RNA–Protein interactions for RNA: ENST00000515516.1

TCOF1-215, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 661 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-215ENST00000515516 SUPT20HL2P0C7V6 817 aa15.86■□□□□ 0.13
TCOF1-215ENST00000515516 EIF2AK2P19525 551 aaKnown RBP15.86■□□□□ 0.13
TCOF1-215ENST00000515516 EPHB4P54760 987 aa15.86■□□□□ 0.13
TCOF1-215ENST00000515516 NFXL1Q6ZNB6 911 aa15.86■□□□□ 0.13
TCOF1-215ENST00000515516 SAMD3Q8N6K7 520 aa15.86■□□□□ 0.13
TCOF1-215ENST00000515516 MTMR8Q96EF0 704 aa15.86■□□□□ 0.13
TCOF1-215ENST00000515516 ESYT1Q9BSJ8 1104 aa15.86■□□□□ 0.13
TCOF1-215ENST00000515516 HIPK3Q9H422 1215 aa15.86■□□□□ 0.13
TCOF1-215ENST00000515516 ANO2Q9NQ90 1003 aa15.86■□□□□ 0.13
TCOF1-215ENST00000515516 STXBP5LQ9Y2K9 1186 aa15.86■□□□□ 0.13
TCOF1-215ENST00000515516 LAMA4Q16363 1823 aa15.86■□□□□ 0.13
TCOF1-215ENST00000515516 EIF3JO75822 258 aaKnown RBP15.85■□□□□ 0.13
TCOF1-215ENST00000515516 GH1P01241 217 aa15.85■□□□□ 0.13
TCOF1-215ENST00000515516 CSF2RAP15509 400 aa15.85■□□□□ 0.13
TCOF1-215ENST00000515516 KIF5BP33176 963 aa15.85■□□□□ 0.13
TCOF1-215ENST00000515516 CYP2C18P33260 490 aa15.85■□□□□ 0.13
TCOF1-215ENST00000515516 MCM5P33992 734 aa15.85■□□□□ 0.13
TCOF1-215ENST00000515516 PURAQ00577 322 aaKnown RBP15.85■□□□□ 0.13
TCOF1-215ENST00000515516 FAM47CQ5HY64 1035 aa15.85■□□□□ 0.13
TCOF1-215ENST00000515516 PSRC1Q6PGN9 363 aaPredicted RBP15.85■□□□□ 0.13
TCOF1-215ENST00000515516 STOX1Q6ZVD7 989 aa15.85■□□□□ 0.13
TCOF1-215ENST00000515516 TMTC2Q8N394 836 aa15.85■□□□□ 0.13
TCOF1-215ENST00000515516 CTCFLQ8NI51 663 aaPredicted RBP15.85■□□□□ 0.13
TCOF1-215ENST00000515516 COPS5Q92905 334 aa15.85■□□□□ 0.13
TCOF1-215ENST00000515516 FAM161BQ96MY7 647 aa15.85■□□□□ 0.13
TCOF1-215ENST00000515516 PIGSQ96S52 555 aa15.85■□□□□ 0.13
TCOF1-215ENST00000515516 TRPV6Q9H1D0 765 aa15.85■□□□□ 0.13
TCOF1-215ENST00000515516 RIOX1Q9H6W3 641 aa15.85■□□□□ 0.13
TCOF1-215ENST00000515516 PXMP2Q9NR77 195 aa15.85■□□□□ 0.13
TCOF1-215ENST00000515516 COL20A1Q9P218 1284 aa15.85■□□□□ 0.13
TCOF1-215ENST00000515516 TAF6LQ9Y6J9 622 aa15.85■□□□□ 0.13
TCOF1-215ENST00000515516 GRIN2DO15399 1336 aa15.85■□□□□ 0.13
TCOF1-215ENST00000515516 PNMA6FA0A0J9YX94 578 aa15.84■□□□□ 0.13
TCOF1-215ENST00000515516 HSFX4A0A1B0GTS1 333 aaPredicted RBP15.84■□□□□ 0.13
TCOF1-215ENST00000515516 HSFX3A0A1B0GWH4 333 aaPredicted RBP15.84■□□□□ 0.13
TCOF1-215ENST00000515516 CCDC69A6NI79 296 aa15.84■□□□□ 0.13
TCOF1-215ENST00000515516 A6NJR5 290 aa15.84■□□□□ 0.13
TCOF1-215ENST00000515516 GCOM1H8Y6P7 765 aaPredicted RBP15.84■□□□□ 0.13
TCOF1-215ENST00000515516 PRC1O43663 620 aa15.84■□□□□ 0.13
TCOF1-215ENST00000515516 B4GALT4O60513 344 aa15.84■□□□□ 0.13
TCOF1-215ENST00000515516 NR3C2P08235 984 aa15.84■□□□□ 0.13
TCOF1-215ENST00000515516 POLR2MP0CAP2 368 aa15.84■□□□□ 0.13
TCOF1-215ENST00000515516 HSD17B4P51659 736 aa15.84■□□□□ 0.13
TCOF1-215ENST00000515516 TROAPQ12815 778 aa15.84■□□□□ 0.13
TCOF1-215ENST00000515516 MB21D2Q8IYB1 491 aaPredicted RBP15.84■□□□□ 0.13
TCOF1-215ENST00000515516 SLC17A8Q8NDX2 589 aa15.84■□□□□ 0.13
TCOF1-215ENST00000515516 IGDCC4Q8TDY8 1250 aa15.84■□□□□ 0.13
TCOF1-215ENST00000515516 MTA3Q9BTC8 594 aa15.84■□□□□ 0.13
TCOF1-215ENST00000515516 LSG1Q9H089 658 aaKnown RBP15.84■□□□□ 0.13
TCOF1-215ENST00000515516 ALDH8A1Q9H2A2 487 aaPredicted RBP15.84■□□□□ 0.13
TCOF1-215ENST00000515516 MTIF3Q9H2K0 278 aaKnown RBP15.84■□□□□ 0.13
TCOF1-215ENST00000515516 SENP2Q9HC62 589 aa15.84■□□□□ 0.13
TCOF1-215ENST00000515516 PPP1R11O60927 126 aaPredicted RBP15.83■□□□□ 0.12
TCOF1-215ENST00000515516 DDAH1O94760 285 aa15.83■□□□□ 0.12
TCOF1-215ENST00000515516 MYCLP12524 364 aaPredicted RBP15.83■□□□□ 0.12
TCOF1-215ENST00000515516 GNAQP50148 359 aa15.83■□□□□ 0.12
TCOF1-215ENST00000515516 ANTXR2P58335 489 aa15.83■□□□□ 0.12
TCOF1-215ENST00000515516 CHMP4BP1P59074 171 aa15.83■□□□□ 0.12
TCOF1-215ENST00000515516 LY6KQ17RY6 165 aa15.83■□□□□ 0.12
TCOF1-215ENST00000515516 BMP2KLQ5H9B9 411 aa15.83■□□□□ 0.12
TCOF1-215ENST00000515516 RNF20Q5VTR2 975 aa15.83■□□□□ 0.12
TCOF1-215ENST00000515516 PIBF1Q8WXW3 757 aa15.83■□□□□ 0.12
TCOF1-215ENST00000515516 TMEM87BQ96K49 555 aa15.83■□□□□ 0.12
TCOF1-215ENST00000515516 MAP3K14Q99558 947 aa15.83■□□□□ 0.12
TCOF1-215ENST00000515516 BUD13Q9BRD0 619 aaKnown RBP eCLIP15.83■□□□□ 0.127e-7■□□□□ 9.5
TCOF1-215ENST00000515516 LZTS2Q9BRK4 669 aa15.83■□□□□ 0.12
TCOF1-215ENST00000515516 IL23AQ9NPF7 189 aa15.83■□□□□ 0.12
TCOF1-215ENST00000515516 MRVI1Q9Y6F6 885 aa15.83■□□□□ 0.12
TCOF1-215ENST00000515516 SZT2Q5T011 3432 aa15.82■□□□□ 0.12
TCOF1-215ENST00000515516 SLC27A2O14975 620 aa15.82■□□□□ 0.12
TCOF1-215ENST00000515516 ARIH2O95376 493 aa15.82■□□□□ 0.12
TCOF1-215ENST00000515516 ACRP10323 421 aa15.82■□□□□ 0.12
TCOF1-215ENST00000515516 CASTP20810 708 aaKnown RBP15.82■□□□□ 0.12
TCOF1-215ENST00000515516 HOXA13P31271 388 aaPredicted RBP15.82■□□□□ 0.12
TCOF1-215ENST00000515516 CCL23P55773 120 aa15.82■□□□□ 0.12
TCOF1-215ENST00000515516 NBPF20Q3BBV1 942 aa15.82■□□□□ 0.12
TCOF1-215ENST00000515516 TMEM240Q5SV17 173 aa15.82■□□□□ 0.12
TCOF1-215ENST00000515516 CREB3L3Q68CJ9 461 aa15.82■□□□□ 0.12
TCOF1-215ENST00000515516 NFRKBQ6P4R8 1299 aa15.82■□□□□ 0.12
TCOF1-215ENST00000515516 CCDC62Q6P9F0 684 aa15.82■□□□□ 0.12
TCOF1-215ENST00000515516 KCNV1Q6PIU1 500 aa15.82■□□□□ 0.12
TCOF1-215ENST00000515516 ZNF365Q70YC5 407 aa15.82■□□□□ 0.12
TCOF1-215ENST00000515516 RPUSD2Q8IZ73 545 aaKnown RBP15.82■□□□□ 0.12
TCOF1-215ENST00000515516 ZNF654Q8IZM8 581 aa15.82■□□□□ 0.12
TCOF1-215ENST00000515516 AFG1LQ8WV93 481 aa15.82■□□□□ 0.12
TCOF1-215ENST00000515516 RRP36Q96EU6 259 aaKnown RBP15.82■□□□□ 0.12
TCOF1-215ENST00000515516 NOC4LQ9BVI4 516 aaKnown RBP15.82■□□□□ 0.12
TCOF1-215ENST00000515516 SEMA6BQ9H3T3 888 aa15.82■□□□□ 0.12
TCOF1-215ENST00000515516 LY9Q9HBG7 655 aa15.82■□□□□ 0.12
TCOF1-215ENST00000515516 SEC63Q9UGP8 760 aaKnown RBP15.82■□□□□ 0.12
TCOF1-215ENST00000515516 NOD1Q9Y239 953 aa15.82■□□□□ 0.12
TCOF1-215ENST00000515516 DNAH12Q6ZR08 3092 aa15.82■□□□□ 0.12
TCOF1-215ENST00000515516 LTBP2Q14767 1821 aa15.82■□□□□ 0.12
TCOF1-215ENST00000515516 MCM3APO60318 1980 aa15.82■□□□□ 0.12
TCOF1-215ENST00000515516 OPLAHO14841 1288 aa15.81■□□□□ 0.12
TCOF1-215ENST00000515516 CYTH3O43739 400 aa15.81■□□□□ 0.12
TCOF1-215ENST00000515516 FGBP02675 491 aa15.81■□□□□ 0.12
TCOF1-215ENST00000515516 CALM1P0DP23 149 aa15.81■□□□□ 0.12
TCOF1-215ENST00000515516 CALM2P0DP24 149 aa15.81■□□□□ 0.12
TCOF1-215ENST00000515516 CALM3P0DP25 149 aa15.81■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms