RNA–Protein interactions for RNA: ENST00000497026.5

CSMD3-208, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 1,406 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-208ENST00000497026 PRKAR2BP31323 418 aa6.4□□□□□ -1.39
CSMD3-208ENST00000497026 CAMK2GQ13555 558 aaPredicted RBP6.4□□□□□ -1.39
CSMD3-208ENST00000497026 ITPK1Q13572 414 aa6.4□□□□□ -1.39
CSMD3-208ENST00000497026 ATG4DQ86TL0 474 aaPredicted RBP6.4□□□□□ -1.39
CSMD3-208ENST00000497026 MRPL41Q8IXM3 137 aaKnown RBP6.4□□□□□ -1.39
CSMD3-208ENST00000497026 FAM168AQ92567 244 aa6.4□□□□□ -1.39
CSMD3-208ENST00000497026 SMARCC1Q92922 1105 aaPredicted RBP6.4□□□□□ -1.39
CSMD3-208ENST00000497026 PHACTR3Q96KR7 559 aa6.4□□□□□ -1.39
CSMD3-208ENST00000497026 CFAP53Q96M91 514 aa6.4□□□□□ -1.39
CSMD3-208ENST00000497026 ZSWIM5Q9P217 1185 aa6.4□□□□□ -1.39
CSMD3-208ENST00000497026 C4AP0C0L4 1744 aa6.4□□□□□ -1.39
CSMD3-208ENST00000497026 WASH4PA8MWX3 477 aa6.39□□□□□ -1.39
CSMD3-208ENST00000497026 RNMTO43148 476 aaKnown RBP6.39□□□□□ -1.39
CSMD3-208ENST00000497026 GRIN3BO60391 1043 aa6.39□□□□□ -1.39
CSMD3-208ENST00000497026 ZBTB7AO95365 584 aa6.39□□□□□ -1.39
CSMD3-208ENST00000497026 BPNT1O95861 308 aa6.39□□□□□ -1.39
CSMD3-208ENST00000497026 ZNF865P0CJ78 1059 aaPredicted RBP6.39□□□□□ -1.39
CSMD3-208ENST00000497026 PDE4BQ07343 736 aa6.39□□□□□ -1.39
CSMD3-208ENST00000497026 RALBP1Q15311 655 aa6.39□□□□□ -1.39
CSMD3-208ENST00000497026 FBLN7Q53RD9 439 aa6.39□□□□□ -1.39
CSMD3-208ENST00000497026 RELL1Q8IUW5 271 aa6.39□□□□□ -1.39
CSMD3-208ENST00000497026 LINC00116Q8NCU8 138 aa6.39□□□□□ -1.39
CSMD3-208ENST00000497026 CEMIPQ8WUJ3 1361 aa6.39□□□□□ -1.39
CSMD3-208ENST00000497026 UBE2FQ969M7 185 aa6.39□□□□□ -1.39
CSMD3-208ENST00000497026 MAP3K5Q99683 1374 aa6.39□□□□□ -1.39
CSMD3-208ENST00000497026 SLC52A2Q9HAB3 445 aa6.39□□□□□ -1.39
CSMD3-208ENST00000497026 ST14Q9Y5Y6 855 aa6.39□□□□□ -1.39
CSMD3-208ENST00000497026 MYBBP1AQ9BQG0 1328 aaKnown RBP6.38□□□□□ -1.39
CSMD3-208ENST00000497026 FAM221AA4D161 298 aa6.38□□□□□ -1.39
CSMD3-208ENST00000497026 CILPO75339 1184 aa6.38□□□□□ -1.39
CSMD3-208ENST00000497026 U2AF1L5P0DN76 240 aaPredicted RBP6.38□□□□□ -1.39
CSMD3-208ENST00000497026 U2AF1Q01081 240 aaKnown RBP eCLIP6.38□□□□□ -1.39
CSMD3-208ENST00000497026 LMNB2Q03252 620 aa6.38□□□□□ -1.39
CSMD3-208ENST00000497026 TNK2Q07912 1038 aa6.38□□□□□ -1.39
CSMD3-208ENST00000497026 ZNF648Q5T619 568 aaPredicted RBP6.38□□□□□ -1.39
CSMD3-208ENST00000497026 SLC6A19Q695T7 634 aa6.38□□□□□ -1.39
CSMD3-208ENST00000497026 SMIM5Q71RC9 77 aa6.38□□□□□ -1.39
CSMD3-208ENST00000497026 COL23A1Q86Y22 540 aaPredicted RBP6.38□□□□□ -1.39
CSMD3-208ENST00000497026 MCATQ8IVS2 390 aaKnown RBP6.38□□□□□ -1.39
CSMD3-208ENST00000497026 IL17REQ8NFR9 667 aa6.38□□□□□ -1.39
CSMD3-208ENST00000497026 FBXO27Q8NI29 283 aa6.38□□□□□ -1.39
CSMD3-208ENST00000497026 TMEM74Q96NL1 305 aa6.38□□□□□ -1.39
CSMD3-208ENST00000497026 PRKRIP1Q9H875 184 aaPredicted RBP6.38□□□□□ -1.39
CSMD3-208ENST00000497026 SPON1Q9HCB6 807 aa6.38□□□□□ -1.39
CSMD3-208ENST00000497026 COPRSQ9NQ92 184 aa6.38□□□□□ -1.39
CSMD3-208ENST00000497026 NUDCQ9Y266 331 aa6.38□□□□□ -1.39
CSMD3-208ENST00000497026 TACC3Q9Y6A5 838 aa6.38□□□□□ -1.39
CSMD3-208ENST00000497026 KDM3BQ7LBC6 1761 aa6.38□□□□□ -1.39
CSMD3-208ENST00000497026 TLR3O15455 904 aaKnown RBP6.37□□□□□ -1.39
CSMD3-208ENST00000497026 SLC39A6Q13433 755 aa6.37□□□□□ -1.39
CSMD3-208ENST00000497026 SNAP47Q5SQN1 464 aa6.37□□□□□ -1.39
CSMD3-208ENST00000497026 FYB2Q5VWT5 728 aa6.37□□□□□ -1.39
CSMD3-208ENST00000497026 FAM13CQ8NE31 585 aa6.37□□□□□ -1.39
CSMD3-208ENST00000497026 GIPC2Q8TF65 315 aa6.37□□□□□ -1.39
CSMD3-208ENST00000497026 GATAD2BQ8WXI9 593 aa6.37□□□□□ -1.39
CSMD3-208ENST00000497026 RHOVQ96L33 236 aa6.37□□□□□ -1.39
CSMD3-208ENST00000497026 PLEKHF1Q96S99 279 aa6.37□□□□□ -1.39
CSMD3-208ENST00000497026 MTFR1LQ9H019 292 aa6.37□□□□□ -1.39
CSMD3-208ENST00000497026 TFCP2L1Q9NZI6 479 aa6.37□□□□□ -1.39
CSMD3-208ENST00000497026 CYP7A1P22680 504 aa6.36□□□□□ -1.39
CSMD3-208ENST00000497026 LCE4AQ5TA78 99 aa6.36□□□□□ -1.39
CSMD3-208ENST00000497026 ZNF746Q6NUN9 644 aaPredicted RBP6.36□□□□□ -1.39
CSMD3-208ENST00000497026 C22orf34Q6ZV56 151 aa6.36□□□□□ -1.39
CSMD3-208ENST00000497026 GOLM1Q8NBJ4 401 aa6.36□□□□□ -1.39
CSMD3-208ENST00000497026 DNAJB8Q8NHS0 232 aa6.36□□□□□ -1.39
CSMD3-208ENST00000497026 Q96M66 194 aa6.36□□□□□ -1.39
CSMD3-208ENST00000497026 BCL2L13Q9BXK5 485 aa6.36□□□□□ -1.39
CSMD3-208ENST00000497026 KBTBD4Q9NVX7 518 aa6.36□□□□□ -1.39
CSMD3-208ENST00000497026 KLHL3Q9UH77 587 aa6.36□□□□□ -1.39
CSMD3-208ENST00000497026 ADAM30Q9UKF2 790 aa6.36□□□□□ -1.39
CSMD3-208ENST00000497026 CTNND2Q9UQB3 1225 aa6.36□□□□□ -1.39
CSMD3-208ENST00000497026 POLR3KQ9Y2Y1 108 aaPredicted RBP6.36□□□□□ -1.39
CSMD3-208ENST00000497026 CHURC1-FNTBB4DL54 471 aa6.35□□□□□ -1.39
CSMD3-208ENST00000497026 LRRN2O75325 713 aa6.35□□□□□ -1.39
CSMD3-208ENST00000497026 ETV3P41162 512 aa6.35□□□□□ -1.39
CSMD3-208ENST00000497026 DCTN1Q14203 1278 aa6.35□□□□□ -1.39
CSMD3-208ENST00000497026 PPP1R13LQ8WUF5 828 aa6.35□□□□□ -1.39
CSMD3-208ENST00000497026 RSRP1Q9BUV0 290 aa6.35□□□□□ -1.39
CSMD3-208ENST00000497026 REV1Q9UBZ9 1251 aa6.35□□□□□ -1.39
CSMD3-208ENST00000497026 CEP131Q9UPN4 1083 aa6.35□□□□□ -1.39
CSMD3-208ENST00000497026 ZNF124Q15973 351 aa6.34□□□□□ -1.39
CSMD3-208ENST00000497026 MCM10Q7L590 875 aa6.34□□□□□ -1.39
CSMD3-208ENST00000497026 CCDC84Q86UT8 332 aaPredicted RBP6.34□□□□□ -1.39
CSMD3-208ENST00000497026 ZSWIM9Q86XI8 627 aa6.34□□□□□ -1.39
CSMD3-208ENST00000497026 DNAJC10Q8IXB1 793 aa6.34□□□□□ -1.39
CSMD3-208ENST00000497026 FLAD1Q8NFF5 587 aa6.34□□□□□ -1.39
CSMD3-208ENST00000497026 PKNOX2Q96KN3 472 aa6.34□□□□□ -1.39
CSMD3-208ENST00000497026 LMCD1Q9NZU5 365 aa6.34□□□□□ -1.39
CSMD3-208ENST00000497026 SLAMF8Q9P0V8 285 aa6.34□□□□□ -1.39
CSMD3-208ENST00000497026 LAMB4A4D0S4 1761 aa6.34□□□□□ -1.39
CSMD3-208ENST00000497026 KIAA1551Q9HCM1 1747 aa6.34□□□□□ -1.39
CSMD3-208ENST00000497026 HEG1Q9ULI3 1381 aa6.34□□□□□ -1.39
CSMD3-208ENST00000497026 KIF13BQ9NQT8 1826 aa6.34□□□□□ -1.39
CSMD3-208ENST00000497026 KCNQ3O43525 872 aa6.33□□□□□ -1.4
CSMD3-208ENST00000497026 DNAJA2O60884 412 aa6.33□□□□□ -1.4
CSMD3-208ENST00000497026 ERCC3P19447 782 aa6.33□□□□□ -1.4
CSMD3-208ENST00000497026 KIR3DL1P43629 444 aa6.33□□□□□ -1.4
CSMD3-208ENST00000497026 CRKLP46109 303 aaKnown RBP6.33□□□□□ -1.4
CSMD3-208ENST00000497026 TNNI2P48788 182 aa6.33□□□□□ -1.4
CSMD3-208ENST00000497026 TEFQ10587 303 aa6.33□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms