RNA–Protein interactions for RNA: ENST00000517862.1

CPNE3-204, Transcript of copine 3, humanhuman

TSL 3

Gene CPNE3, Length 654 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-204ENST00000517862 IGHA2P01877 340 aa4.5□□□□□ -1.69
CPNE3-204ENST00000517862 ITGB5P18084 799 aa4.5□□□□□ -1.69
CPNE3-204ENST00000517862 GTF2A2P52657 109 aa4.5□□□□□ -1.69
CPNE3-204ENST00000517862 CENPCQ03188 943 aa4.5□□□□□ -1.69
CPNE3-204ENST00000517862 FPGSQ05932 587 aa4.5□□□□□ -1.69
CPNE3-204ENST00000517862 DSC3Q14574 896 aa4.5□□□□□ -1.69
CPNE3-204ENST00000517862 RRS1Q15050 365 aaKnown RBP4.5□□□□□ -1.69
CPNE3-204ENST00000517862 KRTAP21-3Q3LHN1 58 aa4.5□□□□□ -1.69
CPNE3-204ENST00000517862 PDZD3Q86UT5 571 aa4.5□□□□□ -1.69
CPNE3-204ENST00000517862 ZDHHC13Q8IUH4 622 aa4.5□□□□□ -1.69
CPNE3-204ENST00000517862 KSR1Q8IVT5 923 aa4.5□□□□□ -1.69
CPNE3-204ENST00000517862 ADHFE1Q8IWW8 467 aa4.5□□□□□ -1.69
CPNE3-204ENST00000517862 DNAJC10Q8IXB1 793 aa4.5□□□□□ -1.69
CPNE3-204ENST00000517862 RUBCNQ92622 972 aa4.5□□□□□ -1.69
CPNE3-204ENST00000517862 OPTNQ96CV9 577 aa4.5□□□□□ -1.69
CPNE3-204ENST00000517862 ZSCAN10Q96SZ4 725 aaPredicted RBP4.5□□□□□ -1.69
CPNE3-204ENST00000517862 ESYT1Q9BSJ8 1104 aa4.5□□□□□ -1.69
CPNE3-204ENST00000517862 C2orf49Q9BVC5 232 aaPredicted RBP4.5□□□□□ -1.69
CPNE3-204ENST00000517862 NIF3L1Q9GZT8 377 aa4.5□□□□□ -1.69
CPNE3-204ENST00000517862 BCL11AQ9H165 835 aa4.5□□□□□ -1.69
CPNE3-204ENST00000517862 STIM2Q9P246 746 aa4.5□□□□□ -1.69
CPNE3-204ENST00000517862 KCNH4Q9UQ05 1017 aa4.5□□□□□ -1.69
CPNE3-204ENST00000517862 ZBTB1Q9Y2K1 713 aa4.5□□□□□ -1.69
CPNE3-204ENST00000517862 DMXL2Q8TDJ6 3036 aa4.5□□□□□ -1.69
CPNE3-204ENST00000517862 SPG11Q96JI7 2443 aa4.5□□□□□ -1.69
CPNE3-204ENST00000517862 COL12A1Q99715 3063 aa4.49□□□□□ -1.69
CPNE3-204ENST00000517862 PCNX1Q96RV3 2341 aa4.49□□□□□ -1.69
CPNE3-204ENST00000517862 ABCA2Q9BZC7 2435 aa4.49□□□□□ -1.69
CPNE3-204ENST00000517862 A0A087WZG4 1122 aa4.49□□□□□ -1.69
CPNE3-204ENST00000517862 PNMA6FA0A0J9YX94 578 aa4.49□□□□□ -1.69
CPNE3-204ENST00000517862 TRIM43BA6NCK2 446 aa4.49□□□□□ -1.69
CPNE3-204ENST00000517862 A6NJY4 79 aa4.49□□□□□ -1.69
CPNE3-204ENST00000517862 PRPF40AO75400 957 aaKnown RBP4.49□□□□□ -1.69
CPNE3-204ENST00000517862 IL2RAP01589 272 aa4.49□□□□□ -1.69
CPNE3-204ENST00000517862 HSP90B1P14625 803 aaKnown RBP4.49□□□□□ -1.69
CPNE3-204ENST00000517862 CANXP27824 592 aaKnown RBP4.49□□□□□ -1.69
CPNE3-204ENST00000517862 PMLP29590 882 aa4.49□□□□□ -1.69
CPNE3-204ENST00000517862 AMPHP49418 695 aa4.49□□□□□ -1.69
CPNE3-204ENST00000517862 PLCB3Q01970 1234 aa4.49□□□□□ -1.69
CPNE3-204ENST00000517862 DNM1Q05193 864 aaKnown RBP4.49□□□□□ -1.69
CPNE3-204ENST00000517862 TNP2Q05952 138 aa4.49□□□□□ -1.69
CPNE3-204ENST00000517862 TLR1Q15399 786 aa4.49□□□□□ -1.69
CPNE3-204ENST00000517862 SYT9Q86SS6 491 aa4.49□□□□□ -1.69
CPNE3-204ENST00000517862 ZNF605Q86T29 641 aa4.49□□□□□ -1.69
CPNE3-204ENST00000517862 NLRP8Q86W28 1048 aa4.49□□□□□ -1.69
CPNE3-204ENST00000517862 METTL16Q86W50 562 aaKnown RBP4.49□□□□□ -1.69
CPNE3-204ENST00000517862 NT5DC4Q86YG4 428 aa4.49□□□□□ -1.69
CPNE3-204ENST00000517862 SUGP2Q8IX01 1082 aaKnown RBP eCLIP4.49□□□□□ -1.69
CPNE3-204ENST00000517862 ZGPATQ8N5A5 531 aaKnown RBP4.49□□□□□ -1.69
CPNE3-204ENST00000517862 CYP2W1Q8TAV3 490 aa4.49□□□□□ -1.69
CPNE3-204ENST00000517862 TRIM43Q96BQ3 446 aaPredicted RBP4.49□□□□□ -1.69
CPNE3-204ENST00000517862 PUS7Q96PZ0 661 aaKnown RBP4.49□□□□□ -1.69
CPNE3-204ENST00000517862 FAM129BQ96TA1 746 aa4.49□□□□□ -1.69
CPNE3-204ENST00000517862 MDFIQ99750 246 aa4.49□□□□□ -1.69
CPNE3-204ENST00000517862 SEMA4AQ9H3S1 761 aa4.49□□□□□ -1.69
CPNE3-204ENST00000517862 CLMPQ9H6B4 373 aa4.49□□□□□ -1.69
CPNE3-204ENST00000517862 PDLIM7Q9NR12 457 aa4.49□□□□□ -1.69
CPNE3-204ENST00000517862 SCHIP1Q9P0W5 487 aaPredicted RBP4.49□□□□□ -1.69
CPNE3-204ENST00000517862 POLIQ9UNA4 740 aa4.49□□□□□ -1.69
CPNE3-204ENST00000517862 YBX2Q9Y2T7 364 aaKnown RBP4.49□□□□□ -1.69
CPNE3-204ENST00000517862 STARD13Q9Y3M8 1113 aa4.49□□□□□ -1.69
CPNE3-204ENST00000517862 NCAPD2Q15021 1401 aa4.48□□□□□ -1.69
CPNE3-204ENST00000517862 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP4.48□□□□□ -1.69
CPNE3-204ENST00000517862 PRR5-ARHGAP8B1AHC4 643 aa4.48□□□□□ -1.69
CPNE3-204ENST00000517862 ERVV-2B6SEH9 535 aa4.48□□□□□ -1.69
CPNE3-204ENST00000517862 J3QKU1 62 aa4.48□□□□□ -1.69
CPNE3-204ENST00000517862 HMGCRP04035 888 aa4.48□□□□□ -1.69
CPNE3-204ENST00000517862 CYP19A1P11511 503 aaPredicted RBP4.48□□□□□ -1.69
CPNE3-204ENST00000517862 HOXC9P31274 260 aa4.48□□□□□ -1.69
CPNE3-204ENST00000517862 TNNI2P48788 182 aa4.48□□□□□ -1.69
CPNE3-204ENST00000517862 SMTNP53814 917 aa4.48□□□□□ -1.69
CPNE3-204ENST00000517862 ZNF280AP59817 542 aaPredicted RBP4.48□□□□□ -1.69
CPNE3-204ENST00000517862 ARHGAP8P85298 464 aa4.48□□□□□ -1.69
CPNE3-204ENST00000517862 ZXDAP98168 799 aa4.48□□□□□ -1.69
CPNE3-204ENST00000517862 PSMD2Q13200 908 aa4.48□□□□□ -1.69
CPNE3-204ENST00000517862 SF3A1Q15459 793 aaKnown RBP4.48□□□□□ -1.69
CPNE3-204ENST00000517862 DPP8Q6V1X1 898 aaPredicted RBP4.48□□□□□ -1.69
CPNE3-204ENST00000517862 ETFBKMTQ8IXQ9 262 aa4.48□□□□□ -1.69
CPNE3-204ENST00000517862 IFNL2Q8IZJ0 200 aa4.48□□□□□ -1.69
CPNE3-204ENST00000517862 FMR1NBQ8N0W7 255 aaPredicted RBP4.48□□□□□ -1.69
CPNE3-204ENST00000517862 UBXN4Q92575 508 aa4.48□□□□□ -1.69
CPNE3-204ENST00000517862 EDEM1Q92611 657 aa4.48□□□□□ -1.69
CPNE3-204ENST00000517862 RPGRQ92834 1020 aaKnown RBP4.48□□□□□ -1.69
CPNE3-204ENST00000517862 DMRTB1Q96MA1 342 aa4.48□□□□□ -1.69
CPNE3-204ENST00000517862 DNAJC2Q99543 621 aaKnown RBP4.48□□□□□ -1.69
CPNE3-204ENST00000517862 HAUS7Q99871 368 aa4.48□□□□□ -1.69
CPNE3-204ENST00000517862 BUD13Q9BRD0 619 aaKnown RBP eCLIP4.48□□□□□ -1.69
CPNE3-204ENST00000517862 RTFDC1Q9BY42 306 aaPredicted RBP4.48□□□□□ -1.69
CPNE3-204ENST00000517862 ELP3Q9H9T3 547 aa4.48□□□□□ -1.69
CPNE3-204ENST00000517862 ZCCHC17Q9NP64 241 aaKnown RBP4.48□□□□□ -1.69
CPNE3-204ENST00000517862 MYOZ2Q9NPC6 264 aa4.48□□□□□ -1.69
CPNE3-204ENST00000517862 KLK14Q9P0G3 267 aa4.48□□□□□ -1.69
CPNE3-204ENST00000517862 FAM50BQ9Y247 325 aa4.48□□□□□ -1.69
CPNE3-204ENST00000517862 LRRC37AA6NMS7 1700 aa4.47□□□□□ -1.69
CPNE3-204ENST00000517862 AK9Q5TCS8 1911 aa4.47□□□□□ -1.69
CPNE3-204ENST00000517862 TMEM8BA6NDV4 472 aa4.47□□□□□ -1.69
CPNE3-204ENST00000517862 A6NHS1 94 aa4.47□□□□□ -1.69
CPNE3-204ENST00000517862 BTBD19C9JJ37 291 aa4.47□□□□□ -1.69
CPNE3-204ENST00000517862 TNPO2O14787 897 aaKnown RBP4.47□□□□□ -1.69
CPNE3-204ENST00000517862 SORBS3O60504 671 aa4.47□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms