RNA–Protein interactions for RNA: ENST00000525854.5

HIF3A-209, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 5

Gene HIF3A, Length 767 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-209ENST00000525854 STXBP2Q15833 593 aa13.51□□□□□ -0.25
HIF3A-209ENST00000525854 ARHGEF16Q5VV41 709 aa13.51□□□□□ -0.25
HIF3A-209ENST00000525854 CASC1Q6TDU7 716 aa13.51□□□□□ -0.25
HIF3A-209ENST00000525854 STOX1Q6ZVD7 989 aa13.51□□□□□ -0.25
HIF3A-209ENST00000525854 CHST3Q7LGC8 479 aa13.51□□□□□ -0.25
HIF3A-209ENST00000525854 MB21D2Q8IYB1 491 aaPredicted RBP13.51□□□□□ -0.25
HIF3A-209ENST00000525854 TBC1D5Q92609 795 aa13.51□□□□□ -0.25
HIF3A-209ENST00000525854 TAAR1Q96RJ0 339 aa13.51□□□□□ -0.25
HIF3A-209ENST00000525854 ESYT1Q9BSJ8 1104 aa13.51□□□□□ -0.25
HIF3A-209ENST00000525854 MTG1Q9BT17 334 aaPredicted RBP13.51□□□□□ -0.25
HIF3A-209ENST00000525854 PCDHA1Q9Y5I3 950 aa13.51□□□□□ -0.25
HIF3A-209ENST00000525854 TAF6LQ9Y6J9 622 aa13.51□□□□□ -0.25
HIF3A-209ENST00000525854 GRIN2DO15399 1336 aa13.5□□□□□ -0.25
HIF3A-209ENST00000525854 EIF3JO75822 258 aaKnown RBP13.5□□□□□ -0.25
HIF3A-209ENST00000525854 MYL3P08590 195 aa13.5□□□□□ -0.25
HIF3A-209ENST00000525854 SUPT20HL2P0C7V6 817 aa13.5□□□□□ -0.25
HIF3A-209ENST00000525854 HSD17B4P51659 736 aa13.5□□□□□ -0.25
HIF3A-209ENST00000525854 PSMC6P62333 389 aa13.5□□□□□ -0.25
HIF3A-209ENST00000525854 PURAQ00577 322 aaKnown RBP13.5□□□□□ -0.25
HIF3A-209ENST00000525854 GHRHRQ02643 423 aa13.5□□□□□ -0.25
HIF3A-209ENST00000525854 BMP2KLQ5H9B9 411 aa13.5□□□□□ -0.25
HIF3A-209ENST00000525854 ZNF697Q5TEC3 545 aa13.5□□□□□ -0.25
HIF3A-209ENST00000525854 HOMER1Q86YM7 354 aa13.5□□□□□ -0.25
HIF3A-209ENST00000525854 TMTC2Q8N394 836 aa13.5□□□□□ -0.25
HIF3A-209ENST00000525854 IGDCC4Q8TDY8 1250 aa13.5□□□□□ -0.25
HIF3A-209ENST00000525854 PPP1R12CQ9BZL4 782 aa13.5□□□□□ -0.25
HIF3A-209ENST00000525854 LSG1Q9H089 658 aaKnown RBP13.5□□□□□ -0.25
HIF3A-209ENST00000525854 HIPK3Q9H422 1215 aa13.5□□□□□ -0.25
HIF3A-209ENST00000525854 RIOX1Q9H6W3 641 aa13.5□□□□□ -0.25
HIF3A-209ENST00000525854 COL20A1Q9P218 1284 aa13.5□□□□□ -0.25
HIF3A-209ENST00000525854 STXBP5LQ9Y2K9 1186 aa13.5□□□□□ -0.25
HIF3A-209ENST00000525854 PNMA6FA0A0J9YX94 578 aa13.49□□□□□ -0.25
HIF3A-209ENST00000525854 PPP1R11O60927 126 aaPredicted RBP13.49□□□□□ -0.25
HIF3A-209ENST00000525854 DDAH1O94760 285 aa13.49□□□□□ -0.25
HIF3A-209ENST00000525854 NR3C2P08235 984 aa13.49□□□□□ -0.25
HIF3A-209ENST00000525854 EIF2AK2P19525 551 aaKnown RBP13.49□□□□□ -0.25
HIF3A-209ENST00000525854 KIF5BP33176 963 aa13.49□□□□□ -0.25
HIF3A-209ENST00000525854 MCM5P33992 734 aa13.49□□□□□ -0.25
HIF3A-209ENST00000525854 ANTXR2P58335 489 aa13.49□□□□□ -0.25
HIF3A-209ENST00000525854 CCDC62Q6P9F0 684 aa13.49□□□□□ -0.25
HIF3A-209ENST00000525854 PSRC1Q6PGN9 363 aaPredicted RBP13.49□□□□□ -0.25
HIF3A-209ENST00000525854 SEPT14Q6ZU15 432 aa13.49□□□□□ -0.25
HIF3A-209ENST00000525854 CTCFLQ8NI51 663 aaPredicted RBP13.49□□□□□ -0.25
HIF3A-209ENST00000525854 PIGSQ96S52 555 aa13.49□□□□□ -0.25
HIF3A-209ENST00000525854 MAP3K14Q99558 947 aa13.49□□□□□ -0.25
HIF3A-209ENST00000525854 TRPV6Q9H1D0 765 aa13.49□□□□□ -0.25
HIF3A-209ENST00000525854 ALDH8A1Q9H2A2 487 aaPredicted RBP13.49□□□□□ -0.25
HIF3A-209ENST00000525854 SENP2Q9HC62 589 aa13.49□□□□□ -0.25
HIF3A-209ENST00000525854 ANO2Q9NQ90 1003 aa13.49□□□□□ -0.25
HIF3A-209ENST00000525854 PXMP2Q9NR77 195 aa13.49□□□□□ -0.25
HIF3A-209ENST00000525854 HSFX4A0A1B0GTS1 333 aaPredicted RBP13.48□□□□□ -0.25
HIF3A-209ENST00000525854 HSFX3A0A1B0GWH4 333 aaPredicted RBP13.48□□□□□ -0.25
HIF3A-209ENST00000525854 GCOM1H8Y6P7 765 aaPredicted RBP13.48□□□□□ -0.25
HIF3A-209ENST00000525854 OPLAHO14841 1288 aa13.48□□□□□ -0.25
HIF3A-209ENST00000525854 PRC1O43663 620 aa13.48□□□□□ -0.25
HIF3A-209ENST00000525854 B4GALT4O60513 344 aa13.48□□□□□ -0.25
HIF3A-209ENST00000525854 GH1P01241 217 aa13.48□□□□□ -0.25
HIF3A-209ENST00000525854 POLR2MP0CAP2 368 aa13.48□□□□□ -0.25
HIF3A-209ENST00000525854 CSF2RAP15509 400 aa13.48□□□□□ -0.25
HIF3A-209ENST00000525854 CYP2C18P33260 490 aa13.48□□□□□ -0.25
HIF3A-209ENST00000525854 RNF20Q5VTR2 975 aa13.48□□□□□ -0.25
HIF3A-209ENST00000525854 NFRKBQ6P4R8 1299 aa13.48□□□□□ -0.25
HIF3A-209ENST00000525854 COPS5Q92905 334 aa13.48□□□□□ -0.25
HIF3A-209ENST00000525854 TMEM87BQ96K49 555 aa13.48□□□□□ -0.25
HIF3A-209ENST00000525854 LZTS2Q9BRK4 669 aa13.48□□□□□ -0.25
HIF3A-209ENST00000525854 LY9Q9HBG7 655 aa13.48□□□□□ -0.25
HIF3A-209ENST00000525854 TMEM265A0A087WTH1 108 aa13.47□□□□□ -0.25
HIF3A-209ENST00000525854 SLC27A2O14975 620 aa13.47□□□□□ -0.25
HIF3A-209ENST00000525854 CYTH3O43739 400 aa13.47□□□□□ -0.25
HIF3A-209ENST00000525854 ARIH2O95376 493 aa13.47□□□□□ -0.25
HIF3A-209ENST00000525854 SMARCA1P28370 1054 aa13.47□□□□□ -0.25
HIF3A-209ENST00000525854 GNAQP50148 359 aa13.47□□□□□ -0.25
HIF3A-209ENST00000525854 PTPN11Q06124 597 aaPredicted RBP13.47□□□□□ -0.25
HIF3A-209ENST00000525854 SLC35G1Q2M3R5 365 aa13.47□□□□□ -0.25
HIF3A-209ENST00000525854 NBPF20Q3BBV1 942 aa13.47□□□□□ -0.25
HIF3A-209ENST00000525854 FAM47CQ5HY64 1035 aa13.47□□□□□ -0.25
HIF3A-209ENST00000525854 TMEM240Q5SV17 173 aa13.47□□□□□ -0.25
HIF3A-209ENST00000525854 CREB3L3Q68CJ9 461 aa13.47□□□□□ -0.25
HIF3A-209ENST00000525854 KCNV1Q6PIU1 500 aa13.47□□□□□ -0.25
HIF3A-209ENST00000525854 NFXL1Q6ZNB6 911 aa13.47□□□□□ -0.25
HIF3A-209ENST00000525854 ZNF654Q8IZM8 581 aa13.47□□□□□ -0.25
HIF3A-209ENST00000525854 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.47□□□□□ -0.25
HIF3A-209ENST00000525854 PDCD2LQ9BRP1 358 aa13.47□□□□□ -0.25
HIF3A-209ENST00000525854 NOC4LQ9BVI4 516 aaKnown RBP13.47□□□□□ -0.25
HIF3A-209ENST00000525854 MTIF3Q9H2K0 278 aaKnown RBP13.47□□□□□ -0.25
HIF3A-209ENST00000525854 IL23AQ9NPF7 189 aa13.47□□□□□ -0.25
HIF3A-209ENST00000525854 MRVI1Q9Y6F6 885 aa13.47□□□□□ -0.25
HIF3A-209ENST00000525854 CCDC69A6NI79 296 aa13.46□□□□□ -0.25
HIF3A-209ENST00000525854 CALM1P0DP23 149 aa13.46□□□□□ -0.25
HIF3A-209ENST00000525854 CALM2P0DP24 149 aa13.46□□□□□ -0.25
HIF3A-209ENST00000525854 CALM3P0DP25 149 aa13.46□□□□□ -0.25
HIF3A-209ENST00000525854 CASTP20810 708 aaKnown RBP13.46□□□□□ -0.25
HIF3A-209ENST00000525854 HOXA13P31271 388 aaPredicted RBP13.46□□□□□ -0.25
HIF3A-209ENST00000525854 LIFRP42702 1097 aa13.46□□□□□ -0.25
HIF3A-209ENST00000525854 ARHGAP1Q07960 439 aa13.46□□□□□ -0.25
HIF3A-209ENST00000525854 NECTIN1Q15223 517 aa13.46□□□□□ -0.25
HIF3A-209ENST00000525854 LY6KQ17RY6 165 aa13.46□□□□□ -0.25
HIF3A-209ENST00000525854 C16orf59Q7L2K0 433 aa13.46□□□□□ -0.25
HIF3A-209ENST00000525854 RPUSD2Q8IZ73 545 aaKnown RBP13.46□□□□□ -0.25
HIF3A-209ENST00000525854 AFG1LQ8WV93 481 aa13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms