RNA–Protein interactions for RNA: ENST00000533492.1

CPSF1-211, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 510 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-211ENST00000533492 HOMER1Q86YM7 354 aa17.95■□□□□ 0.46
CPSF1-211ENST00000533492 TMEM199Q8N511 208 aa17.95■□□□□ 0.46
CPSF1-211ENST00000533492 IWS1Q96ST2 819 aa17.95■□□□□ 0.46
CPSF1-211ENST00000533492 PCDHA1Q9Y5I3 950 aa17.95■□□□□ 0.46
CPSF1-211ENST00000533492 ZNF697Q5TEC3 545 aa17.94■□□□□ 0.46
CPSF1-211ENST00000533492 CASC1Q6TDU7 716 aa17.94■□□□□ 0.46
CPSF1-211ENST00000533492 SEPT14Q6ZU15 432 aa17.94■□□□□ 0.46
CPSF1-211ENST00000533492 CENPQQ7L2Z9 268 aaPredicted RBP17.94■□□□□ 0.46
CPSF1-211ENST00000533492 MTMR8Q96EF0 704 aa17.94■□□□□ 0.46
CPSF1-211ENST00000533492 MTG1Q9BT17 334 aaPredicted RBP17.94■□□□□ 0.46
CPSF1-211ENST00000533492 SENP2Q9HC62 589 aa17.94■□□□□ 0.46
CPSF1-211ENST00000533492 COL20A1Q9P218 1284 aa17.94■□□□□ 0.46
CPSF1-211ENST00000533492 GRIN2DO15399 1336 aa17.94■□□□□ 0.46
CPSF1-211ENST00000533492 KPNA6O60684 536 aa17.93■□□□□ 0.46
CPSF1-211ENST00000533492 EIF2AK2P19525 551 aaKnown RBP17.93■□□□□ 0.46
CPSF1-211ENST00000533492 CYP2C18P33260 490 aa17.93■□□□□ 0.46
CPSF1-211ENST00000533492 SMAD3P84022 425 aaKnown RBP17.93■□□□□ 0.46
CPSF1-211ENST00000533492 TROAPQ12815 778 aa17.93■□□□□ 0.46
CPSF1-211ENST00000533492 MB21D2Q8IYB1 491 aaPredicted RBP17.93■□□□□ 0.46
CPSF1-211ENST00000533492 IGDCC4Q8TDY8 1250 aa17.93■□□□□ 0.46
CPSF1-211ENST00000533492 COPS5Q92905 334 aa17.93■□□□□ 0.46
CPSF1-211ENST00000533492 FAM161BQ96MY7 647 aa17.93■□□□□ 0.46
CPSF1-211ENST00000533492 PIGSQ96S52 555 aa17.93■□□□□ 0.46
CPSF1-211ENST00000533492 ESYT1Q9BSJ8 1104 aa17.93■□□□□ 0.46
CPSF1-211ENST00000533492 TRPV6Q9H1D0 765 aa17.93■□□□□ 0.46
CPSF1-211ENST00000533492 HIPK3Q9H422 1215 aa17.93■□□□□ 0.46
CPSF1-211ENST00000533492 RIOX1Q9H6W3 641 aa17.93■□□□□ 0.46
CPSF1-211ENST00000533492 MAP3K20Q9NYL2 800 aaKnown RBP17.93■□□□□ 0.46
CPSF1-211ENST00000533492 B4GALT4O60513 344 aa17.92■□□□□ 0.46
CPSF1-211ENST00000533492 CSF2RAP15509 400 aa17.92■□□□□ 0.46
CPSF1-211ENST00000533492 ANTXR2P58335 489 aa17.92■□□□□ 0.46
CPSF1-211ENST00000533492 PURAQ00577 322 aaKnown RBP17.92■□□□□ 0.46
CPSF1-211ENST00000533492 LSG1Q9H089 658 aaKnown RBP17.92■□□□□ 0.46
CPSF1-211ENST00000533492 ANO2Q9NQ90 1003 aa17.92■□□□□ 0.46
CPSF1-211ENST00000533492 STXBP5LQ9Y2K9 1186 aa17.92■□□□□ 0.46
CPSF1-211ENST00000533492 BAZ2BQ9UIF8 2168 aaKnown RBP17.91■□□□□ 0.46
CPSF1-211ENST00000533492 A6NJR5 290 aa17.91■□□□□ 0.46
CPSF1-211ENST00000533492 PPP1R11O60927 126 aaPredicted RBP17.91■□□□□ 0.46
CPSF1-211ENST00000533492 EIF3JO75822 258 aaKnown RBP17.91■□□□□ 0.46
CPSF1-211ENST00000533492 ARIH2O95376 493 aa17.91■□□□□ 0.46
CPSF1-211ENST00000533492 NR3C2P08235 984 aa17.91■□□□□ 0.46
CPSF1-211ENST00000533492 SUPT20HL2P0C7V6 817 aa17.91■□□□□ 0.46
CPSF1-211ENST00000533492 MCM5P33992 734 aa17.91■□□□□ 0.46
CPSF1-211ENST00000533492 HSD17B4P51659 736 aa17.91■□□□□ 0.46
CPSF1-211ENST00000533492 FAM47CQ5HY64 1035 aa17.91■□□□□ 0.46
CPSF1-211ENST00000533492 NFXL1Q6ZNB6 911 aa17.91■□□□□ 0.46
CPSF1-211ENST00000533492 TMTC2Q8N394 836 aa17.91■□□□□ 0.46
CPSF1-211ENST00000533492 SAMD3Q8N6K7 520 aa17.91■□□□□ 0.46
CPSF1-211ENST00000533492 CTCFLQ8NI51 663 aaPredicted RBP17.91■□□□□ 0.46
CPSF1-211ENST00000533492 BUD13Q9BRD0 619 aaKnown RBP eCLIP17.91■□□□□ 0.462e-11■■■■□ 24.8
CPSF1-211ENST00000533492 MTA3Q9BTC8 594 aa17.91■□□□□ 0.46
CPSF1-211ENST00000533492 ALDH8A1Q9H2A2 487 aaPredicted RBP17.91■□□□□ 0.46
CPSF1-211ENST00000533492 PXMP2Q9NR77 195 aa17.91■□□□□ 0.46
CPSF1-211ENST00000533492 PNMA6FA0A0J9YX94 578 aa17.9■□□□□ 0.46
CPSF1-211ENST00000533492 HSFX4A0A1B0GTS1 333 aaPredicted RBP17.9■□□□□ 0.46
CPSF1-211ENST00000533492 HSFX3A0A1B0GWH4 333 aaPredicted RBP17.9■□□□□ 0.46
CPSF1-211ENST00000533492 OPLAHO14841 1288 aa17.9■□□□□ 0.46
CPSF1-211ENST00000533492 SLC27A2O14975 620 aa17.9■□□□□ 0.46
CPSF1-211ENST00000533492 PRC1O43663 620 aa17.9■□□□□ 0.46
CPSF1-211ENST00000533492 GH1P01241 217 aa17.9■□□□□ 0.46
CPSF1-211ENST00000533492 ACRP10323 421 aa17.9■□□□□ 0.46
CPSF1-211ENST00000533492 MYCLP12524 364 aaPredicted RBP17.9■□□□□ 0.46
CPSF1-211ENST00000533492 KIF5BP33176 963 aa17.9■□□□□ 0.46
CPSF1-211ENST00000533492 LY6KQ17RY6 165 aa17.9■□□□□ 0.46
CPSF1-211ENST00000533492 BMP2KLQ5H9B9 411 aa17.9■□□□□ 0.46
CPSF1-211ENST00000533492 CCDC62Q6P9F0 684 aa17.9■□□□□ 0.46
CPSF1-211ENST00000533492 SLC17A8Q8NDX2 589 aa17.9■□□□□ 0.46
CPSF1-211ENST00000533492 PIBF1Q8WXW3 757 aa17.9■□□□□ 0.46
CPSF1-211ENST00000533492 LAMA2P24043 3122 aaKnown RBP17.89■□□□□ 0.46
CPSF1-211ENST00000533492 CCDC69A6NI79 296 aa17.89■□□□□ 0.45
CPSF1-211ENST00000533492 GCOM1H8Y6P7 765 aaPredicted RBP17.89■□□□□ 0.45
CPSF1-211ENST00000533492 CYTH3O43739 400 aa17.89■□□□□ 0.45
CPSF1-211ENST00000533492 POLR2MP0CAP2 368 aa17.89■□□□□ 0.45
CPSF1-211ENST00000533492 HOXA13P31271 388 aaPredicted RBP17.89■□□□□ 0.45
CPSF1-211ENST00000533492 CCL23P55773 120 aa17.89■□□□□ 0.45
CPSF1-211ENST00000533492 CHMP4BP1P59074 171 aa17.89■□□□□ 0.45
CPSF1-211ENST00000533492 GHRHRQ02643 423 aa17.89■□□□□ 0.45
CPSF1-211ENST00000533492 SLC35G1Q2M3R5 365 aa17.89■□□□□ 0.45
CPSF1-211ENST00000533492 NBPF20Q3BBV1 942 aa17.89■□□□□ 0.45
CPSF1-211ENST00000533492 TMEM240Q5SV17 173 aa17.89■□□□□ 0.45
CPSF1-211ENST00000533492 CREB3L3Q68CJ9 461 aa17.89■□□□□ 0.45
CPSF1-211ENST00000533492 PSRC1Q6PGN9 363 aaPredicted RBP17.89■□□□□ 0.45
CPSF1-211ENST00000533492 ZNF365Q70YC5 407 aa17.89■□□□□ 0.45
CPSF1-211ENST00000533492 C16orf59Q7L2K0 433 aa17.89■□□□□ 0.45
CPSF1-211ENST00000533492 ZNF654Q8IZM8 581 aa17.89■□□□□ 0.45
CPSF1-211ENST00000533492 AFG1LQ8WV93 481 aa17.89■□□□□ 0.45
CPSF1-211ENST00000533492 TMEM87BQ96K49 555 aa17.89■□□□□ 0.45
CPSF1-211ENST00000533492 MAP3K14Q99558 947 aa17.89■□□□□ 0.45
CPSF1-211ENST00000533492 NOC4LQ9BVI4 516 aaKnown RBP17.89■□□□□ 0.45
CPSF1-211ENST00000533492 LY9Q9HBG7 655 aa17.89■□□□□ 0.45
CPSF1-211ENST00000533492 IL23AQ9NPF7 189 aa17.89■□□□□ 0.45
CPSF1-211ENST00000533492 MRVI1Q9Y6F6 885 aa17.89■□□□□ 0.45
CPSF1-211ENST00000533492 DDAH1O94760 285 aa17.88■□□□□ 0.45
CPSF1-211ENST00000533492 NECTIN1Q15223 517 aa17.88■□□□□ 0.45
CPSF1-211ENST00000533492 RNF20Q5VTR2 975 aa17.88■□□□□ 0.45
CPSF1-211ENST00000533492 FCHSD1Q86WN1 690 aa17.88■□□□□ 0.45
CPSF1-211ENST00000533492 SKAP1Q86WV1 359 aa17.88■□□□□ 0.45
CPSF1-211ENST00000533492 PDCD2LQ9BRP1 358 aa17.88■□□□□ 0.45
CPSF1-211ENST00000533492 MYL10Q9BUA6 226 aa17.88■□□□□ 0.45
CPSF1-211ENST00000533492 SEMA6BQ9H3T3 888 aa17.88■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms