RNA–Protein interactions for RNA: ENST00000513346.5

TCOF1-211, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,646 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-211ENST00000513346 BIRC3Q13489 604 aa12.31□□□□□ -0.44
TCOF1-211ENST00000513346 IFNL3Q8IZI9 196 aa12.31□□□□□ -0.44
TCOF1-211ENST00000513346 TEKT1Q969V4 418 aa12.31□□□□□ -0.44
TCOF1-211ENST00000513346 SCOCQ9UIL1 159 aa12.31□□□□□ -0.44
TCOF1-211ENST00000513346 HPCAL4Q9UM19 191 aa12.31□□□□□ -0.44
TCOF1-211ENST00000513346 C1orf167Q5SNV9 1468 aa12.31□□□□□ -0.44
TCOF1-211ENST00000513346 KCNQ2O43526 872 aa12.3□□□□□ -0.44
TCOF1-211ENST00000513346 ATP2A2P16615 1042 aaKnown RBP12.3□□□□□ -0.44
TCOF1-211ENST00000513346 EIF3BP55884 814 aaKnown RBP12.3□□□□□ -0.44
TCOF1-211ENST00000513346 EN1Q05925 392 aaPredicted RBP12.3□□□□□ -0.44
TCOF1-211ENST00000513346 DHX9Q08211 1270 aaKnown RBP12.3□□□□□ -0.44
TCOF1-211ENST00000513346 SEPT2Q15019 361 aa12.3□□□□□ -0.44
TCOF1-211ENST00000513346 VPS72Q15906 364 aa12.3□□□□□ -0.44
TCOF1-211ENST00000513346 TCP11X2Q5H9J9 407 aa12.3□□□□□ -0.44
TCOF1-211ENST00000513346 EPHA10Q5JZY3 1008 aa12.3□□□□□ -0.44
TCOF1-211ENST00000513346 CC2D2BQ6DHV5 1058 aa12.3□□□□□ -0.44
TCOF1-211ENST00000513346 DYMQ7RTS9 669 aa12.3□□□□□ -0.44
TCOF1-211ENST00000513346 SDR42E1Q8WUS8 393 aa12.3□□□□□ -0.44
TCOF1-211ENST00000513346 ZNF408Q9H9D4 720 aa12.3□□□□□ -0.44
TCOF1-211ENST00000513346 GPR108Q9NPR9 543 aa12.3□□□□□ -0.44
TCOF1-211ENST00000513346 USP40Q9NVE5 1235 aa12.3□□□□□ -0.44
TCOF1-211ENST00000513346 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.3□□□□□ -0.44
TCOF1-211ENST00000513346 TEX33O43247 280 aa12.3□□□□□ -0.44
TCOF1-211ENST00000513346 PPP1R37O75864 691 aa12.3□□□□□ -0.44
TCOF1-211ENST00000513346 MRPS25P82663 173 aaKnown RBP12.3□□□□□ -0.44
TCOF1-211ENST00000513346 TSGA10IPQ3SY00 556 aa12.3□□□□□ -0.44
TCOF1-211ENST00000513346 PI16Q6UXB8 463 aa12.3□□□□□ -0.44
TCOF1-211ENST00000513346 SEPT14Q6ZU15 432 aa12.3□□□□□ -0.44
TCOF1-211ENST00000513346 CMTR1Q8N1G2 835 aaKnown RBP12.3□□□□□ -0.44
TCOF1-211ENST00000513346 UHMK1Q8TAS1 419 aaKnown RBP12.3□□□□□ -0.44
TCOF1-211ENST00000513346 PIGBQ92521 554 aa12.3□□□□□ -0.44
TCOF1-211ENST00000513346 DHTKD1Q96HY7 919 aaPredicted RBP12.3□□□□□ -0.44
TCOF1-211ENST00000513346 MRPL44Q9H9J2 332 aaKnown RBP12.3□□□□□ -0.44
TCOF1-211ENST00000513346 CTTNBP2NLQ9P2B4 639 aa12.3□□□□□ -0.44
TCOF1-211ENST00000513346 ZBTB7AO95365 584 aa12.3□□□□□ -0.44
TCOF1-211ENST00000513346 TROVE2P10155 538 aaKnown RBP eCLIP12.3□□□□□ -0.44
TCOF1-211ENST00000513346 GCFC2P16383 781 aaKnown RBP12.3□□□□□ -0.44
TCOF1-211ENST00000513346 KRT15P19012 456 aa12.3□□□□□ -0.44
TCOF1-211ENST00000513346 PPARAQ07869 468 aa12.3□□□□□ -0.44
TCOF1-211ENST00000513346 GBP7Q8N8V2 638 aaPredicted RBP12.3□□□□□ -0.44
TCOF1-211ENST00000513346 HDAC6Q9UBN7 1215 aa12.3□□□□□ -0.44
TCOF1-211ENST00000513346 PCDHA13Q9Y5I0 950 aa12.3□□□□□ -0.44
TCOF1-211ENST00000513346 GNA14O95837 355 aa12.3□□□□□ -0.44
TCOF1-211ENST00000513346 EEF2P13639 858 aaKnown RBP12.3□□□□□ -0.44
TCOF1-211ENST00000513346 CUL1Q13616 776 aa12.3□□□□□ -0.44
TCOF1-211ENST00000513346 FAM47AQ5JRC9 791 aa12.3□□□□□ -0.44
TCOF1-211ENST00000513346 MB21D1Q8N884 522 aa12.3□□□□□ -0.44
TCOF1-211ENST00000513346 PAGE5Q96GU1 130 aa12.3□□□□□ -0.44
TCOF1-211ENST00000513346 EPN3Q9H201 632 aa12.3□□□□□ -0.44
TCOF1-211ENST00000513346 DONSONQ9NYP3 566 aa12.3□□□□□ -0.44
TCOF1-211ENST00000513346 ARPP21Q9UBL0 812 aaPredicted RBP12.3□□□□□ -0.44
TCOF1-211ENST00000513346 L1RE1Q9UN81 338 aa12.3□□□□□ -0.44
TCOF1-211ENST00000513346 ATP8A1Q9Y2Q0 1164 aa12.3□□□□□ -0.44
TCOF1-211ENST00000513346 CD2APQ9Y5K6 639 aa12.3□□□□□ -0.44
TCOF1-211ENST00000513346 OVOS2A0A0G2JMS6 1433 aa12.29□□□□□ -0.44
TCOF1-211ENST00000513346 OVOS2A0A0J9YW53 1432 aa12.29□□□□□ -0.44
TCOF1-211ENST00000513346 OVOS2Q6IE36 1432 aa12.29□□□□□ -0.44
TCOF1-211ENST00000513346 CCNT1O60563 726 aaKnown RBP12.29□□□□□ -0.44
TCOF1-211ENST00000513346 PFDN1O60925 122 aa12.29□□□□□ -0.44
TCOF1-211ENST00000513346 CIAO1O76071 339 aa12.29□□□□□ -0.44
TCOF1-211ENST00000513346 FMNL1O95466 1100 aaPredicted RBP12.29□□□□□ -0.44
TCOF1-211ENST00000513346 LONP1P36776 959 aaKnown RBP12.29□□□□□ -0.44
TCOF1-211ENST00000513346 TXKP42681 527 aa12.29□□□□□ -0.44
TCOF1-211ENST00000513346 NBPF10Q6P3W6 841 aaKnown RBP12.29□□□□□ -0.44
TCOF1-211ENST00000513346 CPXCR1Q8N123 301 aa12.29□□□□□ -0.44
TCOF1-211ENST00000513346 RIN2Q8WYP3 895 aaPredicted RBP12.29□□□□□ -0.44
TCOF1-211ENST00000513346 EEF2KMTQ96G04 330 aa12.29□□□□□ -0.44
TCOF1-211ENST00000513346 RUNDC3BQ96NL0 473 aa12.29□□□□□ -0.44
TCOF1-211ENST00000513346 SUGCTQ9HAC7 445 aa12.29□□□□□ -0.44
TCOF1-211ENST00000513346 SBDSQ9Y3A5 250 aaKnown RBP eCLIP12.29□□□□□ -0.44
TCOF1-211ENST00000513346 AK9Q5TCS8 1911 aa12.29□□□□□ -0.44
TCOF1-211ENST00000513346 H3BQF6 201 aa12.29□□□□□ -0.44
TCOF1-211ENST00000513346 EVI5O60447 810 aa12.29□□□□□ -0.44
TCOF1-211ENST00000513346 MMP1P03956 469 aa12.29□□□□□ -0.44
TCOF1-211ENST00000513346 GJC1P36383 396 aa12.29□□□□□ -0.44
TCOF1-211ENST00000513346 EIF4A3P38919 411 aaKnown RBP12.29□□□□□ -0.44
TCOF1-211ENST00000513346 PRKG1Q13976 671 aa12.29□□□□□ -0.44
TCOF1-211ENST00000513346 SLC27A3Q5K4L6 730 aa12.29□□□□□ -0.44
TCOF1-211ENST00000513346 ATP6V1G3Q96LB4 118 aa12.29□□□□□ -0.44
TCOF1-211ENST00000513346 AIFM3Q96NN9 605 aa12.29□□□□□ -0.44
TCOF1-211ENST00000513346 SYNCQ9H7C4 482 aa12.29□□□□□ -0.44
TCOF1-211ENST00000513346 CAMSAP1Q5T5Y3 1602 aa12.29□□□□□ -0.44
TCOF1-211ENST00000513346 PGRMC1O00264 195 aaKnown RBP12.29□□□□□ -0.44
TCOF1-211ENST00000513346 TXNDC9O14530 226 aa12.29□□□□□ -0.44
TCOF1-211ENST00000513346 H2AFZP0C0S5 128 aa12.29□□□□□ -0.44
TCOF1-211ENST00000513346 PTPREP23469 700 aa12.29□□□□□ -0.44
TCOF1-211ENST00000513346 H2AFVQ71UI9 128 aa12.29□□□□□ -0.44
TCOF1-211ENST00000513346 RAB3IL1Q8TBN0 382 aa12.29□□□□□ -0.44
TCOF1-211ENST00000513346 WDR3Q9UNX4 943 aaKnown RBP eCLIP12.29□□□□□ -0.44
TCOF1-211ENST00000513346 LAMC1P11047 1609 aa12.29□□□□□ -0.44
TCOF1-211ENST00000513346 POLR2FP61218 127 aaKnown RBP12.28□□□□□ -0.44
TCOF1-211ENST00000513346 TNFAIP1Q13829 316 aa12.28□□□□□ -0.44
TCOF1-211ENST00000513346 NONOQ15233 471 aaKnown RBP eCLIP12.28□□□□□ -0.44
TCOF1-211ENST00000513346 CCNI2Q6ZMN8 369 aaPredicted RBP12.28□□□□□ -0.44
TCOF1-211ENST00000513346 SMIM5Q71RC9 77 aa12.28□□□□□ -0.44
TCOF1-211ENST00000513346 RASGRP2Q7LDG7 609 aa12.28□□□□□ -0.44
TCOF1-211ENST00000513346 NLRP10Q86W26 655 aa12.28□□□□□ -0.44
TCOF1-211ENST00000513346 TC2NQ8N9U0 490 aa12.28□□□□□ -0.44
TCOF1-211ENST00000513346 LZTS2Q9BRK4 669 aa12.28□□□□□ -0.44
TCOF1-211ENST00000513346 THAP9Q9H5L6 903 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms