RNA–Protein interactions for RNA: ENST00000533704.1

CAPN1-225, Transcript of calpain 1, humanhuman

TSL 3

Gene CAPN1, Length 643 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN1-225ENST00000533704 TTLL4Q14679 1199 aa12.12□□□□□ -0.47
CAPN1-225ENST00000533704 ARHGEF16Q5VV41 709 aa12.12□□□□□ -0.47
CAPN1-225ENST00000533704 CREB3L3Q68CJ9 461 aa12.12□□□□□ -0.47
CAPN1-225ENST00000533704 RAB11FIP4Q86YS3 637 aa12.12□□□□□ -0.47
CAPN1-225ENST00000533704 ZNF654Q8IZM8 581 aa12.12□□□□□ -0.47
CAPN1-225ENST00000533704 IGDCC4Q8TDY8 1250 aa12.12□□□□□ -0.47
CAPN1-225ENST00000533704 NSUN6Q8TEA1 469 aaKnown RBP12.12□□□□□ -0.47
CAPN1-225ENST00000533704 DOCK5Q9H7D0 1870 aa12.12□□□□□ -0.47
CAPN1-225ENST00000533704 TRIP12Q14669 1992 aaPredicted RBP12.11□□□□□ -0.47
CAPN1-225ENST00000533704 SCN10AQ9Y5Y9 1956 aa12.11□□□□□ -0.47
CAPN1-225ENST00000533704 RBM47A0AV96 593 aaKnown RBP12.11□□□□□ -0.47
CAPN1-225ENST00000533704 CCDC69A6NI79 296 aa12.11□□□□□ -0.47
CAPN1-225ENST00000533704 MYCLP12524 364 aaPredicted RBP12.11□□□□□ -0.47
CAPN1-225ENST00000533704 EDNRBP24530 442 aa12.11□□□□□ -0.47
CAPN1-225ENST00000533704 HOXA13P31271 388 aaPredicted RBP12.11□□□□□ -0.47
CAPN1-225ENST00000533704 CPT1AP50416 773 aa12.11□□□□□ -0.47
CAPN1-225ENST00000533704 EPHB4P54760 987 aa12.11□□□□□ -0.47
CAPN1-225ENST00000533704 NKX3-2P78367 333 aa12.11□□□□□ -0.47
CAPN1-225ENST00000533704 TROAPQ12815 778 aa12.11□□□□□ -0.47
CAPN1-225ENST00000533704 ITGA7Q13683 1181 aa12.11□□□□□ -0.47
CAPN1-225ENST00000533704 SLC35G1Q2M3R5 365 aa12.11□□□□□ -0.47
CAPN1-225ENST00000533704 BRDTQ58F21 947 aaPredicted RBP12.11□□□□□ -0.47
CAPN1-225ENST00000533704 FAM47CQ5HY64 1035 aa12.11□□□□□ -0.47
CAPN1-225ENST00000533704 FAM126BQ8IXS8 530 aa12.11□□□□□ -0.47
CAPN1-225ENST00000533704 DEFB123Q8N688 67 aa12.11□□□□□ -0.47
CAPN1-225ENST00000533704 CTCFLQ8NI51 663 aaPredicted RBP12.11□□□□□ -0.47
CAPN1-225ENST00000533704 PPP1R13LQ8WUF5 828 aa12.11□□□□□ -0.47
CAPN1-225ENST00000533704 MTMR8Q96EF0 704 aa12.11□□□□□ -0.47
CAPN1-225ENST00000533704 LRRC2Q9BYS8 371 aa12.11□□□□□ -0.47
CAPN1-225ENST00000533704 LY9Q9HBG7 655 aa12.11□□□□□ -0.47
CAPN1-225ENST00000533704 POLR3EQ9NVU0 708 aa12.11□□□□□ -0.47
CAPN1-225ENST00000533704 TBX21Q9UL17 535 aa12.11□□□□□ -0.47
CAPN1-225ENST00000533704 SZT2Q5T011 3432 aa12.11□□□□□ -0.47
CAPN1-225ENST00000533704 MYO9BQ13459 2157 aa12.11□□□□□ -0.47
CAPN1-225ENST00000533704 OPLAHO14841 1288 aa12.1□□□□□ -0.47
CAPN1-225ENST00000533704 NKRFO15226 690 aaKnown RBP eCLIP12.1□□□□□ -0.47
CAPN1-225ENST00000533704 CYTH3O43739 400 aa12.1□□□□□ -0.47
CAPN1-225ENST00000533704 CDC45O75419 566 aa12.1□□□□□ -0.47
CAPN1-225ENST00000533704 ARIH2O95376 493 aa12.1□□□□□ -0.47
CAPN1-225ENST00000533704 TIMP1P01033 207 aa12.1□□□□□ -0.47
CAPN1-225ENST00000533704 NEFLP07196 543 aa12.1□□□□□ -0.47
CAPN1-225ENST00000533704 RXRAP19793 462 aa12.1□□□□□ -0.47
CAPN1-225ENST00000533704 KIF5BP33176 963 aa12.1□□□□□ -0.47
CAPN1-225ENST00000533704 COL9A3Q14050 684 aaPredicted RBP12.1□□□□□ -0.47
CAPN1-225ENST00000533704 STXBP2Q15833 593 aa12.1□□□□□ -0.47
CAPN1-225ENST00000533704 RNF20Q5VTR2 975 aa12.1□□□□□ -0.47
CAPN1-225ENST00000533704 FCHSD1Q86WN1 690 aa12.1□□□□□ -0.47
CAPN1-225ENST00000533704 RNPC3Q96LT9 517 aaKnown RBP12.1□□□□□ -0.47
CAPN1-225ENST00000533704 IWS1Q96ST2 819 aa12.1□□□□□ -0.47
CAPN1-225ENST00000533704 TRPV6Q9H1D0 765 aa12.1□□□□□ -0.47
CAPN1-225ENST00000533704 RIOX1Q9H6W3 641 aa12.1□□□□□ -0.47
CAPN1-225ENST00000533704 PXMP2Q9NR77 195 aa12.1□□□□□ -0.47
CAPN1-225ENST00000533704 GRIN2DO15399 1336 aa12.1□□□□□ -0.47
CAPN1-225ENST00000533704 SCN5AQ14524 2016 aa12.1□□□□□ -0.47
CAPN1-225ENST00000533704 PNMA6FA0A0J9YX94 578 aa12.09□□□□□ -0.47
CAPN1-225ENST00000533704 GCOM1H8Y6P7 765 aaPredicted RBP12.09□□□□□ -0.47
CAPN1-225ENST00000533704 SH2B2O14492 632 aaPredicted RBP12.09□□□□□ -0.47
CAPN1-225ENST00000533704 SORBS3O60504 671 aa12.09□□□□□ -0.47
CAPN1-225ENST00000533704 DDAH1O94760 285 aa12.09□□□□□ -0.47
CAPN1-225ENST00000533704 NR3C2P08235 984 aa12.09□□□□□ -0.47
CAPN1-225ENST00000533704 POLR2MP0CAP2 368 aa12.09□□□□□ -0.47
CAPN1-225ENST00000533704 CYP2C18P33260 490 aa12.09□□□□□ -0.47
CAPN1-225ENST00000533704 HSD17B4P51659 736 aa12.09□□□□□ -0.47
CAPN1-225ENST00000533704 PURAQ00577 322 aaKnown RBP12.09□□□□□ -0.47
CAPN1-225ENST00000533704 TRAF1Q13077 416 aa12.09□□□□□ -0.47
CAPN1-225ENST00000533704 NECTIN1Q15223 517 aa12.09□□□□□ -0.47
CAPN1-225ENST00000533704 LY6KQ17RY6 165 aa12.09□□□□□ -0.47
CAPN1-225ENST00000533704 CMTR1Q8N1G2 835 aaKnown RBP12.09□□□□□ -0.47
CAPN1-225ENST00000533704 ZFP91Q96JP5 570 aaPredicted RBP12.09□□□□□ -0.47
CAPN1-225ENST00000533704 TMEM87BQ96K49 555 aa12.09□□□□□ -0.47
CAPN1-225ENST00000533704 FAM161BQ96MY7 647 aa12.09□□□□□ -0.47
CAPN1-225ENST00000533704 MTG1Q9BT17 334 aaPredicted RBP12.09□□□□□ -0.47
CAPN1-225ENST00000533704 MAF1Q9H063 256 aa12.09□□□□□ -0.47
CAPN1-225ENST00000533704 MRVI1Q9Y6F6 885 aa12.09□□□□□ -0.47
CAPN1-225ENST00000533704 GBF1Q92538 1859 aa12.08□□□□□ -0.48
CAPN1-225ENST00000533704 LAMA3Q16787 3333 aa12.08□□□□□ -0.48
CAPN1-225ENST00000533704 B4GALT4O60513 344 aa12.08□□□□□ -0.48
CAPN1-225ENST00000533704 GH1P01241 217 aa12.08□□□□□ -0.48
CAPN1-225ENST00000533704 CD4P01730 458 aa12.08□□□□□ -0.48
CAPN1-225ENST00000533704 ACRP10323 421 aa12.08□□□□□ -0.48
CAPN1-225ENST00000533704 CSF2RAP15509 400 aa12.08□□□□□ -0.48
CAPN1-225ENST00000533704 PPIGQ13427 754 aaKnown RBP eCLIP12.08□□□□□ -0.481e-6■■■■□ 20
CAPN1-225ENST00000533704 MFSD5Q6N075 450 aa12.08□□□□□ -0.48
CAPN1-225ENST00000533704 TMTC2Q8N394 836 aa12.08□□□□□ -0.48
CAPN1-225ENST00000533704 TMEM199Q8N511 208 aa12.08□□□□□ -0.48
CAPN1-225ENST00000533704 SLC43A3Q8NBI5 491 aa12.08□□□□□ -0.48
CAPN1-225ENST00000533704 IL31RAQ8NI17 732 aa12.08□□□□□ -0.48
CAPN1-225ENST00000533704 AFG1LQ8WV93 481 aa12.08□□□□□ -0.48
CAPN1-225ENST00000533704 RRP36Q96EU6 259 aaKnown RBP12.08□□□□□ -0.48
CAPN1-225ENST00000533704 PDCD2LQ9BRP1 358 aa12.08□□□□□ -0.48
CAPN1-225ENST00000533704 HIPK3Q9H422 1215 aa12.08□□□□□ -0.48
CAPN1-225ENST00000533704 SEC63Q9UGP8 760 aaKnown RBP12.08□□□□□ -0.48
CAPN1-225ENST00000533704 SLC12A7Q9Y666 1083 aa12.08□□□□□ -0.48
CAPN1-225ENST00000533704 UMODL1Q5DID0 1318 aa12.08□□□□□ -0.48
CAPN1-225ENST00000533704 A6NJR5 290 aa12.07□□□□□ -0.48
CAPN1-225ENST00000533704 EIF3JO75822 258 aaKnown RBP12.07□□□□□ -0.48
CAPN1-225ENST00000533704 PLEKHA8P1O95397 391 aa12.07□□□□□ -0.48
CAPN1-225ENST00000533704 CCND2P30279 289 aa12.07□□□□□ -0.48
CAPN1-225ENST00000533704 GNAQP50148 359 aa12.07□□□□□ -0.48
CAPN1-225ENST00000533704 CCL23P55773 120 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms