RNA–Protein interactions for RNA: ENST00000510558.6

SNF8-209, Transcript of SNF8, ESCRT-II complex subunit, humanhuman

TSL 5

Gene SNF8, Length 1,051 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNF8-209ENST00000510558 NECTIN1Q15223 517 aa26.68■■□□□ 1.86
SNF8-209ENST00000510558 CREB3L3Q68CJ9 461 aa26.68■■□□□ 1.86
SNF8-209ENST00000510558 CASC1Q6TDU7 716 aa26.68■■□□□ 1.86
SNF8-209ENST00000510558 PIGSQ96S52 555 aa26.68■■□□□ 1.86
SNF8-209ENST00000510558 MTA3Q9BTC8 594 aa26.68■■□□□ 1.86
SNF8-209ENST00000510558 GPHNQ9NQX3 736 aaPredicted RBP26.68■■□□□ 1.86
SNF8-209ENST00000510558 PCDHA1Q9Y5I3 950 aa26.68■■□□□ 1.86
SNF8-209ENST00000510558 GRIN2DO15399 1336 aa26.67■■□□□ 1.86
SNF8-209ENST00000510558 TIMP1P01033 207 aa26.67■■□□□ 1.86
SNF8-209ENST00000510558 CPT1AP50416 773 aa26.67■■□□□ 1.86
SNF8-209ENST00000510558 HSD17B4P51659 736 aa26.67■■□□□ 1.86
SNF8-209ENST00000510558 FPGSQ05932 587 aa26.67■■□□□ 1.86
SNF8-209ENST00000510558 IWS1Q96ST2 819 aa26.67■■□□□ 1.86
SNF8-209ENST00000510558 POLR3EQ9NVU0 708 aa26.67■■□□□ 1.86
SNF8-209ENST00000510558 CD4P01730 458 aa26.66■■□□□ 1.86
SNF8-209ENST00000510558 TXNP10599 105 aaKnown RBP26.66■■□□□ 1.86
SNF8-209ENST00000510558 MCM5P33992 734 aa26.66■■□□□ 1.86
SNF8-209ENST00000510558 EPHB4P54760 987 aa26.66■■□□□ 1.86
SNF8-209ENST00000510558 PSMC6P62333 389 aa26.66■■□□□ 1.86
SNF8-209ENST00000510558 GHRHRQ02643 423 aa26.66■■□□□ 1.86
SNF8-209ENST00000510558 TTLL4Q14679 1199 aa26.66■■□□□ 1.86
SNF8-209ENST00000510558 ARHGEF16Q5VV41 709 aa26.66■■□□□ 1.86
SNF8-209ENST00000510558 ZNF654Q8IZM8 581 aa26.66■■□□□ 1.86
SNF8-209ENST00000510558 COPS5Q92905 334 aa26.66■■□□□ 1.86
SNF8-209ENST00000510558 DDAH1O94760 285 aa26.65■■□□□ 1.86
SNF8-209ENST00000510558 ARIH2O95376 493 aa26.65■■□□□ 1.86
SNF8-209ENST00000510558 EIF2AK2P19525 551 aaKnown RBP26.65■■□□□ 1.86
SNF8-209ENST00000510558 TRAF1Q13077 416 aa26.65■■□□□ 1.86
SNF8-209ENST00000510558 COL9A3Q14050 684 aaPredicted RBP26.65■■□□□ 1.86
SNF8-209ENST00000510558 STXBP2Q15833 593 aa26.65■■□□□ 1.86
SNF8-209ENST00000510558 TMEM87BQ96K49 555 aa26.65■■□□□ 1.86
SNF8-209ENST00000510558 MAP3K14Q99558 947 aa26.65■■□□□ 1.86
SNF8-209ENST00000510558 MYL10Q9BUA6 226 aa26.65■■□□□ 1.86
SNF8-209ENST00000510558 SEZ6LQ9BYH1 1024 aa26.65■■□□□ 1.86
SNF8-209ENST00000510558 PXMP2Q9NR77 195 aa26.65■■□□□ 1.86
SNF8-209ENST00000510558 MAP3K20Q9NYL2 800 aaKnown RBP26.65■■□□□ 1.86
SNF8-209ENST00000510558 SCN10AQ9Y5Y9 1956 aa26.64■■□□□ 1.86
SNF8-209ENST00000510558 PNMA6FA0A0J9YX94 578 aa26.64■■□□□ 1.86
SNF8-209ENST00000510558 SH2B2O14492 632 aaPredicted RBP26.64■■□□□ 1.86
SNF8-209ENST00000510558 MYL3P08590 195 aa26.64■■□□□ 1.86
SNF8-209ENST00000510558 PURAQ00577 322 aaKnown RBP26.64■■□□□ 1.86
SNF8-209ENST00000510558 BRDTQ58F21 947 aaPredicted RBP26.64■■□□□ 1.86
SNF8-209ENST00000510558 SEPT14Q6ZU15 432 aa26.64■■□□□ 1.86
SNF8-209ENST00000510558 Q7L0L9 218 aa26.64■■□□□ 1.86
SNF8-209ENST00000510558 DEFB123Q8N688 67 aa26.64■■□□□ 1.86
SNF8-209ENST00000510558 CTCFLQ8NI51 663 aaPredicted RBP26.64■■□□□ 1.86
SNF8-209ENST00000510558 MFSD5Q6N075 450 aa26.63■■□□□ 1.85
SNF8-209ENST00000510558 CCDC62Q6P9F0 684 aa26.63■■□□□ 1.85
SNF8-209ENST00000510558 NFXL1Q6ZNB6 911 aa26.63■■□□□ 1.85
SNF8-209ENST00000510558 TMTC2Q8N394 836 aa26.63■■□□□ 1.85
SNF8-209ENST00000510558 SAMD3Q8N6K7 520 aa26.63■■□□□ 1.85
SNF8-209ENST00000510558 CCDC136Q96JN2 1154 aa26.63■■□□□ 1.85
SNF8-209ENST00000510558 PPP1R12CQ9BZL4 782 aa26.63■■□□□ 1.85
SNF8-209ENST00000510558 CDC45O75419 566 aa26.62■■□□□ 1.85
SNF8-209ENST00000510558 NR3C2P08235 984 aa26.62■■□□□ 1.85
SNF8-209ENST00000510558 KIF5BP33176 963 aa26.62■■□□□ 1.85
SNF8-209ENST00000510558 MTG1Q9BT17 334 aaPredicted RBP26.62■■□□□ 1.85
SNF8-209ENST00000510558 CCDC69A6NI79 296 aa26.61■■□□□ 1.85
SNF8-209ENST00000510558 A6NJR5 290 aa26.61■■□□□ 1.85
SNF8-209ENST00000510558 B4GALT4O60513 344 aa26.61■■□□□ 1.85
SNF8-209ENST00000510558 HOXA13P31271 388 aaPredicted RBP26.61■■□□□ 1.85
SNF8-209ENST00000510558 RNF20Q5VTR2 975 aa26.61■■□□□ 1.85
SNF8-209ENST00000510558 PIBF1Q8WXW3 757 aa26.61■■□□□ 1.85
SNF8-209ENST00000510558 RNPC3Q96LT9 517 aaKnown RBP26.61■■□□□ 1.85
SNF8-209ENST00000510558 SPZ1Q9BXG8 430 aa26.61■■□□□ 1.85
SNF8-209ENST00000510558 GCOM1H8Y6P7 765 aaPredicted RBP26.6■■□□□ 1.85
SNF8-209ENST00000510558 EIF3JO75822 258 aaKnown RBP26.6■■□□□ 1.85
SNF8-209ENST00000510558 POLR2MP0CAP2 368 aa26.6■■□□□ 1.85
SNF8-209ENST00000510558 LIFRP42702 1097 aa26.6■■□□□ 1.85
SNF8-209ENST00000510558 PPIGQ13427 754 aaKnown RBP eCLIP26.6■■□□□ 1.853e-7■■□□□ 12
SNF8-209ENST00000510558 LY6KQ17RY6 165 aa26.6■■□□□ 1.85
SNF8-209ENST00000510558 PDCD2LQ9BRP1 358 aa26.6■■□□□ 1.85
SNF8-209ENST00000510558 TRPV6Q9H1D0 765 aa26.6■■□□□ 1.85
SNF8-209ENST00000510558 MYH7BA7E2Y1 1941 aa26.6■■□□□ 1.85
SNF8-209ENST00000510558 KPNA6O60684 536 aa26.59■■□□□ 1.85
SNF8-209ENST00000510558 GH1P01241 217 aa26.59■■□□□ 1.85
SNF8-209ENST00000510558 TMEM199Q8N511 208 aa26.59■■□□□ 1.85
SNF8-209ENST00000510558 LRRC2Q9BYS8 371 aa26.59■■□□□ 1.85
SNF8-209ENST00000510558 ALDH8A1Q9H2A2 487 aaPredicted RBP26.59■■□□□ 1.85
SNF8-209ENST00000510558 HIPK3Q9H422 1215 aa26.59■■□□□ 1.85
SNF8-209ENST00000510558 CSF2RAP15509 400 aa26.58■■□□□ 1.85
SNF8-209ENST00000510558 SMARCA1P28370 1054 aa26.58■■□□□ 1.85
SNF8-209ENST00000510558 CYP2C18P33260 490 aa26.58■■□□□ 1.85
SNF8-209ENST00000510558 ARHGAP1Q07960 439 aa26.58■■□□□ 1.85
SNF8-209ENST00000510558 LZTS2Q9BRK4 669 aa26.58■■□□□ 1.85
SNF8-209ENST00000510558 MTMR10Q9NXD2 777 aa26.58■■□□□ 1.85
SNF8-209ENST00000510558 PLEKHA8P1O95397 391 aa26.57■■□□□ 1.84
SNF8-209ENST00000510558 CALM1P0DP23 149 aa26.57■■□□□ 1.84
SNF8-209ENST00000510558 CALM2P0DP24 149 aa26.57■■□□□ 1.84
SNF8-209ENST00000510558 CALM3P0DP25 149 aa26.57■■□□□ 1.84
SNF8-209ENST00000510558 MYCLP12524 364 aaPredicted RBP26.57■■□□□ 1.84
SNF8-209ENST00000510558 RXRAP19793 462 aa26.57■■□□□ 1.84
SNF8-209ENST00000510558 GNAQP50148 359 aa26.57■■□□□ 1.84
SNF8-209ENST00000510558 PGM5Q15124 567 aa26.57■■□□□ 1.84
SNF8-209ENST00000510558 FAM109BQ6ICB4 259 aaPredicted RBP26.57■■□□□ 1.84
SNF8-209ENST00000510558 FCHSD1Q86WN1 690 aa26.57■■□□□ 1.84
SNF8-209ENST00000510558 AFG1LQ8WV93 481 aa26.57■■□□□ 1.84
SNF8-209ENST00000510558 RRP36Q96EU6 259 aaKnown RBP26.57■■□□□ 1.84
SNF8-209ENST00000510558 DDX41Q9UJV9 622 aaKnown RBP26.57■■□□□ 1.84
SNF8-209ENST00000510558 MRVI1Q9Y6F6 885 aa26.57■■□□□ 1.84
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms