RNA–Protein interactions for RNA: ENST00000508501.5

LIMCH1-208, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,054 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-208ENST00000508501 ATP6V0A4Q9HBG4 840 aa12.14□□□□□ -0.47
LIMCH1-208ENST00000508501 SLC38A10Q9HBR0 1119 aa12.14□□□□□ -0.47
LIMCH1-208ENST00000508501 ABCB6Q9NP58 842 aa12.14□□□□□ -0.47
LIMCH1-208ENST00000508501 RNF103-CHMP3A0A140T963 221 aa12.14□□□□□ -0.47
LIMCH1-208ENST00000508501 GCNT3O95395 438 aa12.14□□□□□ -0.47
LIMCH1-208ENST00000508501 ADCY7P51828 1080 aa12.14□□□□□ -0.47
LIMCH1-208ENST00000508501 PLTPP55058 493 aa12.14□□□□□ -0.47
LIMCH1-208ENST00000508501 CC2D1AQ6P1N0 951 aaPredicted RBP12.14□□□□□ -0.47
LIMCH1-208ENST00000508501 HDDC2Q7Z4H3 204 aa12.14□□□□□ -0.47
LIMCH1-208ENST00000508501 PATL1Q86TB9 770 aaKnown RBP12.14□□□□□ -0.47
LIMCH1-208ENST00000508501 TERB1Q8NA31 727 aa12.14□□□□□ -0.47
LIMCH1-208ENST00000508501 VIPAS39Q9H9C1 493 aa12.14□□□□□ -0.47
LIMCH1-208ENST00000508501 IL1RAPL1Q9NZN1 696 aa12.14□□□□□ -0.47
LIMCH1-208ENST00000508501 SENP1Q9P0U3 644 aa12.14□□□□□ -0.47
LIMCH1-208ENST00000508501 ZMYND8Q9ULU4 1186 aaPredicted RBP12.14□□□□□ -0.47
LIMCH1-208ENST00000508501 MAPK8IP1Q9UQF2 711 aa12.14□□□□□ -0.47
LIMCH1-208ENST00000508501 CCNT1O60563 726 aaKnown RBP12.13□□□□□ -0.47
LIMCH1-208ENST00000508501 ZRANB2O95218 330 aaKnown RBP eCLIP12.13□□□□□ -0.47
LIMCH1-208ENST00000508501 ZBED6P86452 979 aa12.13□□□□□ -0.47
LIMCH1-208ENST00000508501 KLC3Q6P597 504 aa12.13□□□□□ -0.47
LIMCH1-208ENST00000508501 LMBR1LQ6UX01 489 aa12.13□□□□□ -0.47
LIMCH1-208ENST00000508501 PDIK1LQ8N165 341 aa12.13□□□□□ -0.47
LIMCH1-208ENST00000508501 DSCC1Q9BVC3 393 aa12.13□□□□□ -0.47
LIMCH1-208ENST00000508501 MRPL47Q9HD33 250 aaKnown RBP12.13□□□□□ -0.47
LIMCH1-208ENST00000508501 MCM9Q9NXL9 1143 aa12.13□□□□□ -0.47
LIMCH1-208ENST00000508501 LAD1O00515 517 aa12.13□□□□□ -0.47
LIMCH1-208ENST00000508501 CDH2P19022 906 aaPredicted RBP12.13□□□□□ -0.47
LIMCH1-208ENST00000508501 TAC1P20366 129 aa12.13□□□□□ -0.47
LIMCH1-208ENST00000508501 TXKP42681 527 aa12.13□□□□□ -0.47
LIMCH1-208ENST00000508501 INAQ16352 499 aa12.13□□□□□ -0.47
LIMCH1-208ENST00000508501 SIRT1Q96EB6 747 aa12.13□□□□□ -0.47
LIMCH1-208ENST00000508501 FANCLQ9NW38 375 aa12.13□□□□□ -0.47
LIMCH1-208ENST00000508501 SEMA3EO15041 775 aa12.13□□□□□ -0.47
LIMCH1-208ENST00000508501 GUCY1A3Q02108 690 aa12.13□□□□□ -0.47
LIMCH1-208ENST00000508501 PLS1Q14651 629 aa12.13□□□□□ -0.47
LIMCH1-208ENST00000508501 SGO2Q562F6 1265 aa12.13□□□□□ -0.47
LIMCH1-208ENST00000508501 TBRG4Q969Z0 631 aaKnown RBP eCLIP12.13□□□□□ -0.47
LIMCH1-208ENST00000508501 NUDCD1Q96RS6 583 aa12.13□□□□□ -0.47
LIMCH1-208ENST00000508501 CCDC134Q9H6E4 229 aa12.13□□□□□ -0.47
LIMCH1-208ENST00000508501 ATG3Q9NT62 314 aa12.13□□□□□ -0.47
LIMCH1-208ENST00000508501 USP40Q9NVE5 1235 aa12.13□□□□□ -0.47
LIMCH1-208ENST00000508501 CDV3Q9UKY7 258 aaKnown RBP12.13□□□□□ -0.47
LIMCH1-208ENST00000508501 CTIFO43310 598 aaKnown RBP12.13□□□□□ -0.47
LIMCH1-208ENST00000508501 ATF7P17544 494 aaPredicted RBP12.13□□□□□ -0.47
LIMCH1-208ENST00000508501 ABCB4P21439 1286 aa12.13□□□□□ -0.47
LIMCH1-208ENST00000508501 MRPS25P82663 173 aaKnown RBP12.13□□□□□ -0.47
LIMCH1-208ENST00000508501 RAPH1Q70E73 1250 aa12.13□□□□□ -0.47
LIMCH1-208ENST00000508501 POMGNT1Q8WZA1 660 aa12.13□□□□□ -0.47
LIMCH1-208ENST00000508501 BUB1O43683 1085 aa12.12□□□□□ -0.47
LIMCH1-208ENST00000508501 KRT38O76015 456 aa12.12□□□□□ -0.47
LIMCH1-208ENST00000508501 PDHA1P08559 390 aa12.12□□□□□ -0.47
LIMCH1-208ENST00000508501 PPP2R2AP63151 447 aa12.12□□□□□ -0.47
LIMCH1-208ENST00000508501 TFAP4Q01664 338 aa12.12□□□□□ -0.47
LIMCH1-208ENST00000508501 PTK2Q05397 1052 aa12.12□□□□□ -0.47
LIMCH1-208ENST00000508501 DAB2IPQ5VWQ8 1189 aa12.12□□□□□ -0.47
LIMCH1-208ENST00000508501 BSPRYQ5W0U4 402 aa12.12□□□□□ -0.47
LIMCH1-208ENST00000508501 TRMT44Q8IYL2 757 aaKnown RBP12.12□□□□□ -0.47
LIMCH1-208ENST00000508501 DDI1Q8WTU0 396 aa12.12□□□□□ -0.47
LIMCH1-208ENST00000508501 GINS4Q9BRT9 223 aa12.12□□□□□ -0.47
LIMCH1-208ENST00000508501 DCDC2Q9UHG0 476 aa12.12□□□□□ -0.47
LIMCH1-208ENST00000508501 ARL2BPQ9Y2Y0 163 aa12.12□□□□□ -0.47
LIMCH1-208ENST00000508501 SYNJ2O15056 1496 aa12.12□□□□□ -0.47
LIMCH1-208ENST00000508501 MIF4GDA9UHW6 222 aaKnown RBP12.12□□□□□ -0.47
LIMCH1-208ENST00000508501 NVLO15381 856 aaKnown RBP12.12□□□□□ -0.47
LIMCH1-208ENST00000508501 PPP6R2O75170 966 aa12.12□□□□□ -0.47
LIMCH1-208ENST00000508501 MAP4P27816 1152 aaKnown RBP12.12□□□□□ -0.47
LIMCH1-208ENST00000508501 HSPA13P48723 471 aa12.12□□□□□ -0.47
LIMCH1-208ENST00000508501 DAB2P98082 770 aa12.12□□□□□ -0.47
LIMCH1-208ENST00000508501 BRDTQ58F21 947 aaPredicted RBP12.12□□□□□ -0.47
LIMCH1-208ENST00000508501 LUZP2Q86TE4 346 aa12.12□□□□□ -0.47
LIMCH1-208ENST00000508501 NLRP14Q86W24 1093 aa12.12□□□□□ -0.47
LIMCH1-208ENST00000508501 CHMP6Q96FZ7 201 aa12.12□□□□□ -0.47
LIMCH1-208ENST00000508501 CYTH2Q99418 400 aa12.12□□□□□ -0.47
LIMCH1-208ENST00000508501 ASPSCR1Q9BZE9 553 aa12.12□□□□□ -0.47
LIMCH1-208ENST00000508501 ZBTB3Q9H5J0 574 aa12.12□□□□□ -0.47
LIMCH1-208ENST00000508501 PPARGC1AQ9UBK2 798 aaKnown RBP12.12□□□□□ -0.47
LIMCH1-208ENST00000508501 DENND2AQ9ULE3 1009 aa12.12□□□□□ -0.47
LIMCH1-208ENST00000508501 L3MBTL1Q9Y468 752 aa12.12□□□□□ -0.47
LIMCH1-208ENST00000508501 E2F6O75461 281 aa12.12□□□□□ -0.47
LIMCH1-208ENST00000508501 TRAPPC10P48553 1259 aa12.12□□□□□ -0.47
LIMCH1-208ENST00000508501 AARSP49588 968 aaKnown RBP eCLIP12.12□□□□□ -0.47
LIMCH1-208ENST00000508501 DNAL1Q4LDG9 190 aa12.12□□□□□ -0.47
LIMCH1-208ENST00000508501 CDC37L1Q7L3B6 337 aa12.12□□□□□ -0.47
LIMCH1-208ENST00000508501 PCGF5Q86SE9 256 aa12.12□□□□□ -0.47
LIMCH1-208ENST00000508501 TLK2Q86UE8 772 aa12.12□□□□□ -0.47
LIMCH1-208ENST00000508501 CASP10Q92851 521 aa12.12□□□□□ -0.47
LIMCH1-208ENST00000508501 TRIM45Q9H8W5 580 aaPredicted RBP12.12□□□□□ -0.47
LIMCH1-208ENST00000508501 ATP8A2Q9NTI2 1148 aa12.12□□□□□ -0.47
LIMCH1-208ENST00000508501 HESX1Q9UBX0 185 aa12.12□□□□□ -0.47
LIMCH1-208ENST00000508501 COL4A3BPQ9Y5P4 624 aa12.12□□□□□ -0.47
LIMCH1-208ENST00000508501 TMEM191CA6NGB0 347 aa12.12□□□□□ -0.47
LIMCH1-208ENST00000508501 LRRIQ3A6PVS8 624 aaPredicted RBP12.12□□□□□ -0.47
LIMCH1-208ENST00000508501 H3BRJ5 948 aa12.12□□□□□ -0.47
LIMCH1-208ENST00000508501 H7C0C1 242 aa12.12□□□□□ -0.47
LIMCH1-208ENST00000508501 TMEM191BP0C7N4 346 aa12.12□□□□□ -0.47
LIMCH1-208ENST00000508501 ATP5OP48047 213 aa12.12□□□□□ -0.47
LIMCH1-208ENST00000508501 MFAP3P55082 362 aa12.12□□□□□ -0.47
LIMCH1-208ENST00000508501 KLHL38Q2WGJ6 581 aa12.12□□□□□ -0.47
LIMCH1-208ENST00000508501 AKNAD1Q5T1N1 836 aa12.12□□□□□ -0.47
LIMCH1-208ENST00000508501 SARM1Q6SZW1 724 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms