RNA–Protein interactions for RNA: ENST00000494728.5

VTI1A-208, Transcript of vesicle transport through interaction with t-SNAREs 1A, human

TSL 2

Gene VTI1A, Length 463 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VTI1A-208	ENST00000494728	RASIP1	Q5U651	963 aa		13.61	□□□□□ -0.23
VTI1A-208	ENST00000494728	SLC17A8	Q8NDX2	589 aa		13.61	□□□□□ -0.23
VTI1A-208	ENST00000494728	TAAR1	Q96RJ0	339 aa		13.61	□□□□□ -0.23
VTI1A-208	ENST00000494728	UBAC1	Q9BSL1	405 aa		13.61	□□□□□ -0.23
VTI1A-208	ENST00000494728	KRT23	Q9C075	422 aa		13.61	□□□□□ -0.23
VTI1A-208	ENST00000494728	CNNM2	Q9H8M5	875 aa		13.61	□□□□□ -0.23
VTI1A-208	ENST00000494728	CTNNA3	Q9UI47	895 aa		13.61	□□□□□ -0.23
VTI1A-208	ENST00000494728	MAD2L2	Q9UI95	211 aa		13.61	□□□□□ -0.23
VTI1A-208	ENST00000494728		Q9Y3F1	56 aa		13.61	□□□□□ -0.23
VTI1A-208	ENST00000494728	LOC102724159	A0A0B4J2E5	919 aa		13.6	□□□□□ -0.23
VTI1A-208	ENST00000494728	GRXCR1	A8MXD5	290 aa		13.6	□□□□□ -0.23
VTI1A-208	ENST00000494728	SGSM2	O43147	1006 aa		13.6	□□□□□ -0.23
VTI1A-208	ENST00000494728	NT5C2	P49902	561 aa		13.6	□□□□□ -0.23
VTI1A-208	ENST00000494728	ANTXR2	P58335	489 aa		13.6	□□□□□ -0.23
VTI1A-208	ENST00000494728	PDE4D	Q08499	809 aa		13.6	□□□□□ -0.23
VTI1A-208	ENST00000494728	PPP2R5B	Q15173	497 aa		13.6	□□□□□ -0.23
VTI1A-208	ENST00000494728	PWP2	Q15269	919 aa	Known RBP	13.6	□□□□□ -0.23
VTI1A-208	ENST00000494728	CCDC178	Q5BJE1	867 aa		13.6	□□□□□ -0.23
VTI1A-208	ENST00000494728	CHST3	Q7LGC8	479 aa		13.6	□□□□□ -0.23
VTI1A-208	ENST00000494728	DNER	Q8NFT8	737 aa		13.6	□□□□□ -0.23
VTI1A-208	ENST00000494728	OR6J1	Q8NGC5	347 aa		13.6	□□□□□ -0.23
VTI1A-208	ENST00000494728	CDX2	Q99626	313 aa	Predicted RBP	13.6	□□□□□ -0.23
VTI1A-208	ENST00000494728	NOC4L	Q9BVI4	516 aa	Known RBP	13.6	□□□□□ -0.23
VTI1A-208	ENST00000494728	SEMA6B	Q9H3T3	888 aa		13.6	□□□□□ -0.23
VTI1A-208	ENST00000494728	VAT1L	Q9HCJ6	419 aa		13.6	□□□□□ -0.23
VTI1A-208	ENST00000494728	TRMT13	Q9NUP7	481 aa	Known RBP	13.6	□□□□□ -0.23
VTI1A-208	ENST00000494728	ABCB11	O95342	1321 aa		13.6	□□□□□ -0.23
VTI1A-208	ENST00000494728	BDP1	A6H8Y1	2624 aa		13.6	□□□□□ -0.23
VTI1A-208	ENST00000494728	DHX16	O60231	1041 aa	Known RBP	13.59	□□□□□ -0.23
VTI1A-208	ENST00000494728	CABYR	O75952	493 aa		13.59	□□□□□ -0.23
VTI1A-208	ENST00000494728	MYL3	P08590	195 aa		13.59	□□□□□ -0.23
VTI1A-208	ENST00000494728	DNAJB2	P25686	324 aa		13.59	□□□□□ -0.23
VTI1A-208	ENST00000494728	PBX2	P40425	430 aa		13.59	□□□□□ -0.23
VTI1A-208	ENST00000494728	CCDC62	Q6P9F0	684 aa		13.59	□□□□□ -0.23
VTI1A-208	ENST00000494728	FBXO11	Q86XK2	927 aa		13.59	□□□□□ -0.23
VTI1A-208	ENST00000494728	RGS22	Q8NE09	1264 aa		13.59	□□□□□ -0.23
VTI1A-208	ENST00000494728	SCFD2	Q8WU76	684 aa		13.59	□□□□□ -0.23
VTI1A-208	ENST00000494728	MYLIP	Q8WY64	445 aa		13.59	□□□□□ -0.23
VTI1A-208	ENST00000494728	MTMR8	Q96EF0	704 aa		13.59	□□□□□ -0.23
VTI1A-208	ENST00000494728	ALDH8A1	Q9H2A2	487 aa	Predicted RBP	13.59	□□□□□ -0.23
VTI1A-208	ENST00000494728	HIPK3	Q9H422	1215 aa		13.59	□□□□□ -0.23
VTI1A-208	ENST00000494728	GPHN	Q9NQX3	736 aa	Predicted RBP	13.59	□□□□□ -0.23
VTI1A-208	ENST00000494728	CXXC1	Q9P0U4	656 aa	Predicted RBP	13.59	□□□□□ -0.23
VTI1A-208	ENST00000494728	PALM3	A6NDB9	673 aa	Predicted RBP	13.58	□□□□□ -0.24
VTI1A-208	ENST00000494728	KLRF2	D3W0D1	207 aa		13.58	□□□□□ -0.24
VTI1A-208	ENST00000494728		E7EWF7	191 aa		13.58	□□□□□ -0.24
VTI1A-208	ENST00000494728	TLR3	O15455	904 aa	Known RBP	13.58	□□□□□ -0.24
VTI1A-208	ENST00000494728	CYTH3	O43739	400 aa		13.58	□□□□□ -0.24
VTI1A-208	ENST00000494728	CYP2C9	P11712	490 aa		13.58	□□□□□ -0.24
VTI1A-208	ENST00000494728	CCL23	P55773	120 aa		13.58	□□□□□ -0.24
VTI1A-208	ENST00000494728	PPIG	Q13427	754 aa	Known RBP eCLIP	13.58	□□□□□ -0.24	6e-13	■□□□□ 8.8
VTI1A-208	ENST00000494728	GRM4	Q14833	912 aa		13.58	□□□□□ -0.24
VTI1A-208	ENST00000494728	ZNF365	Q70YC5	407 aa		13.58	□□□□□ -0.24
VTI1A-208	ENST00000494728	MB21D2	Q8IYB1	491 aa	Predicted RBP	13.58	□□□□□ -0.24
VTI1A-208	ENST00000494728	SCLY	Q96I15	445 aa		13.58	□□□□□ -0.24
VTI1A-208	ENST00000494728	PNMA2	Q9UL42	364 aa		13.58	□□□□□ -0.24
VTI1A-208	ENST00000494728		A6NJR5	290 aa		13.57	□□□□□ -0.24
VTI1A-208	ENST00000494728	ZEB2	O60315	1214 aa		13.57	□□□□□ -0.24
VTI1A-208	ENST00000494728	TXN	P10599	105 aa	Known RBP	13.57	□□□□□ -0.24
VTI1A-208	ENST00000494728	EIF2AK2	P19525	551 aa	Known RBP	13.57	□□□□□ -0.24
VTI1A-208	ENST00000494728	CPT1A	P50416	773 aa		13.57	□□□□□ -0.24
VTI1A-208	ENST00000494728	HSD17B4	P51659	736 aa		13.57	□□□□□ -0.24
VTI1A-208	ENST00000494728	GHRHR	Q02643	423 aa		13.57	□□□□□ -0.24
VTI1A-208	ENST00000494728	ARHGAP1	Q07960	439 aa		13.57	□□□□□ -0.24
VTI1A-208	ENST00000494728	LY6K	Q17RY6	165 aa		13.57	□□□□□ -0.24
VTI1A-208	ENST00000494728	NBPF20	Q3BBV1	942 aa		13.57	□□□□□ -0.24
VTI1A-208	ENST00000494728	SEPT14	Q6ZU15	432 aa		13.57	□□□□□ -0.24
VTI1A-208	ENST00000494728	TMEM199	Q8N511	208 aa		13.57	□□□□□ -0.24
VTI1A-208	ENST00000494728	IL31RA	Q8NI17	732 aa		13.57	□□□□□ -0.24
VTI1A-208	ENST00000494728	PIGS	Q96S52	555 aa		13.57	□□□□□ -0.24
VTI1A-208	ENST00000494728	RMDN3	Q96TC7	470 aa		13.57	□□□□□ -0.24
VTI1A-208	ENST00000494728	PBX4	Q9BYU1	374 aa		13.57	□□□□□ -0.24
VTI1A-208	ENST00000494728	IL23A	Q9NPF7	189 aa		13.57	□□□□□ -0.24
VTI1A-208	ENST00000494728	POLR3E	Q9NVU0	708 aa		13.57	□□□□□ -0.24
VTI1A-208	ENST00000494728	RBM8A	Q9Y5S9	174 aa	Known RBP	13.57	□□□□□ -0.24
VTI1A-208	ENST00000494728	IFIT3	O14879	490 aa	Known RBP	13.56	□□□□□ -0.24
VTI1A-208	ENST00000494728	ZBTB5	O15062	677 aa		13.56	□□□□□ -0.24
VTI1A-208	ENST00000494728	CFB	P00751	764 aa		13.56	□□□□□ -0.24
VTI1A-208	ENST00000494728	HOXA13	P31271	388 aa	Predicted RBP	13.56	□□□□□ -0.24
VTI1A-208	ENST00000494728	TROAP	Q12815	778 aa		13.56	□□□□□ -0.24
VTI1A-208	ENST00000494728	GRIN2C	Q14957	1233 aa		13.56	□□□□□ -0.24
VTI1A-208	ENST00000494728	PSRC1	Q6PGN9	363 aa	Predicted RBP	13.56	□□□□□ -0.24
VTI1A-208	ENST00000494728	HOMER1	Q86YM7	354 aa		13.56	□□□□□ -0.24
VTI1A-208	ENST00000494728	AFG1L	Q8WV93	481 aa		13.56	□□□□□ -0.24
VTI1A-208	ENST00000494728	MTG1	Q9BT17	334 aa	Predicted RBP	13.56	□□□□□ -0.24
VTI1A-208	ENST00000494728	PXMP2	Q9NR77	195 aa		13.56	□□□□□ -0.24
VTI1A-208	ENST00000494728	MRPL11	Q9Y3B7	192 aa	Known RBP	13.56	□□□□□ -0.24
VTI1A-208	ENST00000494728		U3KPZ7	1027 aa	Predicted RBP	13.56	□□□□□ -0.24
VTI1A-208	ENST00000494728	NCOR1	O75376	2440 aa		13.56	□□□□□ -0.24
VTI1A-208	ENST00000494728	COL4A4	P53420	1690 aa	Predicted RBP	13.56	□□□□□ -0.24
VTI1A-208	ENST00000494728	HSFX4	A0A1B0GTS1	333 aa	Predicted RBP	13.55	□□□□□ -0.24
VTI1A-208	ENST00000494728	HSFX3	A0A1B0GWH4	333 aa	Predicted RBP	13.55	□□□□□ -0.24
VTI1A-208	ENST00000494728	NKRF	O15226	690 aa	Known RBP eCLIP	13.55	□□□□□ -0.24
VTI1A-208	ENST00000494728	RGS20	O76081	388 aa		13.55	□□□□□ -0.24
VTI1A-208	ENST00000494728	MMP3	P08254	477 aa		13.55	□□□□□ -0.24
VTI1A-208	ENST00000494728	TTLL4	Q14679	1199 aa		13.55	□□□□□ -0.24
VTI1A-208	ENST00000494728	FAM47C	Q5HY64	1035 aa		13.55	□□□□□ -0.24
VTI1A-208	ENST00000494728	OTOP2	Q7RTS6	562 aa		13.55	□□□□□ -0.24
VTI1A-208	ENST00000494728	NSUN6	Q8TEA1	469 aa	Known RBP	13.55	□□□□□ -0.24
VTI1A-208	ENST00000494728	RUFY2	Q8WXA3	655 aa		13.55	□□□□□ -0.24

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