RNA–Protein interactions for RNA: ENST00000496189.1

SF3A1-209, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 693 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-209ENST00000496189 RBM27Q9P2N5 1060 aaKnown RBP18.87■□□□□ 0.61
SF3A1-209ENST00000496189 Q9Y3F1 56 aa18.87■□□□□ 0.61
SF3A1-209ENST00000496189 PDE4DIPQ5VU43 2346 aa18.86■□□□□ 0.61
SF3A1-209ENST00000496189 LCTP09848 1927 aa18.86■□□□□ 0.61
SF3A1-209ENST00000496189 EDNRBP24530 442 aa18.86■□□□□ 0.61
SF3A1-209ENST00000496189 HOXA13P31271 388 aaPredicted RBP18.86■□□□□ 0.61
SF3A1-209ENST00000496189 GJA9P57773 515 aa18.86■□□□□ 0.61
SF3A1-209ENST00000496189 TTLL4Q14679 1199 aa18.86■□□□□ 0.61
SF3A1-209ENST00000496189 GNASQ5JWF2 1037 aa18.86■□□□□ 0.61
SF3A1-209ENST00000496189 FCHSD1Q86WN1 690 aa18.86■□□□□ 0.61
SF3A1-209ENST00000496189 IL17RAQ96F46 866 aa18.86■□□□□ 0.61
SF3A1-209ENST00000496189 C22orf23Q9BZE7 217 aa18.86■□□□□ 0.61
SF3A1-209ENST00000496189 UPF3BQ9BZI7 483 aaKnown RBP18.86■□□□□ 0.61
SF3A1-209ENST00000496189 PXMP2Q9NR77 195 aa18.86■□□□□ 0.61
SF3A1-209ENST00000496189 PDRG1Q9NUG6 133 aa18.86■□□□□ 0.61
SF3A1-209ENST00000496189 BAZ2BQ9UIF8 2168 aaKnown RBP18.86■□□□□ 0.61
SF3A1-209ENST00000496189 ADAMTS4O75173 837 aa18.85■□□□□ 0.61
SF3A1-209ENST00000496189 CST5P28325 142 aaPredicted RBP18.85■□□□□ 0.61
SF3A1-209ENST00000496189 ATN1P54259 1190 aaPredicted RBP18.85■□□□□ 0.61
SF3A1-209ENST00000496189 DUSP28Q4G0W2 176 aa18.85■□□□□ 0.61
SF3A1-209ENST00000496189 TAPT1Q6NXT6 567 aa18.85■□□□□ 0.61
SF3A1-209ENST00000496189 CPLX2Q6PUV4 134 aaKnown RBP18.85■□□□□ 0.61
SF3A1-209ENST00000496189 C7orf61Q8IZ16 206 aa18.85■□□□□ 0.61
SF3A1-209ENST00000496189 VTI1AQ96AJ9 217 aa18.85■□□□□ 0.61
SF3A1-209ENST00000496189 GLT1D1Q96MS3 346 aa18.85■□□□□ 0.61
SF3A1-209ENST00000496189 AGXT2Q9BYV1 514 aa18.85■□□□□ 0.61
SF3A1-209ENST00000496189 UPF3AQ9H1J1 476 aaKnown RBP18.85■□□□□ 0.61
SF3A1-209ENST00000496189 PSTPIP2Q9H939 334 aa18.85■□□□□ 0.61
SF3A1-209ENST00000496189 EHMT1Q9H9B1 1298 aa18.85■□□□□ 0.61
SF3A1-209ENST00000496189 PDGFCQ9NRA1 345 aa18.85■□□□□ 0.61
SF3A1-209ENST00000496189 PRKAG2Q9UGJ0 569 aa18.85■□□□□ 0.61
SF3A1-209ENST00000496189 PHF24Q9UPV7 400 aa18.85■□□□□ 0.61
SF3A1-209ENST00000496189 LRRC37A2A6NM11 1700 aa18.85■□□□□ 0.61
SF3A1-209ENST00000496189 CNTNAP5Q8WYK1 1306 aa18.84■□□□□ 0.61
SF3A1-209ENST00000496189 C11orf97A0A1B0GVM6 126 aaPredicted RBP18.84■□□□□ 0.61
SF3A1-209ENST00000496189 CPLX1O14810 134 aa18.84■□□□□ 0.61
SF3A1-209ENST00000496189 OPLAHO14841 1288 aa18.84■□□□□ 0.61
SF3A1-209ENST00000496189 DYNC1LI2O43237 492 aaPredicted RBP18.84■□□□□ 0.61
SF3A1-209ENST00000496189 EIF3JO75822 258 aaKnown RBP18.84■□□□□ 0.61
SF3A1-209ENST00000496189 NR3C2P08235 984 aa18.84■□□□□ 0.61
SF3A1-209ENST00000496189 TXNP10599 105 aaKnown RBP18.84■□□□□ 0.61
SF3A1-209ENST00000496189 MYCLP12524 364 aaPredicted RBP18.84■□□□□ 0.61
SF3A1-209ENST00000496189 SMPD1P17405 629 aa18.84■□□□□ 0.61
SF3A1-209ENST00000496189 CCND2P30279 289 aa18.84■□□□□ 0.61
SF3A1-209ENST00000496189 ACLYP53396 1101 aa18.84■□□□□ 0.61
SF3A1-209ENST00000496189 NAPAP54920 295 aa18.84■□□□□ 0.61
SF3A1-209ENST00000496189 ANKRD1Q15327 319 aa18.84■□□□□ 0.61
SF3A1-209ENST00000496189 PPP1R18Q6NYC8 613 aa18.84■□□□□ 0.61
SF3A1-209ENST00000496189 FERMT2Q96AC1 680 aa18.84■□□□□ 0.61
SF3A1-209ENST00000496189 GLT8D2Q9H1C3 349 aa18.84■□□□□ 0.61
SF3A1-209ENST00000496189 STARD7Q9NQZ5 370 aa18.84■□□□□ 0.61
SF3A1-209ENST00000496189 COL20A1Q9P218 1284 aa18.84■□□□□ 0.61
SF3A1-209ENST00000496189 DDX49Q9Y6V7 483 aaKnown RBP18.84■□□□□ 0.61
SF3A1-209ENST00000496189 V9GY48 417 aaPredicted RBP18.84■□□□□ 0.61
SF3A1-209ENST00000496189 A0A1W2PQ45 241 aaPredicted RBP18.83■□□□□ 0.6
SF3A1-209ENST00000496189 A0A1W2PQY0 241 aa18.83■□□□□ 0.6
SF3A1-209ENST00000496189 hCG_1642624A0A1W2PR95 340 aa18.83■□□□□ 0.6
SF3A1-209ENST00000496189 RBM47A0AV96 593 aaKnown RBP18.83■□□□□ 0.6
SF3A1-209ENST00000496189 SPDYE3A6NKU9 549 aa18.83■□□□□ 0.6
SF3A1-209ENST00000496189 CPT1AP50416 773 aa18.83■□□□□ 0.6
SF3A1-209ENST00000496189 KCNA10Q16322 511 aa18.83■□□□□ 0.6
SF3A1-209ENST00000496189 KCNV1Q6PIU1 500 aa18.83■□□□□ 0.6
SF3A1-209ENST00000496189 SEPT14Q6ZU15 432 aa18.83■□□□□ 0.6
SF3A1-209ENST00000496189 TEX2Q8IWB9 1127 aa18.83■□□□□ 0.6
SF3A1-209ENST00000496189 CCDC12Q8WUD4 166 aaPredicted RBP18.83■□□□□ 0.6
SF3A1-209ENST00000496189 PDCD2LQ9BRP1 358 aa18.83■□□□□ 0.6
SF3A1-209ENST00000496189 GNEQ9Y223 722 aaKnown RBP18.83■□□□□ 0.6
SF3A1-209ENST00000496189 NID2Q14112 1375 aa18.82■□□□□ 0.6
SF3A1-209ENST00000496189 PIK3CDO00329 1044 aa18.82■□□□□ 0.6
SF3A1-209ENST00000496189 CABYRO75952 493 aa18.82■□□□□ 0.6
SF3A1-209ENST00000496189 ASGR1P07306 291 aa18.82■□□□□ 0.6
SF3A1-209ENST00000496189 CDC27P30260 824 aa18.82■□□□□ 0.6
SF3A1-209ENST00000496189 ADD1P35611 737 aaKnown RBP18.82■□□□□ 0.6
SF3A1-209ENST00000496189 RBM25P49756 843 aaKnown RBP18.82■□□□□ 0.6
SF3A1-209ENST00000496189 PGM5Q15124 567 aa18.82■□□□□ 0.6
SF3A1-209ENST00000496189 FSCN1Q16658 493 aaKnown RBP18.82■□□□□ 0.6
SF3A1-209ENST00000496189 LRRC26Q2I0M4 334 aa18.82■□□□□ 0.6
SF3A1-209ENST00000496189 GNPTABQ3T906 1256 aa18.82■□□□□ 0.6
SF3A1-209ENST00000496189 SLC39A5Q6ZMH5 540 aa18.82■□□□□ 0.6
SF3A1-209ENST00000496189 TRIM22Q8IYM9 498 aa18.82■□□□□ 0.6
SF3A1-209ENST00000496189 KLHDC9Q8NEP7 349 aa18.82■□□□□ 0.6
SF3A1-209ENST00000496189 OR6J1Q8NGC5 347 aa18.82■□□□□ 0.6
SF3A1-209ENST00000496189 GPKOWQ92917 476 aaPredicted RBP eCLIP18.82■□□□□ 0.6
SF3A1-209ENST00000496189 ZNF274Q96GC6 653 aaPredicted RBP18.82■□□□□ 0.6
SF3A1-209ENST00000496189 ALDH8A1Q9H2A2 487 aaPredicted RBP18.82■□□□□ 0.6
SF3A1-209ENST00000496189 ATP11BQ9Y2G3 1177 aa18.82■□□□□ 0.6
SF3A1-209ENST00000496189 MRVI1Q9Y6F6 885 aa18.82■□□□□ 0.6
SF3A1-209ENST00000496189 MKI67P46013 3256 aaKnown RBP18.82■□□□□ 0.6
SF3A1-209ENST00000496189 H0YGN5 161 aa18.81■□□□□ 0.6
SF3A1-209ENST00000496189 ADCY6O43306 1168 aa18.81■□□□□ 0.6
SF3A1-209ENST00000496189 STAM2O75886 525 aa18.81■□□□□ 0.6
SF3A1-209ENST00000496189 PDIA3P30101 505 aaKnown RBP18.81■□□□□ 0.6
SF3A1-209ENST00000496189 NEK4P51957 841 aa18.81■□□□□ 0.6
SF3A1-209ENST00000496189 EVCP57679 992 aa18.81■□□□□ 0.6
SF3A1-209ENST00000496189 RTP1P59025 263 aa18.81■□□□□ 0.6
SF3A1-209ENST00000496189 TOB2Q14106 344 aaPredicted RBP18.81■□□□□ 0.6
SF3A1-209ENST00000496189 IL27Q8NEV9 243 aa18.81■□□□□ 0.6
SF3A1-209ENST00000496189 BACH2Q9BYV9 841 aa18.81■□□□□ 0.6
SF3A1-209ENST00000496189 POLR3EQ9NVU0 708 aa18.81■□□□□ 0.6
SF3A1-209ENST00000496189 ELP1O95163 1332 aa18.8■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms