RNA–Protein interactions for RNA: ENST00000506063.1

TCOF1-208, Transcript of treacle ribosome biogenesis factor 1, human

TSL 4

Gene TCOF1, Length 526 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TCOF1-208	ENST00000506063	ERVK-5	Q9HDB9	667 aa		4.19	□□□□□ -1.74
TCOF1-208	ENST00000506063	PALD1	Q9ULE6	856 aa		4.19	□□□□□ -1.74
TCOF1-208	ENST00000506063	RIPK3	Q9Y572	518 aa		4.19	□□□□□ -1.74
TCOF1-208	ENST00000506063	DYNC1LI1	Q9Y6G9	523 aa	Known RBP	4.19	□□□□□ -1.74
TCOF1-208	ENST00000506063	DDX49	Q9Y6V7	483 aa	Known RBP	4.19	□□□□□ -1.74
TCOF1-208	ENST00000506063	SPAG17	Q6Q759	2223 aa		4.19	□□□□□ -1.74
TCOF1-208	ENST00000506063	LOXHD1	Q8IVV2	1947 aa		4.19	□□□□□ -1.74
TCOF1-208	ENST00000506063	GREB1L	Q9C091	1923 aa	Predicted RBP	4.19	□□□□□ -1.74
TCOF1-208	ENST00000506063	FLT1	P17948	1338 aa		4.19	□□□□□ -1.74
TCOF1-208	ENST00000506063	PDS5A	Q29RF7	1337 aa	Known RBP	4.19	□□□□□ -1.74
TCOF1-208	ENST00000506063	APC2	O95996	2303 aa		4.18	□□□□□ -1.74
TCOF1-208	ENST00000506063	ABCA12	Q86UK0	2595 aa		4.18	□□□□□ -1.74
TCOF1-208	ENST00000506063	LOC101059915	A0A1B0GWI6	518 aa	Predicted RBP	4.18	□□□□□ -1.74
TCOF1-208	ENST00000506063	GRM8	O00222	908 aa		4.18	□□□□□ -1.74
TCOF1-208	ENST00000506063	SEMA3E	O15041	775 aa		4.18	□□□□□ -1.74
TCOF1-208	ENST00000506063	DYNC1LI2	O43237	492 aa	Predicted RBP	4.18	□□□□□ -1.74
TCOF1-208	ENST00000506063	GLUL	P15104	373 aa		4.18	□□□□□ -1.74
TCOF1-208	ENST00000506063	NCL	P19338	710 aa	Known RBP	4.18	□□□□□ -1.74
TCOF1-208	ENST00000506063	BMPR1A	P36894	532 aa		4.18	□□□□□ -1.74
TCOF1-208	ENST00000506063	TNFAIP2	Q03169	654 aa		4.18	□□□□□ -1.74
TCOF1-208	ENST00000506063	FLII	Q13045	1269 aa		4.18	□□□□□ -1.74
TCOF1-208	ENST00000506063	BFSP2	Q13515	415 aa		4.18	□□□□□ -1.74
TCOF1-208	ENST00000506063	TRIM71	Q2Q1W2	868 aa	Known RBP	4.18	□□□□□ -1.74
TCOF1-208	ENST00000506063	TAPT1	Q6NXT6	567 aa		4.18	□□□□□ -1.74
TCOF1-208	ENST00000506063	NFRKB	Q6P4R8	1299 aa		4.18	□□□□□ -1.74
TCOF1-208	ENST00000506063	ZC3H14	Q6PJT7	736 aa	Known RBP	4.18	□□□□□ -1.74
TCOF1-208	ENST00000506063	LRRC8D	Q7L1W4	858 aa		4.18	□□□□□ -1.74
TCOF1-208	ENST00000506063	ATG9A	Q7Z3C6	839 aa		4.18	□□□□□ -1.74
TCOF1-208	ENST00000506063	TEX11	Q8IYF3	940 aa		4.18	□□□□□ -1.74
TCOF1-208	ENST00000506063	FAM133A	Q8N9E0	248 aa		4.18	□□□□□ -1.74
TCOF1-208	ENST00000506063	RETREG2	Q8NC44	543 aa		4.18	□□□□□ -1.74
TCOF1-208	ENST00000506063	NETO1	Q8TDF5	533 aa		4.18	□□□□□ -1.74
TCOF1-208	ENST00000506063	AFAP1L1	Q8TED9	768 aa		4.18	□□□□□ -1.74
TCOF1-208	ENST00000506063	NELL1	Q92832	810 aa		4.18	□□□□□ -1.74
TCOF1-208	ENST00000506063	CLP1	Q92989	425 aa	Known RBP	4.18	□□□□□ -1.74
TCOF1-208	ENST00000506063	WNT8B	Q93098	351 aa		4.18	□□□□□ -1.74
TCOF1-208	ENST00000506063	TOP1MT	Q969P6	601 aa		4.18	□□□□□ -1.74
TCOF1-208	ENST00000506063	RTP3	Q9BQQ7	232 aa		4.18	□□□□□ -1.74
TCOF1-208	ENST00000506063	OSBPL7	Q9BZF2	842 aa		4.18	□□□□□ -1.74
TCOF1-208	ENST00000506063	TANGO6	Q9C0B7	1094 aa		4.18	□□□□□ -1.74
TCOF1-208	ENST00000506063	MFSD1	Q9H3U5	465 aa		4.18	□□□□□ -1.74
TCOF1-208	ENST00000506063	PDGFC	Q9NRA1	345 aa		4.18	□□□□□ -1.74
TCOF1-208	ENST00000506063	FBXO28	Q9NVF7	368 aa		4.18	□□□□□ -1.74
TCOF1-208	ENST00000506063	NCDN	Q9UBB6	729 aa		4.18	□□□□□ -1.74
TCOF1-208	ENST00000506063	DENND2A	Q9ULE3	1009 aa		4.18	□□□□□ -1.74
TCOF1-208	ENST00000506063	PLAGL2	Q9UPG8	496 aa		4.18	□□□□□ -1.74
TCOF1-208	ENST00000506063	RELN	P78509	3460 aa		4.18	□□□□□ -1.74
TCOF1-208	ENST00000506063	PCNX2	A6NKB5	2137 aa		4.18	□□□□□ -1.74
TCOF1-208	ENST00000506063	FNDC1	Q4ZHG4	1894 aa	Predicted RBP	4.18	□□□□□ -1.74
TCOF1-208	ENST00000506063	MYO9A	B2RTY4	2548 aa		4.17	□□□□□ -1.74
TCOF1-208	ENST00000506063	KRBA1	A5PL33	1030 aa		4.17	□□□□□ -1.74
TCOF1-208	ENST00000506063	TMEM8B	A6NDV4	472 aa		4.17	□□□□□ -1.74
TCOF1-208	ENST00000506063		F6X3S4	739 aa		4.17	□□□□□ -1.74
TCOF1-208	ENST00000506063	VWA5A	O00534	786 aa		4.17	□□□□□ -1.74
TCOF1-208	ENST00000506063	GDF9	O60383	454 aa		4.17	□□□□□ -1.74
TCOF1-208	ENST00000506063	KIN	O60870	393 aa	Known RBP	4.17	□□□□□ -1.74
TCOF1-208	ENST00000506063	LILRB5	O75023	590 aa		4.17	□□□□□ -1.74
TCOF1-208	ENST00000506063	EFCAB14	O75071	495 aa		4.17	□□□□□ -1.74
TCOF1-208	ENST00000506063	FLOT1	O75955	427 aa		4.17	□□□□□ -1.74
TCOF1-208	ENST00000506063	C1QL1	O75973	258 aa		4.17	□□□□□ -1.74
TCOF1-208	ENST00000506063	CSPG5	O95196	566 aa		4.17	□□□□□ -1.74
TCOF1-208	ENST00000506063	CAPNS1	P04632	268 aa		4.17	□□□□□ -1.74
TCOF1-208	ENST00000506063	RB1	P06400	928 aa		4.17	□□□□□ -1.74
TCOF1-208	ENST00000506063	CKB	P12277	381 aa		4.17	□□□□□ -1.74
TCOF1-208	ENST00000506063	SELP	P16109	830 aa		4.17	□□□□□ -1.74
TCOF1-208	ENST00000506063	ADORA1	P30542	326 aa		4.17	□□□□□ -1.74
TCOF1-208	ENST00000506063	SHMT1	P34896	483 aa		4.17	□□□□□ -1.74
TCOF1-208	ENST00000506063	CTNNB1	P35222	781 aa		4.17	□□□□□ -1.74
TCOF1-208	ENST00000506063	STAT3	P40763	770 aa		4.17	□□□□□ -1.74
TCOF1-208	ENST00000506063	MCAM	P43121	646 aa		4.17	□□□□□ -1.74
TCOF1-208	ENST00000506063	RFX5	P48382	616 aa	Predicted RBP	4.17	□□□□□ -1.74
TCOF1-208	ENST00000506063	NRIP1	P48552	1158 aa		4.17	□□□□□ -1.74
TCOF1-208	ENST00000506063	IKBKE	Q14164	716 aa		4.17	□□□□□ -1.74
TCOF1-208	ENST00000506063	SEPT2	Q15019	361 aa		4.17	□□□□□ -1.74
TCOF1-208	ENST00000506063	RAB3GAP1	Q15042	981 aa		4.17	□□□□□ -1.74
TCOF1-208	ENST00000506063	NEUROD2	Q15784	382 aa		4.17	□□□□□ -1.74
TCOF1-208	ENST00000506063	TMEM184A	Q6ZMB5	413 aa		4.17	□□□□□ -1.74
TCOF1-208	ENST00000506063	ADGRA1	Q86SQ6	560 aa		4.17	□□□□□ -1.74
TCOF1-208	ENST00000506063	ZBTB33	Q86T24	672 aa		4.17	□□□□□ -1.74
TCOF1-208	ENST00000506063	MAPKAPK5	Q8IW41	473 aa		4.17	□□□□□ -1.74
TCOF1-208	ENST00000506063	MYOCD	Q8IZQ8	938 aa		4.17	□□□□□ -1.74
TCOF1-208	ENST00000506063	ZBTB44	Q8NCP5	570 aa		4.17	□□□□□ -1.74
TCOF1-208	ENST00000506063	CAGE1	Q8TC20	777 aa		4.17	□□□□□ -1.74
TCOF1-208	ENST00000506063	CRBN	Q96SW2	442 aa		4.17	□□□□□ -1.74
TCOF1-208	ENST00000506063	C11orf84	Q9BUA3	381 aa	Predicted RBP	4.17	□□□□□ -1.74
TCOF1-208	ENST00000506063	EPC1	Q9H2F5	836 aa		4.17	□□□□□ -1.74
TCOF1-208	ENST00000506063	PNN	Q9H307	717 aa	Known RBP	4.17	□□□□□ -1.74
TCOF1-208	ENST00000506063	POMK	Q9H5K3	350 aa		4.17	□□□□□ -1.74
TCOF1-208	ENST00000506063	ABCF2	Q9UG63	623 aa		4.17	□□□□□ -1.74
TCOF1-208	ENST00000506063	SMG5	Q9UPR3	1016 aa	Known RBP	4.17	□□□□□ -1.74
TCOF1-208	ENST00000506063		Q9Y3F1	56 aa		4.17	□□□□□ -1.74
TCOF1-208	ENST00000506063	GPSM3	Q9Y4H4	160 aa		4.17	□□□□□ -1.74
TCOF1-208	ENST00000506063	DOPEY2	Q9Y3R5	2298 aa		4.17	□□□□□ -1.74
TCOF1-208	ENST00000506063	IL16	Q14005	1332 aa		4.17	□□□□□ -1.74
TCOF1-208	ENST00000506063	COL6A6	A6NMZ7	2263 aa		4.16	□□□□□ -1.74
TCOF1-208	ENST00000506063	UBR5	O95071	2799 aa	Predicted RBP	4.16	□□□□□ -1.74
TCOF1-208	ENST00000506063	LOC105378220	A0A1B0GUY1	285 aa	Predicted RBP	4.16	□□□□□ -1.74
TCOF1-208	ENST00000506063	SPTLC1	O15269	473 aa		4.16	□□□□□ -1.74
TCOF1-208	ENST00000506063	ZEB2	O60315	1214 aa		4.16	□□□□□ -1.74
TCOF1-208	ENST00000506063	PARN	O95453	639 aa	Known RBP	4.16	□□□□□ -1.74

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