RNA–Protein interactions for RNA: ENST00000513643.5

RNF4-221, Transcript of ring finger protein 4, humanhuman

TSL 3

Gene RNF4, Length 516 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-221ENST00000513643 KCNA10Q16322 511 aa11.24□□□□□ -0.61
RNF4-221ENST00000513643 BLOC1S2Q6QNY1 142 aa11.24□□□□□ -0.61
RNF4-221ENST00000513643 Q6ZUG5 572 aa11.24□□□□□ -0.61
RNF4-221ENST00000513643 RUFY3Q7L099 469 aa11.24□□□□□ -0.61
RNF4-221ENST00000513643 EEPD1Q7L9B9 569 aa11.24□□□□□ -0.61
RNF4-221ENST00000513643 VSIG10LQ86VR7 867 aa11.24□□□□□ -0.61
RNF4-221ENST00000513643 HOMER1Q86YM7 354 aa11.24□□□□□ -0.61
RNF4-221ENST00000513643 TEX2Q8IWB9 1127 aa11.24□□□□□ -0.61
RNF4-221ENST00000513643 SLC43A3Q8NBI5 491 aa11.24□□□□□ -0.61
RNF4-221ENST00000513643 RRP36Q96EU6 259 aaKnown RBP11.24□□□□□ -0.61
RNF4-221ENST00000513643 RMDN3Q96TC7 470 aa11.24□□□□□ -0.61
RNF4-221ENST00000513643 GDF15Q99988 308 aa11.24□□□□□ -0.61
RNF4-221ENST00000513643 PDCD2LQ9BRP1 358 aa11.24□□□□□ -0.61
RNF4-221ENST00000513643 PXMP2Q9NR77 195 aa11.24□□□□□ -0.61
RNF4-221ENST00000513643 RBM28Q9NW13 759 aaKnown RBP11.24□□□□□ -0.61
RNF4-221ENST00000513643 ELP1O95163 1332 aa11.24□□□□□ -0.61
RNF4-221ENST00000513643 LRRC37A2A6NM11 1700 aa11.23□□□□□ -0.61
RNF4-221ENST00000513643 KLF18A0A0U1RQI7 1052 aa11.23□□□□□ -0.61
RNF4-221ENST00000513643 B4DLN1 442 aa11.23□□□□□ -0.61
RNF4-221ENST00000513643 GCOM1H8Y6P7 765 aaPredicted RBP11.23□□□□□ -0.61
RNF4-221ENST00000513643 EIF3JO75822 258 aaKnown RBP11.23□□□□□ -0.61
RNF4-221ENST00000513643 ARIH2O95376 493 aa11.23□□□□□ -0.61
RNF4-221ENST00000513643 CFBP00751 764 aa11.23□□□□□ -0.61
RNF4-221ENST00000513643 NR3C2P08235 984 aa11.23□□□□□ -0.61
RNF4-221ENST00000513643 POLR2MP0CAP2 368 aa11.23□□□□□ -0.61
RNF4-221ENST00000513643 MRPL12P52815 198 aaKnown RBP11.23□□□□□ -0.61
RNF4-221ENST00000513643 TOB2Q14106 344 aaPredicted RBP11.23□□□□□ -0.61
RNF4-221ENST00000513643 NTRK3Q16288 839 aa11.23□□□□□ -0.61
RNF4-221ENST00000513643 ANKRD33Q7Z3H0 272 aa11.23□□□□□ -0.61
RNF4-221ENST00000513643 MICU3Q86XE3 530 aa11.23□□□□□ -0.61
RNF4-221ENST00000513643 RAB11FIP4Q86YS3 637 aa11.23□□□□□ -0.61
RNF4-221ENST00000513643 PCSK9Q8NBP7 692 aaKnown RBP11.23□□□□□ -0.61
RNF4-221ENST00000513643 SCFD2Q8WU76 684 aa11.23□□□□□ -0.61
RNF4-221ENST00000513643 BRF1Q92994 677 aa11.23□□□□□ -0.61
RNF4-221ENST00000513643 TOX2Q96NM4 488 aa11.23□□□□□ -0.61
RNF4-221ENST00000513643 WDR11Q9BZH6 1224 aa11.23□□□□□ -0.61
RNF4-221ENST00000513643 ALDH8A1Q9H2A2 487 aaPredicted RBP11.23□□□□□ -0.61
RNF4-221ENST00000513643 CNTNAP5Q8WYK1 1306 aa11.23□□□□□ -0.61
RNF4-221ENST00000513643 A6NJR5 290 aa11.22□□□□□ -0.61
RNF4-221ENST00000513643 NKRFO15226 690 aaKnown RBP eCLIP11.22□□□□□ -0.61
RNF4-221ENST00000513643 GRIN2DO15399 1336 aa11.22□□□□□ -0.61
RNF4-221ENST00000513643 DYNC1LI2O43237 492 aaPredicted RBP11.22□□□□□ -0.61
RNF4-221ENST00000513643 SEC24BO95487 1268 aa11.22□□□□□ -0.61
RNF4-221ENST00000513643 ASGR1P07306 291 aa11.22□□□□□ -0.61
RNF4-221ENST00000513643 CASTP20810 708 aaKnown RBP11.22□□□□□ -0.61
RNF4-221ENST00000513643 PDIA3P30101 505 aaKnown RBP11.22□□□□□ -0.61
RNF4-221ENST00000513643 HOXA13P31271 388 aaPredicted RBP11.22□□□□□ -0.61
RNF4-221ENST00000513643 BMP8BP34820 402 aa11.22□□□□□ -0.61
RNF4-221ENST00000513643 ADD1P35611 737 aaKnown RBP11.22□□□□□ -0.61
RNF4-221ENST00000513643 RTP1P59025 263 aa11.22□□□□□ -0.61
RNF4-221ENST00000513643 ANAPC15P60006 121 aa11.22□□□□□ -0.61
RNF4-221ENST00000513643 PDE4DQ08499 809 aa11.22□□□□□ -0.61
RNF4-221ENST00000513643 APOBRQ0VD83 1088 aa11.22□□□□□ -0.61
RNF4-221ENST00000513643 PGM5Q15124 567 aa11.22□□□□□ -0.61
RNF4-221ENST00000513643 STXBP2Q15833 593 aa11.22□□□□□ -0.61
RNF4-221ENST00000513643 RTN1Q16799 776 aa11.22□□□□□ -0.61
RNF4-221ENST00000513643 GNASQ5JWF2 1037 aa11.22□□□□□ -0.61
RNF4-221ENST00000513643 TYW1BQ6NUM6 668 aa11.22□□□□□ -0.61
RNF4-221ENST00000513643 SYNE3Q6ZMZ3 975 aa11.22□□□□□ -0.61
RNF4-221ENST00000513643 TLK2Q86UE8 772 aa11.22□□□□□ -0.61
RNF4-221ENST00000513643 FERMT2Q96AC1 680 aa11.22□□□□□ -0.61
RNF4-221ENST00000513643 MPHOSPH6Q99547 160 aaKnown RBP11.22□□□□□ -0.61
RNF4-221ENST00000513643 COLQQ9Y215 455 aaPredicted RBP11.22□□□□□ -0.61
RNF4-221ENST00000513643 hCG_1642624A0A1W2PR95 340 aa11.21□□□□□ -0.61
RNF4-221ENST00000513643 C6orf222P0C671 652 aaPredicted RBP11.21□□□□□ -0.61
RNF4-221ENST00000513643 EIF2AK2P19525 551 aaKnown RBP11.21□□□□□ -0.61
RNF4-221ENST00000513643 ATN1P54259 1190 aaPredicted RBP11.21□□□□□ -0.61
RNF4-221ENST00000513643 MRPS9P82933 396 aaKnown RBP11.21□□□□□ -0.61
RNF4-221ENST00000513643 BEX3Q00994 111 aa11.21□□□□□ -0.61
RNF4-221ENST00000513643 PKN1Q16512 942 aa11.21□□□□□ -0.61
RNF4-221ENST00000513643 FSCN1Q16658 493 aaKnown RBP11.21□□□□□ -0.61
RNF4-221ENST00000513643 ARHGEF16Q5VV41 709 aa11.21□□□□□ -0.61
RNF4-221ENST00000513643 C7orf61Q8IZ16 206 aa11.21□□□□□ -0.61
RNF4-221ENST00000513643 IL31RAQ8NI17 732 aa11.21□□□□□ -0.61
RNF4-221ENST00000513643 EMID1Q96A84 441 aaPredicted RBP11.21□□□□□ -0.61
RNF4-221ENST00000513643 SPC25Q9HBM1 224 aa11.21□□□□□ -0.61
RNF4-221ENST00000513643 DDX41Q9UJV9 622 aaKnown RBP11.21□□□□□ -0.61
RNF4-221ENST00000513643 V9GY48 417 aaPredicted RBP11.21□□□□□ -0.61
RNF4-221ENST00000513643 MYH6P13533 1939 aa11.21□□□□□ -0.62
RNF4-221ENST00000513643 CCDC196A0A1B0GTZ2 297 aa11.2□□□□□ -0.62
RNF4-221ENST00000513643 GOLGA8AA7E2F4 631 aa11.2□□□□□ -0.62
RNF4-221ENST00000513643 GOLGA8BA8MQT2 603 aa11.2□□□□□ -0.62
RNF4-221ENST00000513643 CABYRO75952 493 aa11.2□□□□□ -0.62
RNF4-221ENST00000513643 TXNP10599 105 aaKnown RBP11.2□□□□□ -0.62
RNF4-221ENST00000513643 TGFB3P10600 412 aa11.2□□□□□ -0.62
RNF4-221ENST00000513643 HOXD8P13378 290 aaPredicted RBP11.2□□□□□ -0.62
RNF4-221ENST00000513643 ICAM3P32942 547 aa11.2□□□□□ -0.62
RNF4-221ENST00000513643 TLE2Q04725 743 aa11.2□□□□□ -0.62
RNF4-221ENST00000513643 ARHGAP1Q07960 439 aa11.2□□□□□ -0.62
RNF4-221ENST00000513643 TTLL4Q14679 1199 aa11.2□□□□□ -0.62
RNF4-221ENST00000513643 TRIM60Q495X7 471 aa11.2□□□□□ -0.62
RNF4-221ENST00000513643 WWC2Q6AWC2 1192 aa11.2□□□□□ -0.62
RNF4-221ENST00000513643 XRRA1Q6P2D8 792 aa11.2□□□□□ -0.62
RNF4-221ENST00000513643 USP17L6PQ6QN14 398 aa11.2□□□□□ -0.62
RNF4-221ENST00000513643 CCDC82Q8N4S0 544 aa11.2□□□□□ -0.62
RNF4-221ENST00000513643 PIBF1Q8WXW3 757 aa11.2□□□□□ -0.62
RNF4-221ENST00000513643 COPS5Q92905 334 aa11.2□□□□□ -0.62
RNF4-221ENST00000513643 ZNF274Q96GC6 653 aaPredicted RBP11.2□□□□□ -0.62
RNF4-221ENST00000513643 INPP4AQ96PE3 977 aaPredicted RBP11.2□□□□□ -0.62
RNF4-221ENST00000513643 SEZ6LQ9BYH1 1024 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 69.9 ms