RNA–Protein interactions for RNA: ENST00000511774.1

HMGCS1-206, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 4

Gene HMGCS1, Length 500 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-206ENST00000511774 FAM178BQ8IXR5 827 aa22.54■■□□□ 1.2
HMGCS1-206ENST00000511774 GADD45GIP1Q8TAE8 222 aaPredicted RBP22.54■■□□□ 1.2
HMGCS1-206ENST00000511774 CLEC4DQ8WXI8 215 aa22.54■■□□□ 1.2
HMGCS1-206ENST00000511774 GPHNQ9NQX3 736 aaPredicted RBP22.54■■□□□ 1.2
HMGCS1-206ENST00000511774 DDX19BQ9UMR2 479 aa22.54■■□□□ 1.2
HMGCS1-206ENST00000511774 HNRNPUQ00839 825 aaKnown RBP eCLIP22.53■■□□□ 1.2
HMGCS1-206ENST00000511774 ADD3Q9UEY8 706 aaKnown RBP22.53■■□□□ 1.2
HMGCS1-206ENST00000511774 C5orf42Q9H799 3197 aa22.53■■□□□ 1.2
HMGCS1-206ENST00000511774 MYO7AQ13402 2215 aa22.53■■□□□ 1.2
HMGCS1-206ENST00000511774 PTPDC1A2A3K4 754 aa22.52■■□□□ 1.2
HMGCS1-206ENST00000511774 IL9P15248 144 aa22.52■■□□□ 1.2
HMGCS1-206ENST00000511774 EDNRBP24530 442 aa22.52■■□□□ 1.2
HMGCS1-206ENST00000511774 CTDSPL2Q05D32 466 aa22.52■■□□□ 1.2
HMGCS1-206ENST00000511774 BFSP2Q13515 415 aa22.52■■□□□ 1.2
HMGCS1-206ENST00000511774 GDF6Q6KF10 455 aaPredicted RBP22.52■■□□□ 1.2
HMGCS1-206ENST00000511774 LMCD1Q9NZU5 365 aa22.52■■□□□ 1.2
HMGCS1-206ENST00000511774 ZNF318Q5VUA4 2279 aa22.52■■□□□ 1.2
HMGCS1-206ENST00000511774 LINC01553A4QN01 128 aa22.51■■□□□ 1.19
HMGCS1-206ENST00000511774 PRR33A8MZF0 331 aa22.51■■□□□ 1.19
HMGCS1-206ENST00000511774 NBNO60934 754 aa22.51■■□□□ 1.19
HMGCS1-206ENST00000511774 CALML3P27482 149 aa22.51■■□□□ 1.19
HMGCS1-206ENST00000511774 KCNJ6P48051 423 aa22.51■■□□□ 1.19
HMGCS1-206ENST00000511774 NOVP48745 357 aa22.51■■□□□ 1.19
HMGCS1-206ENST00000511774 CHMP4BP1P59074 171 aa22.51■■□□□ 1.19
HMGCS1-206ENST00000511774 PTPN11Q06124 597 aaPredicted RBP22.51■■□□□ 1.19
HMGCS1-206ENST00000511774 PPP2R5BQ15173 497 aa22.51■■□□□ 1.19
HMGCS1-206ENST00000511774 PTGISQ16647 500 aa22.51■■□□□ 1.19
HMGCS1-206ENST00000511774 GJD3Q8N144 294 aa22.51■■□□□ 1.19
HMGCS1-206ENST00000511774 ZFYP08048 801 aaPredicted RBP22.5■■□□□ 1.19
HMGCS1-206ENST00000511774 KCNA5P22460 613 aa22.5■■□□□ 1.19
HMGCS1-206ENST00000511774 ERVK-21P61565 698 aa22.5■■□□□ 1.19
HMGCS1-206ENST00000511774 CCDC96Q2M329 555 aa22.5■■□□□ 1.19
HMGCS1-206ENST00000511774 LEXMQ3ZCV2 418 aa22.5■■□□□ 1.19
HMGCS1-206ENST00000511774 BTNL9Q6UXG8 535 aa22.5■■□□□ 1.19
HMGCS1-206ENST00000511774 KAT2BQ92831 832 aa22.5■■□□□ 1.19
HMGCS1-206ENST00000511774 NAPBQ9H115 298 aa22.5■■□□□ 1.19
HMGCS1-206ENST00000511774 LOC102724159A0A0B4J2E5 919 aa22.49■■□□□ 1.19
HMGCS1-206ENST00000511774 GJB5O95377 273 aa22.49■■□□□ 1.19
HMGCS1-206ENST00000511774 CXCL10P02778 98 aa22.49■■□□□ 1.19
HMGCS1-206ENST00000511774 PWP2Q15269 919 aaKnown RBP22.49■■□□□ 1.19
HMGCS1-206ENST00000511774 SYDE2Q5VT97 1194 aa22.49■■□□□ 1.19
HMGCS1-206ENST00000511774 AFAP1L1Q8TED9 768 aa22.49■■□□□ 1.19
HMGCS1-206ENST00000511774 ZBED2Q9BTP6 218 aa22.49■■□□□ 1.19
HMGCS1-206ENST00000511774 NOD1Q9Y239 953 aa22.49■■□□□ 1.19
HMGCS1-206ENST00000511774 FRMPD2Q68DX3 1309 aaPredicted RBP22.49■■□□□ 1.19
HMGCS1-206ENST00000511774 TSPY2A6NKD2 308 aa22.48■■□□□ 1.19
HMGCS1-206ENST00000511774 NKRFO15226 690 aaKnown RBP eCLIP22.48■■□□□ 1.19
HMGCS1-206ENST00000511774 TXNP10599 105 aaKnown RBP22.48■■□□□ 1.19
HMGCS1-206ENST00000511774 SELPP16109 830 aa22.48■■□□□ 1.19
HMGCS1-206ENST00000511774 RPS6P62753 249 aaKnown RBP22.48■■□□□ 1.19
HMGCS1-206ENST00000511774 PDE4DQ08499 809 aa22.48■■□□□ 1.19
HMGCS1-206ENST00000511774 LRRFIP1Q32MZ4 808 aaKnown RBP22.48■■□□□ 1.19
HMGCS1-206ENST00000511774 TRAF7Q6Q0C0 670 aa22.48■■□□□ 1.19
HMGCS1-206ENST00000511774 LRRC8DQ7L1W4 858 aa22.48■■□□□ 1.19
HMGCS1-206ENST00000511774 SCFD2Q8WU76 684 aa22.48■■□□□ 1.19
HMGCS1-206ENST00000511774 DCAF4Q8WV16 495 aa22.48■■□□□ 1.19
HMGCS1-206ENST00000511774 TGS1Q96RS0 853 aaKnown RBP22.48■■□□□ 1.19
HMGCS1-206ENST00000511774 NACAP1Q9BZK3 213 aa22.48■■□□□ 1.19
HMGCS1-206ENST00000511774 KPNA6O60684 536 aa22.47■■□□□ 1.19
HMGCS1-206ENST00000511774 MRE11P49959 708 aa22.47■■□□□ 1.19
HMGCS1-206ENST00000511774 MBTPS1Q14703 1052 aa22.47■■□□□ 1.19
HMGCS1-206ENST00000511774 BRDTQ58F21 947 aaPredicted RBP22.47■■□□□ 1.19
HMGCS1-206ENST00000511774 FAM117BQ6P1L5 589 aa22.47■■□□□ 1.19
HMGCS1-206ENST00000511774 CCDC62Q6P9F0 684 aa22.47■■□□□ 1.19
HMGCS1-206ENST00000511774 CNKSR3Q6P9H4 555 aa22.47■■□□□ 1.19
HMGCS1-206ENST00000511774 RNF207Q6ZRF8 634 aa22.47■■□□□ 1.19
HMGCS1-206ENST00000511774 CAGE1Q8TC20 777 aa22.47■■□□□ 1.19
HMGCS1-206ENST00000511774 AFG1LQ8WV93 481 aa22.47■■□□□ 1.19
HMGCS1-206ENST00000511774 WNT8BQ93098 351 aa22.47■■□□□ 1.19
HMGCS1-206ENST00000511774 RAD9AQ99638 391 aa22.47■■□□□ 1.19
HMGCS1-206ENST00000511774 GPCPD1Q9NPB8 672 aa22.47■■□□□ 1.19
HMGCS1-206ENST00000511774 RAD50Q92878 1312 aa22.47■■□□□ 1.19
HMGCS1-206ENST00000511774 KIAA1217Q5T5P2 1943 aa22.47■■□□□ 1.19
HMGCS1-206ENST00000511774 MICAL3Q7RTP6 2002 aa22.47■■□□□ 1.19
HMGCS1-206ENST00000511774 SLC3A2P08195 630 aaKnown RBP22.46■■□□□ 1.19
HMGCS1-206ENST00000511774 RBL2Q08999 1139 aa22.46■■□□□ 1.19
HMGCS1-206ENST00000511774 ZMYM1Q5SVZ6 1142 aa22.46■■□□□ 1.19
HMGCS1-206ENST00000511774 SESTD1Q86VW0 696 aa22.46■■□□□ 1.19
HMGCS1-206ENST00000511774 ANKS1AQ92625 1134 aa22.46■■□□□ 1.19
HMGCS1-206ENST00000511774 C17orf80Q9BSJ5 609 aa22.46■■□□□ 1.19
HMGCS1-206ENST00000511774 ATG2AQ2TAZ0 1938 aa22.45■■□□□ 1.18
HMGCS1-206ENST00000511774 MMP3P08254 477 aa22.45■■□□□ 1.18
HMGCS1-206ENST00000511774 MS4A1P11836 297 aa22.45■■□□□ 1.18
HMGCS1-206ENST00000511774 CKBP12277 381 aa22.45■■□□□ 1.18
HMGCS1-206ENST00000511774 ARHGAP1Q07960 439 aa22.45■■□□□ 1.18
HMGCS1-206ENST00000511774 PTCRAQ6ISU1 281 aaPredicted RBP22.45■■□□□ 1.18
HMGCS1-206ENST00000511774 UIMC1Q96RL1 719 aa22.45■■□□□ 1.18
HMGCS1-206ENST00000511774 GRXCR2A6NFK2 248 aa22.44■■□□□ 1.18
HMGCS1-206ENST00000511774 RANBP6O60518 1105 aaKnown RBP22.44■■□□□ 1.18
HMGCS1-206ENST00000511774 SSTR3P32745 418 aaPredicted RBP22.44■■□□□ 1.18
HMGCS1-206ENST00000511774 NHLH1Q02575 133 aa22.44■■□□□ 1.18
HMGCS1-206ENST00000511774 LY6KQ17RY6 165 aa22.44■■□□□ 1.18
HMGCS1-206ENST00000511774 TRIM71Q2Q1W2 868 aaKnown RBP22.44■■□□□ 1.18
HMGCS1-206ENST00000511774 C20orf194Q5TEA3 1177 aa22.44■■□□□ 1.18
HMGCS1-206ENST00000511774 VPS53Q5VIR6 699 aa22.44■■□□□ 1.18
HMGCS1-206ENST00000511774 LIN28BQ6ZN17 250 aaKnown RBP eCLIP22.44■■□□□ 1.184e-9■□□□□ 9.5
HMGCS1-206ENST00000511774 TMEM47Q9BQJ4 181 aa22.44■■□□□ 1.18
HMGCS1-206ENST00000511774 H3BQ06 376 aaPredicted RBP22.43■■□□□ 1.18
HMGCS1-206ENST00000511774 MKRN4PQ13434 485 aaPredicted RBP22.43■■□□□ 1.18
HMGCS1-206ENST00000511774 PPP4R3BQ5MIZ7 849 aa22.43■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms