RNA–Protein interactions for RNA: ENST00000516665.1

RNU6-539P-201, Transcript of RNA, U6 small nuclear 539, pseudogene, humanhuman

BASIC

Gene RNU6-539P, Length 103 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-539P-201ENST00000516665 KRTAP4-1Q9BYQ7 146 aa0.86□□□□□ -2.27
RNU6-539P-201ENST00000516665 EHD4Q9H223 541 aa0.86□□□□□ -2.27
RNU6-539P-201ENST00000516665 KDM4CQ9H3R0 1056 aa0.86□□□□□ -2.27
RNU6-539P-201ENST00000516665 CAPNS1P04632 268 aa0.85□□□□□ -2.27
RNU6-539P-201ENST00000516665 NME2P22392 152 aa0.85□□□□□ -2.27
RNU6-539P-201ENST00000516665 GRK4P32298 578 aa0.85□□□□□ -2.27
RNU6-539P-201ENST00000516665 NMIQ13287 307 aaPredicted RBP0.85□□□□□ -2.27
RNU6-539P-201ENST00000516665 SF3B4Q15427 424 aaKnown RBP eCLIP0.85□□□□□ -2.27
RNU6-539P-201ENST00000516665 KIAA0319Q5VV43 1072 aa0.85□□□□□ -2.27
RNU6-539P-201ENST00000516665 HIST2H2BCQ6DN03 193 aa0.85□□□□□ -2.27
RNU6-539P-201ENST00000516665 KIAA1161Q6NSJ0 714 aa0.85□□□□□ -2.27
RNU6-539P-201ENST00000516665 SAMD14Q8IZD0 417 aaPredicted RBP0.85□□□□□ -2.27
RNU6-539P-201ENST00000516665 RNF141Q8WVD5 230 aa0.85□□□□□ -2.27
RNU6-539P-201ENST00000516665 ZCCHC14Q8WYQ9 949 aaKnown RBP0.85□□□□□ -2.27
RNU6-539P-201ENST00000516665 NEIL1Q96FI4 390 aaPredicted RBP0.85□□□□□ -2.27
RNU6-539P-201ENST00000516665 ZSWIM3Q96MP5 696 aa0.85□□□□□ -2.27
RNU6-539P-201ENST00000516665 OR14A2Q96R54 314 aa0.85□□□□□ -2.27
RNU6-539P-201ENST00000516665 GOPCQ9HD26 462 aa0.85□□□□□ -2.27
RNU6-539P-201ENST00000516665 TJP2Q9UDY2 1190 aa0.85□□□□□ -2.27
RNU6-539P-201ENST00000516665 INSL6Q9Y581 213 aa0.85□□□□□ -2.27
RNU6-539P-201ENST00000516665 CORINQ9Y5Q5 1042 aa0.85□□□□□ -2.27
RNU6-539P-201ENST00000516665 SLC4A7Q9Y6M7 1214 aa0.85□□□□□ -2.27
RNU6-539P-201ENST00000516665 IGKV2D-30A0A075B6S6 120 aa0.84□□□□□ -2.27
RNU6-539P-201ENST00000516665 TRIM37O94972 964 aa0.84□□□□□ -2.27
RNU6-539P-201ENST00000516665 KRT2P35908 639 aa0.84□□□□□ -2.27
RNU6-539P-201ENST00000516665 CCT4P50991 539 aaKnown RBP0.84□□□□□ -2.27
RNU6-539P-201ENST00000516665 SRSF4Q08170 494 aaKnown RBP0.84□□□□□ -2.27
RNU6-539P-201ENST00000516665 TROAPQ12815 778 aa0.84□□□□□ -2.27
RNU6-539P-201ENST00000516665 ADAM9Q13443 819 aa0.84□□□□□ -2.27
RNU6-539P-201ENST00000516665 MEPCEQ7L2J0 689 aaKnown RBP0.84□□□□□ -2.27
RNU6-539P-201ENST00000516665 RALYLQ86SE5 291 aaKnown RBP0.84□□□□□ -2.27
RNU6-539P-201ENST00000516665 HAS1Q92839 578 aa0.84□□□□□ -2.27
RNU6-539P-201ENST00000516665 BARX1Q9HBU1 254 aaPredicted RBP0.84□□□□□ -2.27
RNU6-539P-201ENST00000516665 SLC24A3Q9HC58 644 aa0.84□□□□□ -2.27
RNU6-539P-201ENST00000516665 PDLIM7Q9NR12 457 aa0.84□□□□□ -2.27
RNU6-539P-201ENST00000516665 PROCRQ9UNN8 238 aa0.84□□□□□ -2.27
RNU6-539P-201ENST00000516665 TP53BP1Q12888 1972 aaPredicted RBP0.84□□□□□ -2.28
RNU6-539P-201ENST00000516665 TMEM238LA0A1B0GVL6 79 aa0.83□□□□□ -2.28
RNU6-539P-201ENST00000516665 USP17L15C9J2P7 530 aa0.83□□□□□ -2.28
RNU6-539P-201ENST00000516665 USP17L10C9JJH3 530 aa0.83□□□□□ -2.28
RNU6-539P-201ENST00000516665 USP17L13C9JLJ4 530 aa0.83□□□□□ -2.28
RNU6-539P-201ENST00000516665 USP17L12C9JPN9 530 aa0.83□□□□□ -2.28
RNU6-539P-201ENST00000516665 USP17L11C9JVI0 530 aa0.83□□□□□ -2.28
RNU6-539P-201ENST00000516665 USP17L21D6R901 530 aa0.83□□□□□ -2.28
RNU6-539P-201ENST00000516665 USP17L18D6R9N7 530 aa0.83□□□□□ -2.28
RNU6-539P-201ENST00000516665 USP17L22D6RA61 530 aa0.83□□□□□ -2.28
RNU6-539P-201ENST00000516665 USP17L17D6RBQ6 530 aa0.83□□□□□ -2.28
RNU6-539P-201ENST00000516665 USP17L19D6RCP7 530 aa0.83□□□□□ -2.28
RNU6-539P-201ENST00000516665 USP17L20D6RJB6 530 aa0.83□□□□□ -2.28
RNU6-539P-201ENST00000516665 TP73O15350 636 aa0.83□□□□□ -2.28
RNU6-539P-201ENST00000516665 GLI4P10075 376 aa0.83□□□□□ -2.28
RNU6-539P-201ENST00000516665 PTGS2P35354 604 aa0.83□□□□□ -2.28
RNU6-539P-201ENST00000516665 CDK8P49336 464 aa0.83□□□□□ -2.28
RNU6-539P-201ENST00000516665 USP17L24Q0WX57 530 aa0.83□□□□□ -2.28
RNU6-539P-201ENST00000516665 SH2D3CQ8N5H7 860 aa0.83□□□□□ -2.28
RNU6-539P-201ENST00000516665 ZNF513Q8N8E2 541 aaPredicted RBP0.83□□□□□ -2.28
RNU6-539P-201ENST00000516665 DAGLBQ8NCG7 672 aa0.83□□□□□ -2.28
RNU6-539P-201ENST00000516665 CDADC1Q9BWV3 514 aa0.83□□□□□ -2.28
RNU6-539P-201ENST00000516665 EMILIN2Q9BXX0 1053 aa0.83□□□□□ -2.28
RNU6-539P-201ENST00000516665 ANTXR1Q9H6X2 564 aa0.83□□□□□ -2.28
RNU6-539P-201ENST00000516665 COL4A3Q01955 1670 aa0.83□□□□□ -2.28
RNU6-539P-201ENST00000516665 KRTAP23-1A1A580 65 aa0.82□□□□□ -2.28
RNU6-539P-201ENST00000516665 ERI2A8K979 691 aaKnown RBP0.82□□□□□ -2.28
RNU6-539P-201ENST00000516665 SPRY2O43597 315 aa0.82□□□□□ -2.28
RNU6-539P-201ENST00000516665 MATN4O95460 622 aa0.82□□□□□ -2.28
RNU6-539P-201ENST00000516665 TYRP1P17643 537 aa0.82□□□□□ -2.28
RNU6-539P-201ENST00000516665 MZF1P28698 734 aaPredicted RBP0.82□□□□□ -2.28
RNU6-539P-201ENST00000516665 ELLP55199 621 aaPredicted RBP0.82□□□□□ -2.28
RNU6-539P-201ENST00000516665 FOXL1Q12952 345 aa0.82□□□□□ -2.28
RNU6-539P-201ENST00000516665 RRP1BQ14684 758 aaKnown RBP0.82□□□□□ -2.28
RNU6-539P-201ENST00000516665 NBPF6Q5VWK0 638 aa0.82□□□□□ -2.28
RNU6-539P-201ENST00000516665 CD300LDQ6UXZ3 194 aa0.82□□□□□ -2.28
RNU6-539P-201ENST00000516665 RHOUQ7L0Q8 258 aa0.82□□□□□ -2.28
RNU6-539P-201ENST00000516665 GPR155Q7Z3F1 870 aa0.82□□□□□ -2.28
RNU6-539P-201ENST00000516665 MRPL41Q8IXM3 137 aaKnown RBP0.82□□□□□ -2.28
RNU6-539P-201ENST00000516665 ENOX1Q8TC92 643 aaKnown RBP0.82□□□□□ -2.28
RNU6-539P-201ENST00000516665 NBPF4Q96M43 638 aa0.82□□□□□ -2.28
RNU6-539P-201ENST00000516665 PCDH18Q9HCL0 1135 aa0.82□□□□□ -2.28
RNU6-539P-201ENST00000516665 ARHGAP20Q9P2F6 1191 aa0.82□□□□□ -2.28
RNU6-539P-201ENST00000516665 FTSJ1Q9UET6 329 aa0.82□□□□□ -2.28
RNU6-539P-201ENST00000516665 POLIQ9UNA4 740 aa0.82□□□□□ -2.28
RNU6-539P-201ENST00000516665 GIT1Q9Y2X7 761 aa0.82□□□□□ -2.28
RNU6-539P-201ENST00000516665 INSIG1O15503 277 aa0.81□□□□□ -2.28
RNU6-539P-201ENST00000516665 B3GALT2O43825 422 aa0.81□□□□□ -2.28
RNU6-539P-201ENST00000516665 PRMT3O60678 531 aa0.81□□□□□ -2.28
RNU6-539P-201ENST00000516665 SNHG28P0DPA3 235 aa0.81□□□□□ -2.28
RNU6-539P-201ENST00000516665 PTPN11Q06124 597 aaPredicted RBP0.81□□□□□ -2.28
RNU6-539P-201ENST00000516665 DUSP8Q13202 625 aa0.81□□□□□ -2.28
RNU6-539P-201ENST00000516665 RASIP1Q5U651 963 aa0.81□□□□□ -2.28
RNU6-539P-201ENST00000516665 PRPF40BQ6NWY9 871 aaKnown RBP0.81□□□□□ -2.28
RNU6-539P-201ENST00000516665 PDZRN4Q6ZMN7 1036 aaPredicted RBP0.81□□□□□ -2.28
RNU6-539P-201ENST00000516665 TMC3Q7Z5M5 1100 aa0.81□□□□□ -2.28
RNU6-539P-201ENST00000516665 ZDHHC17Q8IUH5 632 aa0.81□□□□□ -2.28
RNU6-539P-201ENST00000516665 ZNF655Q8N720 491 aaPredicted RBP0.81□□□□□ -2.28
RNU6-539P-201ENST00000516665 PROKR1Q8TCW9 393 aa0.81□□□□□ -2.28
RNU6-539P-201ENST00000516665 TMEM87BQ96K49 555 aa0.81□□□□□ -2.28
RNU6-539P-201ENST00000516665 DPYSL5Q9BPU6 564 aa0.81□□□□□ -2.28
RNU6-539P-201ENST00000516665 MINPP1Q9UNW1 487 aa0.81□□□□□ -2.28
RNU6-539P-201ENST00000516665 MMP24Q9Y5R2 645 aa0.81□□□□□ -2.28
RNU6-539P-201ENST00000516665 TBC1D4O60343 1298 aa0.8□□□□□ -2.28
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms