RNA–Protein interactions for RNA: ENST00000537408.1

CLSTN3-207, Transcript of calsyntenin 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLSTN3, Length 4,296 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-207ENST00000537408 TSNAXIP1Q2TAA8 658 aa11.97□□□□□ -0.49
CLSTN3-207ENST00000537408 LONRF3Q496Y0 759 aa11.97□□□□□ -0.49
CLSTN3-207ENST00000537408 EMC10Q5UCC4 262 aa11.97□□□□□ -0.49
CLSTN3-207ENST00000537408 LCA5Q86VQ0 697 aa11.97□□□□□ -0.49
CLSTN3-207ENST00000537408 AATFQ9NY61 560 aaKnown RBP eCLIP11.97□□□□□ -0.49
CLSTN3-207ENST00000537408 BIN2Q9UBW5 565 aaPredicted RBP11.97□□□□□ -0.49
CLSTN3-207ENST00000537408 CCT8L1PA6NM43 557 aa11.97□□□□□ -0.49
CLSTN3-207ENST00000537408 HIP1RO75146 1068 aa11.97□□□□□ -0.49
CLSTN3-207ENST00000537408 NLRP5P59047 1200 aa11.97□□□□□ -0.49
CLSTN3-207ENST00000537408 SH2D4BQ5SQS7 431 aa11.97□□□□□ -0.49
CLSTN3-207ENST00000537408 AGAP11Q8TF27 550 aa11.97□□□□□ -0.49
CLSTN3-207ENST00000537408 MKL1Q969V6 931 aa11.97□□□□□ -0.49
CLSTN3-207ENST00000537408 NAF1Q96HR8 494 aaKnown RBP11.97□□□□□ -0.49
CLSTN3-207ENST00000537408 ABCF2Q9UG63 623 aa11.97□□□□□ -0.49
CLSTN3-207ENST00000537408 KRT14P02533 472 aa11.96□□□□□ -0.49
CLSTN3-207ENST00000537408 PCCAP05165 728 aaPredicted RBP11.96□□□□□ -0.49
CLSTN3-207ENST00000537408 STYK1Q6J9G0 422 aa11.96□□□□□ -0.49
CLSTN3-207ENST00000537408 PPP1R3FQ6ZSY5 799 aaPredicted RBP11.96□□□□□ -0.49
CLSTN3-207ENST00000537408 APBB1IPQ7Z5R6 666 aaPredicted RBP11.96□□□□□ -0.49
CLSTN3-207ENST00000537408 AKT1S1Q96B36 256 aa11.96□□□□□ -0.49
CLSTN3-207ENST00000537408 FAM227BQ96M60 508 aa11.96□□□□□ -0.49
CLSTN3-207ENST00000537408 SAMD15Q9P1V8 674 aa11.96□□□□□ -0.49
CLSTN3-207ENST00000537408 LRP2BPQ9P2M1 347 aa11.96□□□□□ -0.49
CLSTN3-207ENST00000537408 LEMD3Q9Y2U8 911 aa11.96□□□□□ -0.49
CLSTN3-207ENST00000537408 EPN1Q9Y6I3 576 aaPredicted RBP11.96□□□□□ -0.49
CLSTN3-207ENST00000537408 NWD2Q9ULI1 1742 aa11.96□□□□□ -0.49
CLSTN3-207ENST00000537408 DISP2A7MBM2 1401 aa11.96□□□□□ -0.49
CLSTN3-207ENST00000537408 MARCKSP29966 332 aaPredicted RBP11.96□□□□□ -0.49
CLSTN3-207ENST00000537408 TNNI2P48788 182 aa11.96□□□□□ -0.49
CLSTN3-207ENST00000537408 SPTY2D1Q68D10 685 aaPredicted RBP11.96□□□□□ -0.49
CLSTN3-207ENST00000537408 PRR5LQ6MZQ0 368 aa11.96□□□□□ -0.49
CLSTN3-207ENST00000537408 DZIP1Q86YF9 867 aaKnown RBP11.96□□□□□ -0.49
CLSTN3-207ENST00000537408 L3MBTL3Q96JM7 780 aaPredicted RBP11.96□□□□□ -0.49
CLSTN3-207ENST00000537408 FGD4Q96M96 766 aa11.96□□□□□ -0.49
CLSTN3-207ENST00000537408 PCDHA5Q9Y5H7 936 aa11.96□□□□□ -0.49
CLSTN3-207ENST00000537408 ZMYM6O95789 1325 aa11.96□□□□□ -0.5
CLSTN3-207ENST00000537408 PIK3C2AO00443 1686 aa11.96□□□□□ -0.5
CLSTN3-207ENST00000537408 ATP6V1G1O75348 118 aa11.96□□□□□ -0.5
CLSTN3-207ENST00000537408 ZNF18P17022 549 aa11.96□□□□□ -0.5
CLSTN3-207ENST00000537408 PPP1R15BQ5SWA1 713 aa11.96□□□□□ -0.5
CLSTN3-207ENST00000537408 TRMT44Q8IYL2 757 aaKnown RBP11.96□□□□□ -0.5
CLSTN3-207ENST00000537408 C1orf131Q8NDD1 294 aaKnown RBP11.96□□□□□ -0.5
CLSTN3-207ENST00000537408 MAF1Q9H063 256 aa11.96□□□□□ -0.5
CLSTN3-207ENST00000537408 FAM163BP0C2L3 166 aa11.95□□□□□ -0.5
CLSTN3-207ENST00000537408 ZMYM1Q5SVZ6 1142 aa11.95□□□□□ -0.5
CLSTN3-207ENST00000537408 C9orf131Q5VYM1 1079 aa11.95□□□□□ -0.5
CLSTN3-207ENST00000537408 CD302Q8IX05 232 aa11.95□□□□□ -0.5
CLSTN3-207ENST00000537408 TRIML1Q8N9V2 468 aa11.95□□□□□ -0.5
CLSTN3-207ENST00000537408 DCPSQ96C86 337 aaKnown RBP11.95□□□□□ -0.5
CLSTN3-207ENST00000537408 TSPAN18Q96SJ8 248 aa11.95□□□□□ -0.5
CLSTN3-207ENST00000537408 TRIM7Q9C029 511 aa11.95□□□□□ -0.5
CLSTN3-207ENST00000537408 NSRP1Q9H0G5 558 aaKnown RBP11.95□□□□□ -0.5
CLSTN3-207ENST00000537408 CIAPIN1Q6FI81 312 aa11.95□□□□□ -0.5
CLSTN3-207ENST00000537408 ZNF365Q70YC5 407 aa11.95□□□□□ -0.5
CLSTN3-207ENST00000537408 SULF1Q8IWU6 871 aa11.95□□□□□ -0.5
CLSTN3-207ENST00000537408 TSEN2Q8NCE0 465 aaKnown RBP11.95□□□□□ -0.5
CLSTN3-207ENST00000537408 LZTS2Q9BRK4 669 aa11.95□□□□□ -0.5
CLSTN3-207ENST00000537408 ZNHIT6Q9NWK9 470 aaKnown RBP11.95□□□□□ -0.5
CLSTN3-207ENST00000537408 WDR35Q9P2L0 1181 aa11.95□□□□□ -0.5
CLSTN3-207ENST00000537408 ERCC5P28715 1186 aaPredicted RBP11.95□□□□□ -0.5
CLSTN3-207ENST00000537408 CYLC1P35663 651 aaPredicted RBP11.95□□□□□ -0.5
CLSTN3-207ENST00000537408 LZICQ8WZA0 190 aa11.95□□□□□ -0.5
CLSTN3-207ENST00000537408 OPTNQ96CV9 577 aa11.95□□□□□ -0.5
CLSTN3-207ENST00000537408 ZWILCHQ9H900 591 aa11.95□□□□□ -0.5
CLSTN3-207ENST00000537408 COL22A1Q8NFW1 1626 aaPredicted RBP11.95□□□□□ -0.5
CLSTN3-207ENST00000537408 TRAPPC3O43617 180 aa11.94□□□□□ -0.5
CLSTN3-207ENST00000537408 PLCD1P51178 756 aa11.94□□□□□ -0.5
CLSTN3-207ENST00000537408 KIAA0753Q2KHM9 967 aa11.94□□□□□ -0.5
CLSTN3-207ENST00000537408 ANKRD20A2Q5SQ80 823 aa11.94□□□□□ -0.5
CLSTN3-207ENST00000537408 ANKRD20A1Q5TYW2 823 aa11.94□□□□□ -0.5
CLSTN3-207ENST00000537408 ANKRD20A3Q5VUR7 823 aa11.94□□□□□ -0.5
CLSTN3-207ENST00000537408 NUGGCQ68CJ6 796 aa11.94□□□□□ -0.5
CLSTN3-207ENST00000537408 CEP128Q6ZU80 1094 aa11.94□□□□□ -0.5
CLSTN3-207ENST00000537408 NLRP10Q86W26 655 aa11.94□□□□□ -0.5
CLSTN3-207ENST00000537408 TAF1DQ9H5J8 278 aaPredicted RBP11.94□□□□□ -0.5
CLSTN3-207ENST00000537408 POLD4Q9HCU8 107 aa11.94□□□□□ -0.5
CLSTN3-207ENST00000537408 DPPA5A6NC42 116 aa11.94□□□□□ -0.5
CLSTN3-207ENST00000537408 PFDN1O60925 122 aa11.94□□□□□ -0.5
CLSTN3-207ENST00000537408 NDUFA10O95299 355 aa11.94□□□□□ -0.5
CLSTN3-207ENST00000537408 LBRQ14739 615 aaKnown RBP11.94□□□□□ -0.5
CLSTN3-207ENST00000537408 Q4G0T1 1027 aa11.94□□□□□ -0.5
CLSTN3-207ENST00000537408 C17orf50Q8WW18 174 aa11.94□□□□□ -0.5
CLSTN3-207ENST00000537408 HINFPQ9BQA5 517 aa11.94□□□□□ -0.5
CLSTN3-207ENST00000537408 SAMSN1Q9NSI8 373 aaKnown RBP11.94□□□□□ -0.5
CLSTN3-207ENST00000537408 RBM47A0AV96 593 aaKnown RBP11.94□□□□□ -0.5
CLSTN3-207ENST00000537408 RAD21O60216 631 aa11.94□□□□□ -0.5
CLSTN3-207ENST00000537408 TACC1O75410 805 aa11.94□□□□□ -0.5
CLSTN3-207ENST00000537408 TNFRSF8P28908 595 aa11.94□□□□□ -0.5
CLSTN3-207ENST00000537408 GRAPQ13588 217 aa11.94□□□□□ -0.5
CLSTN3-207ENST00000537408 KANK3Q6NY19 840 aa11.94□□□□□ -0.5
CLSTN3-207ENST00000537408 INTS5Q6P9B9 1019 aaKnown RBP11.94□□□□□ -0.5
CLSTN3-207ENST00000537408 GRAPLQ8TC17 118 aaPredicted RBP11.94□□□□□ -0.5
CLSTN3-207ENST00000537408 CCT6BQ92526 530 aa11.94□□□□□ -0.5
CLSTN3-207ENST00000537408 SNRKQ9NRH2 765 aa11.94□□□□□ -0.5
CLSTN3-207ENST00000537408 ABHD10Q9NUJ1 306 aa11.94□□□□□ -0.5
CLSTN3-207ENST00000537408 PRAMEF22A3QJZ6 481 aa11.94□□□□□ -0.5
CLSTN3-207ENST00000537408 CEP104O60308 925 aa11.94□□□□□ -0.5
CLSTN3-207ENST00000537408 SCNN1BP51168 640 aa11.94□□□□□ -0.5
CLSTN3-207ENST00000537408 ITIH3Q06033 890 aa11.94□□□□□ -0.5
CLSTN3-207ENST00000537408 BIRC3Q13489 604 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms