RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 NIM1KQ8IY84 436 aa4.48□□□□□ -1.69
CD44-229ENST00000528672 OXR1Q8N573 874 aa4.48□□□□□ -1.69
CD44-229ENST00000528672 ANKS4BQ8N8V4 417 aa4.48□□□□□ -1.69
CD44-229ENST00000528672 RCBTB1Q8NDN9 531 aa4.48□□□□□ -1.69
CD44-229ENST00000528672 BHLHE22Q8NFJ8 381 aaPredicted RBP4.48□□□□□ -1.69
CD44-229ENST00000528672 DPF3Q92784 378 aa4.48□□□□□ -1.69
CD44-229ENST00000528672 COPS5Q92905 334 aa4.48□□□□□ -1.69
CD44-229ENST00000528672 NINJ1Q92982 152 aa4.48□□□□□ -1.69
CD44-229ENST00000528672 MFSD3Q96ES6 412 aa4.48□□□□□ -1.69
CD44-229ENST00000528672 HHIPL1Q96JK4 782 aa4.48□□□□□ -1.69
CD44-229ENST00000528672 CEP89Q96ST8 783 aa4.48□□□□□ -1.69
CD44-229ENST00000528672 HOMER2Q9NSB8 354 aa4.48□□□□□ -1.69
CD44-229ENST00000528672 ERVK13-1Q9NX77 482 aa4.48□□□□□ -1.69
CD44-229ENST00000528672 BTG4Q9NY30 223 aa4.48□□□□□ -1.69
CD44-229ENST00000528672 NDOR1Q9UHB4 597 aa4.48□□□□□ -1.69
CD44-229ENST00000528672 PLA2G2DQ9UNK4 145 aa4.48□□□□□ -1.69
CD44-229ENST00000528672 A0A087WZG4 1122 aa4.47□□□□□ -1.69
CD44-229ENST00000528672 NOP56O00567 594 aaKnown RBP4.47□□□□□ -1.69
CD44-229ENST00000528672 KCNK3O14649 394 aa4.47□□□□□ -1.69
CD44-229ENST00000528672 MYCLP1P12525 358 aaPredicted RBP4.47□□□□□ -1.69
CD44-229ENST00000528672 TACR1P25103 407 aa4.47□□□□□ -1.69
CD44-229ENST00000528672 BMP8BP34820 402 aa4.47□□□□□ -1.69
CD44-229ENST00000528672 PCBP3P57721 371 aaKnown RBP4.47□□□□□ -1.69
CD44-229ENST00000528672 EVA1CP58658 441 aa4.47□□□□□ -1.69
CD44-229ENST00000528672 LAPTM5Q13571 262 aa4.47□□□□□ -1.69
CD44-229ENST00000528672 HSP90AA2PQ14568 343 aaPredicted RBP4.47□□□□□ -1.69
CD44-229ENST00000528672 SNX17Q15036 470 aa4.47□□□□□ -1.69
CD44-229ENST00000528672 CT47A1Q5JQC4 288 aaPredicted RBP4.47□□□□□ -1.69
CD44-229ENST00000528672 SPPL2CQ8IUH8 684 aa4.47□□□□□ -1.69
CD44-229ENST00000528672 RBM12BQ8IXT5 1001 aaKnown RBP4.47□□□□□ -1.69
CD44-229ENST00000528672 PRPF38AQ8NAV1 312 aaKnown RBP4.47□□□□□ -1.69
CD44-229ENST00000528672 CHAC2Q8WUX2 184 aa4.47□□□□□ -1.69
CD44-229ENST00000528672 FAM168AQ92567 244 aa4.47□□□□□ -1.69
CD44-229ENST00000528672 SGSM3Q96HU1 749 aa4.47□□□□□ -1.69
CD44-229ENST00000528672 IPO9Q96P70 1041 aaKnown RBP4.47□□□□□ -1.69
CD44-229ENST00000528672 JMJD8Q96S16 334 aa4.47□□□□□ -1.69
CD44-229ENST00000528672 CDC6Q99741 560 aa4.47□□□□□ -1.69
CD44-229ENST00000528672 DHRS4Q9BTZ2 278 aa4.47□□□□□ -1.69
CD44-229ENST00000528672 KRTAP4-5Q9BYR2 181 aa4.47□□□□□ -1.69
CD44-229ENST00000528672 SP110Q9HB58 689 aa4.47□□□□□ -1.69
CD44-229ENST00000528672 GULP1Q9UBP9 304 aa4.47□□□□□ -1.69
CD44-229ENST00000528672 DIS3Q9Y2L1 958 aaKnown RBP4.47□□□□□ -1.69
CD44-229ENST00000528672 PCDHA8Q9Y5H6 950 aa4.47□□□□□ -1.69
CD44-229ENST00000528672 LOC101059915A0A1B0GWI6 518 aaPredicted RBP4.46□□□□□ -1.7
CD44-229ENST00000528672 DBX1A6NMT0 343 aa4.46□□□□□ -1.7
CD44-229ENST00000528672 FGF10O15520 208 aaPredicted RBP4.46□□□□□ -1.7
CD44-229ENST00000528672 RFPL3O75679 317 aa4.46□□□□□ -1.7
CD44-229ENST00000528672 DNAJC8O75937 253 aaPredicted RBP4.46□□□□□ -1.7
CD44-229ENST00000528672 GSNP06396 782 aa4.46□□□□□ -1.7
CD44-229ENST00000528672 GLI1P08151 1106 aa4.46□□□□□ -1.7
CD44-229ENST00000528672 ZGLP1P0C6A0 271 aa4.46□□□□□ -1.7
CD44-229ENST00000528672 NAT2P11245 290 aa4.46□□□□□ -1.7
CD44-229ENST00000528672 FPR2P25090 351 aa4.46□□□□□ -1.7
CD44-229ENST00000528672 KIR2DL1P43626 348 aaPredicted RBP4.46□□□□□ -1.7
CD44-229ENST00000528672 KIR2DL2P43627 348 aaPredicted RBP4.46□□□□□ -1.7
CD44-229ENST00000528672 PABPC4Q13310 644 aaKnown RBP eCLIP4.46□□□□□ -1.7
CD44-229ENST00000528672 KCNMB1Q16558 191 aa4.46□□□□□ -1.7
CD44-229ENST00000528672 TM4SF20Q53R12 229 aa4.46□□□□□ -1.7
CD44-229ENST00000528672 ZNF648Q5T619 568 aaPredicted RBP4.46□□□□□ -1.7
CD44-229ENST00000528672 FYB2Q5VWT5 728 aa4.46□□□□□ -1.7
CD44-229ENST00000528672 SPOCD1Q6ZMY3 1216 aa4.46□□□□□ -1.7
CD44-229ENST00000528672 BRAPQ7Z569 592 aa4.46□□□□□ -1.7
CD44-229ENST00000528672 NLRP10Q86W26 655 aa4.46□□□□□ -1.7
CD44-229ENST00000528672 PPIL6Q8IXY8 311 aa4.46□□□□□ -1.7
CD44-229ENST00000528672 LINC01599Q8WXQ3 324 aa4.46□□□□□ -1.7
CD44-229ENST00000528672 JDP2Q8WYK2 163 aa4.46□□□□□ -1.7
CD44-229ENST00000528672 KIRREL1Q96J84 757 aa4.46□□□□□ -1.7
CD44-229ENST00000528672 BCAS3Q9H6U6 928 aa4.46□□□□□ -1.7
CD44-229ENST00000528672 CAAP1Q9H8G2 361 aa4.46□□□□□ -1.7
CD44-229ENST00000528672 NCOA5Q9HCD5 579 aaKnown RBP4.46□□□□□ -1.7
CD44-229ENST00000528672 TRIM39Q9HCM9 518 aa4.46□□□□□ -1.7
CD44-229ENST00000528672 ATP8A1Q9Y2Q0 1164 aa4.46□□□□□ -1.7
CD44-229ENST00000528672 SIT1Q9Y3P8 196 aa4.46□□□□□ -1.7
CD44-229ENST00000528672 BACE2Q9Y5Z0 518 aa4.46□□□□□ -1.7
CD44-229ENST00000528672 HCFC2Q9Y5Z7 792 aa4.46□□□□□ -1.7
CD44-229ENST00000528672 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP4.46□□□□□ -1.7
CD44-229ENST00000528672 CARMIL2Q6F5E8 1435 aa4.46□□□□□ -1.7
CD44-229ENST00000528672 PSPNO60542 156 aa4.45□□□□□ -1.7
CD44-229ENST00000528672 SRGAP2CP0DJJ0 459 aa4.45□□□□□ -1.7
CD44-229ENST00000528672 FGFR1P11362 822 aa4.45□□□□□ -1.7
CD44-229ENST00000528672 KCNA6P17658 529 aa4.45□□□□□ -1.7
CD44-229ENST00000528672 SOX5P35711 763 aa4.45□□□□□ -1.7
CD44-229ENST00000528672 STAT3P40763 770 aa4.45□□□□□ -1.7
CD44-229ENST00000528672 ZNF143P52747 638 aaPredicted RBP4.45□□□□□ -1.7
CD44-229ENST00000528672 PCBP1Q15365 356 aaKnown RBP eCLIP4.45□□□□□ -1.7
CD44-229ENST00000528672 ODR4Q5SWX8 454 aa4.45□□□□□ -1.7
CD44-229ENST00000528672 LHFPL2Q6ZUX7 228 aa4.45□□□□□ -1.7
CD44-229ENST00000528672 STRA8Q7Z7C7 330 aa4.45□□□□□ -1.7
CD44-229ENST00000528672 THNSL2Q86YJ6 484 aa4.45□□□□□ -1.7
CD44-229ENST00000528672 JAMLQ86YT9 394 aa4.45□□□□□ -1.7
CD44-229ENST00000528672 TEX2Q8IWB9 1127 aa4.45□□□□□ -1.7
CD44-229ENST00000528672 FCRL2Q96LA5 508 aaPredicted RBP4.45□□□□□ -1.7
CD44-229ENST00000528672 PTCHD1Q96NR3 888 aa4.45□□□□□ -1.7
CD44-229ENST00000528672 PHF20Q9BVI0 1012 aa4.45□□□□□ -1.7
CD44-229ENST00000528672 CYP26B1Q9NR63 512 aa4.45□□□□□ -1.7
CD44-229ENST00000528672 FAN1Q9Y2M0 1017 aa4.45□□□□□ -1.7
CD44-229ENST00000528672 SF3B6Q9Y3B4 125 aaKnown RBP4.45□□□□□ -1.7
CD44-229ENST00000528672 RWDD3Q9Y3V2 267 aa4.45□□□□□ -1.7
CD44-229ENST00000528672 C7orf72A4D263 438 aa4.44□□□□□ -1.7
CD44-229ENST00000528672 PLD2O14939 933 aa4.44□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms