RNA–Protein interactions for RNA: ENST00000514402.1

MATR3-223, Transcript of matrin 3, human

TSL 2

Gene MATR3, Length 556 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MATR3-223	ENST00000514402	TBX1	O43435	398 aa		6.62	□□□□□ -1.35
MATR3-223	ENST00000514402	ATP2B1	P20020	1258 aa		6.62	□□□□□ -1.35
MATR3-223	ENST00000514402	MAP4K2	Q12851	820 aa		6.62	□□□□□ -1.35
MATR3-223	ENST00000514402	IGDCC3	Q8IVU1	814 aa		6.62	□□□□□ -1.35
MATR3-223	ENST00000514402		Q8N1Y9	231 aa		6.62	□□□□□ -1.35
MATR3-223	ENST00000514402	USP33	Q8TEY7	942 aa		6.62	□□□□□ -1.35
MATR3-223	ENST00000514402	DIO2	Q92813	273 aa		6.62	□□□□□ -1.35
MATR3-223	ENST00000514402	TANGO6	Q9C0B7	1094 aa		6.62	□□□□□ -1.35
MATR3-223	ENST00000514402	U2SURP	O15042	1029 aa	Known RBP	6.61	□□□□□ -1.35
MATR3-223	ENST00000514402	MYO1B	O43795	1136 aa		6.61	□□□□□ -1.35
MATR3-223	ENST00000514402	PPP1R11	O60927	126 aa	Predicted RBP	6.61	□□□□□ -1.35
MATR3-223	ENST00000514402	FBLN1	P23142	703 aa		6.61	□□□□□ -1.35
MATR3-223	ENST00000514402	IGFBP6	P24592	240 aa	Predicted RBP	6.61	□□□□□ -1.35
MATR3-223	ENST00000514402	RPL11	P62913	178 aa	Known RBP	6.61	□□□□□ -1.35
MATR3-223	ENST00000514402	PPP2R2A	P63151	447 aa		6.61	□□□□□ -1.35
MATR3-223	ENST00000514402	ZNF200	P98182	395 aa	Predicted RBP	6.61	□□□□□ -1.35
MATR3-223	ENST00000514402	FBLN7	Q53RD9	439 aa		6.61	□□□□□ -1.35
MATR3-223	ENST00000514402	TCERG1L	Q5VWI1	586 aa		6.61	□□□□□ -1.35
MATR3-223	ENST00000514402	DCP2	Q8IU60	420 aa	Known RBP	6.61	□□□□□ -1.35
MATR3-223	ENST00000514402	RIOX2	Q8IUF8	465 aa		6.61	□□□□□ -1.35
MATR3-223	ENST00000514402	NLGN1	Q8N2Q7	840 aa		6.61	□□□□□ -1.35
MATR3-223	ENST00000514402	KREMEN2	Q8NCW0	462 aa		6.61	□□□□□ -1.35
MATR3-223	ENST00000514402	PLEKHO2	Q8TD55	490 aa		6.61	□□□□□ -1.35
MATR3-223	ENST00000514402	HIRIP3	Q9BW71	556 aa	Predicted RBP	6.61	□□□□□ -1.35
MATR3-223	ENST00000514402	LGR4	Q9BXB1	951 aa		6.61	□□□□□ -1.35
MATR3-223	ENST00000514402	ST7	Q9NRC1	585 aa		6.61	□□□□□ -1.35
MATR3-223	ENST00000514402	MSRB2	Q9Y3D2	182 aa		6.61	□□□□□ -1.35
MATR3-223	ENST00000514402	TIMM13	Q9Y5L4	95 aa	Predicted RBP	6.61	□□□□□ -1.35
MATR3-223	ENST00000514402		A0A1W2PQU0	124 aa		6.6	□□□□□ -1.35
MATR3-223	ENST00000514402	ZC3H12D	A2A288	527 aa	Known RBP	6.6	□□□□□ -1.35
MATR3-223	ENST00000514402	BUB1B	O60566	1050 aa	Predicted RBP	6.6	□□□□□ -1.35
MATR3-223	ENST00000514402	NCAM1	P13591	858 aa		6.6	□□□□□ -1.35
MATR3-223	ENST00000514402	PI3	P19957	117 aa		6.6	□□□□□ -1.35
MATR3-223	ENST00000514402	LTBR	P36941	435 aa		6.6	□□□□□ -1.35
MATR3-223	ENST00000514402	KCNJ6	P48051	423 aa		6.6	□□□□□ -1.35
MATR3-223	ENST00000514402	PRR5	P85299	388 aa		6.6	□□□□□ -1.35
MATR3-223	ENST00000514402	HSP90AA2P	Q14568	343 aa	Predicted RBP	6.6	□□□□□ -1.35
MATR3-223	ENST00000514402	SSPN	Q14714	243 aa		6.6	□□□□□ -1.35
MATR3-223	ENST00000514402	SLC35F1	Q5T1Q4	408 aa		6.6	□□□□□ -1.35
MATR3-223	ENST00000514402	MROH9	Q5TGP6	573 aa		6.6	□□□□□ -1.35
MATR3-223	ENST00000514402	MBLAC2	Q68D91	279 aa		6.6	□□□□□ -1.35
MATR3-223	ENST00000514402	LCNL1	Q6ZST4	164 aa		6.6	□□□□□ -1.35
MATR3-223	ENST00000514402	FAM129C	Q86XR2	697 aa		6.6	□□□□□ -1.35
MATR3-223	ENST00000514402	PPIL6	Q8IXY8	311 aa		6.6	□□□□□ -1.35
MATR3-223	ENST00000514402	TMEFF1	Q8IYR6	380 aa		6.6	□□□□□ -1.35
MATR3-223	ENST00000514402	KCTD13	Q8WZ19	329 aa		6.6	□□□□□ -1.35
MATR3-223	ENST00000514402	DACT3	Q96B18	629 aa	Predicted RBP	6.6	□□□□□ -1.35
MATR3-223	ENST00000514402	C1orf159	Q96HA4	380 aa		6.6	□□□□□ -1.35
MATR3-223	ENST00000514402	RAPGEFL1	Q9UHV5	662 aa		6.6	□□□□□ -1.35
MATR3-223	ENST00000514402	NPFFR2	Q9Y5X5	522 aa		6.6	□□□□□ -1.35
MATR3-223	ENST00000514402	FUCA1	P04066	466 aa		6.59	□□□□□ -1.35
MATR3-223	ENST00000514402	ECI1	P42126	302 aa		6.59	□□□□□ -1.35
MATR3-223	ENST00000514402	SLC6A11	P48066	632 aa		6.59	□□□□□ -1.35
MATR3-223	ENST00000514402	INF2	Q27J81	1249 aa		6.59	□□□□□ -1.35
MATR3-223	ENST00000514402	CNKSR3	Q6P9H4	555 aa		6.59	□□□□□ -1.35
MATR3-223	ENST00000514402	LRRC47	Q8N1G4	583 aa	Known RBP	6.59	□□□□□ -1.35
MATR3-223	ENST00000514402	TMEM145	Q8NBT3	493 aa		6.59	□□□□□ -1.35
MATR3-223	ENST00000514402	CPA5	Q8WXQ8	436 aa		6.59	□□□□□ -1.35
MATR3-223	ENST00000514402	DPF3	Q92784	378 aa		6.59	□□□□□ -1.35
MATR3-223	ENST00000514402	AP5M1	Q9H0R1	490 aa		6.59	□□□□□ -1.35
MATR3-223	ENST00000514402	IRF2BPL	Q9H1B7	796 aa		6.59	□□□□□ -1.35
MATR3-223	ENST00000514402	MARCH2	Q9P0N8	246 aa		6.59	□□□□□ -1.35
MATR3-223	ENST00000514402	FBLN5	Q9UBX5	448 aa		6.59	□□□□□ -1.35
MATR3-223	ENST00000514402		X6R8D5	127 aa		6.59	□□□□□ -1.35
MATR3-223	ENST00000514402	ARID1B	Q8NFD5	2236 aa	Predicted RBP	6.58	□□□□□ -1.36
MATR3-223	ENST00000514402		H7BY64	318 aa		6.58	□□□□□ -1.36
MATR3-223	ENST00000514402	FGFR1	P11362	822 aa		6.58	□□□□□ -1.36
MATR3-223	ENST00000514402	RSPO2	Q6UXX9	243 aa	Predicted RBP	6.58	□□□□□ -1.36
MATR3-223	ENST00000514402	CCDC103	Q8IW40	242 aa		6.58	□□□□□ -1.36
MATR3-223	ENST00000514402	SEC14L1	Q92503	715 aa		6.58	□□□□□ -1.36
MATR3-223	ENST00000514402	ALG3	Q92685	438 aa		6.58	□□□□□ -1.36
MATR3-223	ENST00000514402	AARSD1	Q9BTE6	412 aa	Known RBP	6.58	□□□□□ -1.36
MATR3-223	ENST00000514402	CCDC113	Q9H0I3	377 aa		6.58	□□□□□ -1.36
MATR3-223	ENST00000514402	EPB41L4A	Q9HCS5	686 aa	Predicted RBP	6.58	□□□□□ -1.36
MATR3-223	ENST00000514402	SIRPG	Q9P1W8	387 aa		6.58	□□□□□ -1.36
MATR3-223	ENST00000514402	C22orf46	C9J442	243 aa		6.57	□□□□□ -1.36
MATR3-223	ENST00000514402	NTRK1	P04629	796 aa		6.57	□□□□□ -1.36
MATR3-223	ENST00000514402	AFF3	P51826	1226 aa	Known RBP	6.57	□□□□□ -1.36
MATR3-223	ENST00000514402	RASGRF1	Q13972	1273 aa		6.57	□□□□□ -1.36
MATR3-223	ENST00000514402	SF3A1	Q15459	793 aa	Known RBP	6.57	□□□□□ -1.36
MATR3-223	ENST00000514402	PCDH18	Q9HCL0	1135 aa		6.57	□□□□□ -1.36
MATR3-223	ENST00000514402	TMEFF2	Q9UIK5	374 aa	Predicted RBP	6.57	□□□□□ -1.36
MATR3-223	ENST00000514402	HCFC2	Q9Y5Z7	792 aa		6.57	□□□□□ -1.36
MATR3-223	ENST00000514402	PDPK1	O15530	556 aa		6.56	□□□□□ -1.36
MATR3-223	ENST00000514402	ASGR2	P07307	311 aa		6.56	□□□□□ -1.36
MATR3-223	ENST00000514402	RBL2	Q08999	1139 aa		6.56	□□□□□ -1.36
MATR3-223	ENST00000514402	LSAMP	Q13449	338 aa		6.56	□□□□□ -1.36
MATR3-223	ENST00000514402	SF1	Q15637	639 aa	Known RBP	6.56	□□□□□ -1.36
MATR3-223	ENST00000514402	CHRNA2	Q15822	529 aa		6.56	□□□□□ -1.36
MATR3-223	ENST00000514402	PRSS53	Q2L4Q9	553 aa		6.56	□□□□□ -1.36
MATR3-223	ENST00000514402	SOGA3	Q5TF21	947 aa		6.56	□□□□□ -1.36
MATR3-223	ENST00000514402	DPH6	Q7L8W6	267 aa		6.56	□□□□□ -1.36
MATR3-223	ENST00000514402	LRP10	Q7Z4F1	713 aa		6.56	□□□□□ -1.36
MATR3-223	ENST00000514402	B3GNT8	Q7Z7M8	397 aa		6.56	□□□□□ -1.36
MATR3-223	ENST00000514402	TEX2	Q8IWB9	1127 aa		6.56	□□□□□ -1.36
MATR3-223	ENST00000514402	RCBTB1	Q8NDN9	531 aa		6.56	□□□□□ -1.36
MATR3-223	ENST00000514402	TMEM169	Q96HH4	297 aa		6.56	□□□□□ -1.36
MATR3-223	ENST00000514402	IER2	Q9BTL4	223 aa		6.56	□□□□□ -1.36
MATR3-223	ENST00000514402	GPR27	Q9NS67	375 aa		6.56	□□□□□ -1.36
MATR3-223	ENST00000514402	FAN1	Q9Y2M0	1017 aa		6.56	□□□□□ -1.36

Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms