654 CTDSPL2Q05D32 466 aa9.97□□□□□ -0.81
SNHG1-209ENST00000538654 TBC1D8BQ0IIM8 1120 aa9.97□□□□□ -0.81
SNHG1-209ENST00000538654 ITGB3BPQ13352 177 aaPredicted RBP9.97□□□□□ -0.81
SNHG1-209ENST00000538654 CEP57Q86XR8 500 aa9.97□□□□□ -0.81
SNHG1-209ENST00000538654 IFNL3Q8IZI9 196 aa9.97□□□□□ -0.81
SNHG1-209ENST00000538654 ZNF654Q8IZM8 581 aa9.97□□□□□ -0.81
SNHG1-209ENST00000538654 STAMQ92783 540 aa9.97□□□□□ -0.81
SNHG1-209ENST00000538654 DCAF5Q96JK2 942 aa9.97□□□□□ -0.81
SNHG1-209ENST00000538654 TUBGCP2Q9BSJ2 902 aa9.97□□□□□ -0.81
SNHG1-209ENST00000538654 RNF41Q9H4P4 317 aaPredicted RBP9.97□□□□□ -0.81
SNHG1-209ENST00000538654 AGPAT5Q9NUQ2 364 aa9.97□□□□□ -0.81
SNHG1-209ENST00000538654 PCDHA13Q9Y5I0 950 aa9.97□□□□□ -0.81
SNHG1-209ENST00000538654 DUSP10Q9Y6W6 482 aa9.97□□□□□ -0.81
SNHG1-209ENST00000538654 BICDL2A1A5D9 508 aa9.96□□□□□ -0.81
SNHG1-209ENST00000538654 ANKRD18BA2A2Z9 1011 aa9.96□□□□□ -0.81
SNHG1-209ENST00000538654 GMNCA6NCL1 334 aa9.96□□□□□ -0.81
SNHG1-209ENST00000538654 LCA5LO95447 670 aa9.96□□□□□ -0.81
SNHG1-209ENST00000538654 PPP1R2P41236 205 aa9.96□□□□□ -0.81
SNHG1-209ENST00000538654 SLC8A3P57103 927 aa9.96□□□□□ -0.81
SNHG1-209ENST00000538654 CYP27A1Q02318 531 aa9.96□□□□□ -0.81
SNHG1-209ENST00000538654 PTGDRQ13258 359 aa9.96□□□□□ -0.81
SNHG1-209ENST00000538654 FKBP15Q5T1M5 1219 aa9.96□□□□□ -0.81
SNHG1-209ENST00000538654 EP400NLQ6ZTU2 488 aa9.96□□□□□ -0.81
SNHG1-209ENST00000538654 FUKQ8N0W3 1084 aa9.96□□□□□ -0.81
SNHG1-209ENST00000538654 DHTKD1Q96HY7 919 aaPredicted RBP9.96□□□□□ -0.81
SNHG1-209ENST00000538654 NACAP1Q9BZK3 213 aa9.96□□□□□ -0.81
SNHG1-209ENST00000538654 TRIM6Q9C030 488 aaPredicted RBP9.96□□□□□ -0.81
SNHG1-209ENST00000538654 FER1L4A9Z1Z3 1794 aa9.96□□□□□ -0.82
SNHG1-209ENST00000538654 GRID2IPA4D2P6 1211 aa9.96□□□□□ -0.82
SNHG1-209ENST00000538654 B4DLN1 442 aa9.96□□□□□ -0.82
SNHG1-209ENST00000538654 PRPF3O43395 683 aaKnown RBP9.96□□□□□ -0.82
SNHG1-209ENST00000538654 GNAT2P19087 354 aa9.96□□□□□ -0.82
SNHG1-209ENST00000538654 LONP1P36776 959 aaKnown RBP9.96□□□□□ -0.82
SNHG1-209ENST00000538654 CLNS1AP54105 237 aaKnown RBP9.96□□□□□ -0.82
SNHG1-209ENST00000538654 PPARAQ07869 468 aa9.96□□□□□ -0.82
SNHG1-209ENST00000538654 ZNF174Q15697 407 aa9.96□□□□□ -0.82
SNHG1-209ENST00000538654 LACTB2Q53H82 288 aaPredicted RBP9.96□□□□□ -0.82
SNHG1-209ENST00000538654 ARL6IP4Q66PJ3 421 aaKnown RBP9.96□□□□□ -0.82
SNHG1-209ENST00000538654 PI16Q6UXB8 463 aa9.96□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms