RNA–Protein interactions for RNA: ENST00000496385.5

HPS4-217, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 2

Gene HPS4, Length 2,772 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-217ENST00000496385 NDST4Q9H3R1 872 aa10.02□□□□□ -0.81
HPS4-217ENST00000496385 TAF1DQ9H5J8 278 aaPredicted RBP10.02□□□□□ -0.81
HPS4-217ENST00000496385 ZNHIT6Q9NWK9 470 aaKnown RBP10.02□□□□□ -0.81
HPS4-217ENST00000496385 SLC12A4Q9UP95 1085 aa10.02□□□□□ -0.81
HPS4-217ENST00000496385 PA2G4Q9UQ80 394 aaKnown RBP10.02□□□□□ -0.81
HPS4-217ENST00000496385 SCN7AQ01118 1682 aa10.02□□□□□ -0.81
HPS4-217ENST00000496385 CCT8L1PA6NM43 557 aa10.02□□□□□ -0.81
HPS4-217ENST00000496385 LINGO3P0C6S8 592 aa10.02□□□□□ -0.81
HPS4-217ENST00000496385 POLD1P28340 1107 aa10.02□□□□□ -0.81
HPS4-217ENST00000496385 ITIH4Q14624 930 aa10.02□□□□□ -0.81
HPS4-217ENST00000496385 AGBL2Q5U5Z8 902 aa10.02□□□□□ -0.81
HPS4-217ENST00000496385 HAUS3Q68CZ6 603 aa10.02□□□□□ -0.81
HPS4-217ENST00000496385 GIGYF2Q6Y7W6 1299 aaKnown RBP10.02□□□□□ -0.81
HPS4-217ENST00000496385 CCDC129Q6ZRS4 1044 aa10.02□□□□□ -0.81
HPS4-217ENST00000496385 MAATS1Q7Z4T9 603 aa10.02□□□□□ -0.81
HPS4-217ENST00000496385 PLBD2Q8NHP8 589 aa10.02□□□□□ -0.81
HPS4-217ENST00000496385 HAUS7Q99871 368 aa10.02□□□□□ -0.81
HPS4-217ENST00000496385 PPANQ9NQ55 473 aaKnown RBP10.02□□□□□ -0.81
HPS4-217ENST00000496385 PLCB1Q9NQ66 1216 aa10.02□□□□□ -0.81
HPS4-217ENST00000496385 CWC25Q9NXE8 425 aaPredicted RBP10.02□□□□□ -0.81
HPS4-217ENST00000496385 RASSF10A6NK89 507 aa10.01□□□□□ -0.81
HPS4-217ENST00000496385 POLRMTO00411 1230 aaKnown RBP10.01□□□□□ -0.81
HPS4-217ENST00000496385 TACC1O75410 805 aa10.01□□□□□ -0.81
HPS4-217ENST00000496385 NPTXRO95502 500 aa10.01□□□□□ -0.81
HPS4-217ENST00000496385 VIMP08670 466 aaKnown RBP10.01□□□□□ -0.81
HPS4-217ENST00000496385 TM4SF1P30408 202 aa10.01□□□□□ -0.81
HPS4-217ENST00000496385 KIF5BP33176 963 aa10.01□□□□□ -0.81
HPS4-217ENST00000496385 RBM5P52756 815 aaKnown RBP eCLIP10.01□□□□□ -0.81
HPS4-217ENST00000496385 C8orf74Q6P047 294 aa10.01□□□□□ -0.81
HPS4-217ENST00000496385 SPATA21Q7Z572 469 aa10.01□□□□□ -0.81
HPS4-217ENST00000496385 ZNF570Q96NI8 536 aa10.01□□□□□ -0.81
HPS4-217ENST00000496385 SGIP1Q9BQI5 828 aa10.01□□□□□ -0.81
HPS4-217ENST00000496385 SERTAD1Q9UHV2 236 aa10.01□□□□□ -0.81
HPS4-217ENST00000496385 TSKSQ9UJT2 592 aa10.01□□□□□ -0.81
HPS4-217ENST00000496385 ZNF652Q9Y2D9 606 aa10.01□□□□□ -0.81
HPS4-217ENST00000496385 LUC7L2Q9Y383 392 aaKnown RBP10.01□□□□□ -0.81
HPS4-217ENST00000496385 BCORQ6W2J9 1755 aa10.01□□□□□ -0.81
HPS4-217ENST00000496385 OPLAHO14841 1288 aa10.01□□□□□ -0.81
HPS4-217ENST00000496385 FOXN1O15353 648 aa10.01□□□□□ -0.81
HPS4-217ENST00000496385 ACTN4O43707 911 aaKnown RBP10.01□□□□□ -0.81
HPS4-217ENST00000496385 SERPINB2P05120 415 aa10.01□□□□□ -0.81
HPS4-217ENST00000496385 HSPA9P38646 679 aaKnown RBP10.01□□□□□ -0.81
HPS4-217ENST00000496385 COPB1P53618 953 aaKnown RBP10.01□□□□□ -0.81
HPS4-217ENST00000496385 CDK17Q00537 523 aa10.01□□□□□ -0.81
HPS4-217ENST00000496385 SNX1Q13596 522 aa10.01□□□□□ -0.81
HPS4-217ENST00000496385 LBRQ14739 615 aaKnown RBP10.01□□□□□ -0.81
HPS4-217ENST00000496385 SUSD4Q5VX71 490 aa10.01□□□□□ -0.81
HPS4-217ENST00000496385 KSR2Q6VAB6 950 aa10.01□□□□□ -0.81
HPS4-217ENST00000496385 ARHGAP22Q7Z5H3 698 aa10.01□□□□□ -0.81
HPS4-217ENST00000496385 KBTBD3Q8NAB2 608 aa10.01□□□□□ -0.81
HPS4-217ENST00000496385 FAM81AQ8TBF8 368 aa10.01□□□□□ -0.81
HPS4-217ENST00000496385 SMCR8Q8TEV9 937 aaPredicted RBP10.01□□□□□ -0.81
HPS4-217ENST00000496385 PIK3R5Q8WYR1 880 aa10.01□□□□□ -0.81
HPS4-217ENST00000496385 CHP1Q99653 195 aa10.01□□□□□ -0.81
HPS4-217ENST00000496385 YIPF3Q9GZM5 350 aa10.01□□□□□ -0.81
HPS4-217ENST00000496385 CNOT10Q9H9A5 744 aaKnown RBP10.01□□□□□ -0.81
HPS4-217ENST00000496385 TRIM10Q9UDY6 481 aa10.01□□□□□ -0.81
HPS4-217ENST00000496385 CAPN11Q9UMQ6 739 aa10.01□□□□□ -0.81
HPS4-217ENST00000496385 HYOU1Q9Y4L1 999 aa10.01□□□□□ -0.81
HPS4-217ENST00000496385 ABCC12Q96J65 1359 aa10□□□□□ -0.81
HPS4-217ENST00000496385 ARFGEF2Q9Y6D5 1785 aa10□□□□□ -0.81
HPS4-217ENST00000496385 GCOM1H8Y6P7 765 aaPredicted RBP10□□□□□ -0.81
HPS4-217ENST00000496385 POLR2DO15514 142 aaKnown RBP10□□□□□ -0.81
HPS4-217ENST00000496385 USO1O60763 962 aaKnown RBP10□□□□□ -0.81
HPS4-217ENST00000496385 DDX58O95786 925 aaKnown RBP10□□□□□ -0.81
HPS4-217ENST00000496385 MYZAPP0CAP1 466 aa10□□□□□ -0.81
HPS4-217ENST00000496385 ATP4AP20648 1035 aa10□□□□□ -0.81
HPS4-217ENST00000496385 MRPS35P82673 323 aaKnown RBP10□□□□□ -0.81
HPS4-217ENST00000496385 KIF5AQ12840 1032 aa10□□□□□ -0.81
HPS4-217ENST00000496385 DYNC1I2Q13409 638 aaKnown RBP10□□□□□ -0.81
HPS4-217ENST00000496385 BYSLQ13895 437 aaKnown RBP10□□□□□ -0.81
HPS4-217ENST00000496385 KRT31Q15323 416 aa10□□□□□ -0.81
HPS4-217ENST00000496385 TTF1Q15361 905 aaPredicted RBP10□□□□□ -0.81
HPS4-217ENST00000496385 SGSM1Q2NKQ1 1148 aa10□□□□□ -0.81
HPS4-217ENST00000496385 RETREG2Q8NC44 543 aa10□□□□□ -0.81
HPS4-217ENST00000496385 HDAC7Q8WUI4 952 aa10□□□□□ -0.81
HPS4-217ENST00000496385 TLR7Q9NYK1 1049 aaKnown RBP10□□□□□ -0.81
HPS4-217ENST00000496385 ANAPC4Q9UJX5 808 aa10□□□□□ -0.81
HPS4-217ENST00000496385 HPS5Q9UPZ3 1129 aa10□□□□□ -0.81
HPS4-217ENST00000496385 LRRD1A4D1F6 860 aa10□□□□□ -0.81
HPS4-217ENST00000496385 SPDYE3A6NKU9 549 aa10□□□□□ -0.81
HPS4-217ENST00000496385 ERVV-1B6SEH8 477 aa10□□□□□ -0.81
HPS4-217ENST00000496385 ORC4O43929 436 aa10□□□□□ -0.81
HPS4-217ENST00000496385 TCIRG1Q13488 830 aa10□□□□□ -0.81
HPS4-217ENST00000496385 ZMYM1Q5SVZ6 1142 aa10□□□□□ -0.81
HPS4-217ENST00000496385 KRT40Q6A162 431 aa10□□□□□ -0.81
HPS4-217ENST00000496385 CCDC197Q8NCU1 140 aa10□□□□□ -0.81
HPS4-217ENST00000496385 IQCDQ96DY2 449 aa10□□□□□ -0.81
HPS4-217ENST00000496385 ALG1Q9BT22 464 aa10□□□□□ -0.81
HPS4-217ENST00000496385 FHDC1Q9C0D6 1143 aaPredicted RBP10□□□□□ -0.81
HPS4-217ENST00000496385 KCNMB3Q9NPA1 279 aa10□□□□□ -0.81
HPS4-217ENST00000496385 CEP131Q9UPN4 1083 aa10□□□□□ -0.81
HPS4-217ENST00000496385 DDX60Q8IY21 1712 aaKnown RBP9.99□□□□□ -0.81
HPS4-217ENST00000496385 ZNF185O15231 689 aa9.99□□□□□ -0.81
HPS4-217ENST00000496385 ASAP2O43150 1006 aa9.99□□□□□ -0.81
HPS4-217ENST00000496385 PPP2R2AP63151 447 aa9.99□□□□□ -0.81
HPS4-217ENST00000496385 TRIM29Q14134 588 aa9.99□□□□□ -0.81
HPS4-217ENST00000496385 SPRED3Q2MJR0 410 aa9.99□□□□□ -0.81
HPS4-217ENST00000496385 CPLX4Q7Z7G2 160 aa9.99□□□□□ -0.81
HPS4-217ENST00000496385 NCAPG2Q86XI2 1143 aa9.99□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms