RNA–Protein interactions for RNA: ENST00000488896.1

PTPN4-212, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 575 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-212ENST00000488896 MEFVO15553 781 aaPredicted RBP7.59□□□□□ -1.19
PTPN4-212ENST00000488896 PFKLP17858 780 aa7.59□□□□□ -1.19
PTPN4-212ENST00000488896 GRIA2P42262 883 aa7.59□□□□□ -1.19
PTPN4-212ENST00000488896 TCERG1LQ5VWI1 586 aa7.59□□□□□ -1.19
PTPN4-212ENST00000488896 WWC2Q6AWC2 1192 aa7.59□□□□□ -1.19
PTPN4-212ENST00000488896 SIAH1Q8IUQ4 282 aa7.59□□□□□ -1.19
PTPN4-212ENST00000488896 CCDC103Q8IW40 242 aa7.59□□□□□ -1.19
PTPN4-212ENST00000488896 DIO2Q92813 273 aa7.59□□□□□ -1.19
PTPN4-212ENST00000488896 TANGO6Q9C0B7 1094 aa7.59□□□□□ -1.19
PTPN4-212ENST00000488896 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP7.59□□□□□ -1.19
PTPN4-212ENST00000488896 NUDT5Q9UKK9 219 aa7.59□□□□□ -1.19
PTPN4-212ENST00000488896 A0A1W2PQU0 124 aa7.58□□□□□ -1.2
PTPN4-212ENST00000488896 C22orf46C9J442 243 aa7.58□□□□□ -1.2
PTPN4-212ENST00000488896 ARNTLO00327 626 aa7.58□□□□□ -1.2
PTPN4-212ENST00000488896 FPR2P25090 351 aa7.58□□□□□ -1.2
PTPN4-212ENST00000488896 MC3RP41968 323 aa7.58□□□□□ -1.2
PTPN4-212ENST00000488896 AFF3P51826 1226 aaKnown RBP7.58□□□□□ -1.2
PTPN4-212ENST00000488896 PPP2R2AP63151 447 aa7.58□□□□□ -1.2
PTPN4-212ENST00000488896 FAM129CQ86XR2 697 aa7.58□□□□□ -1.2
PTPN4-212ENST00000488896 PPIL6Q8IXY8 311 aa7.58□□□□□ -1.2
PTPN4-212ENST00000488896 TMEM145Q8NBT3 493 aa7.58□□□□□ -1.2
PTPN4-212ENST00000488896 PLEKHO2Q8TD55 490 aa7.58□□□□□ -1.2
PTPN4-212ENST00000488896 PEX11GQ96HA9 241 aa7.58□□□□□ -1.2
PTPN4-212ENST00000488896 PWWP2AQ96N64 755 aa7.58□□□□□ -1.2
PTPN4-212ENST00000488896 FAN1Q9Y2M0 1017 aa7.58□□□□□ -1.2
PTPN4-212ENST00000488896 ATF2P15336 505 aa7.57□□□□□ -1.2
PTPN4-212ENST00000488896 BMP7P18075 431 aa7.57□□□□□ -1.2
PTPN4-212ENST00000488896 BCL6P41182 706 aa7.57□□□□□ -1.2
PTPN4-212ENST00000488896 GFRA1P56159 465 aa7.57□□□□□ -1.2
PTPN4-212ENST00000488896 RPL11P62913 178 aaKnown RBP7.57□□□□□ -1.2
PTPN4-212ENST00000488896 RAB33AQ14088 237 aa7.57□□□□□ -1.2
PTPN4-212ENST00000488896 TARBP2Q15633 366 aaKnown RBP7.57□□□□□ -1.2
PTPN4-212ENST00000488896 IQCEQ6IPM2 695 aa7.57□□□□□ -1.2
PTPN4-212ENST00000488896 AMIGO3Q86WK7 504 aa7.57□□□□□ -1.2
PTPN4-212ENST00000488896 CKAP2LQ8IYA6 745 aa7.57□□□□□ -1.2
PTPN4-212ENST00000488896 NETO2Q8NC67 525 aa7.57□□□□□ -1.2
PTPN4-212ENST00000488896 KREMEN2Q8NCW0 462 aa7.57□□□□□ -1.2
PTPN4-212ENST00000488896 CHAMP1Q96JM3 812 aa7.57□□□□□ -1.2
PTPN4-212ENST00000488896 EPN3Q9H201 632 aa7.57□□□□□ -1.2
PTPN4-212ENST00000488896 TIMM13Q9Y5L4 95 aaPredicted RBP7.57□□□□□ -1.2
PTPN4-212ENST00000488896 IRS2Q9Y4H2 1338 aa7.56□□□□□ -1.2
PTPN4-212ENST00000488896 CCDC85CA6NKD9 419 aa7.56□□□□□ -1.2
PTPN4-212ENST00000488896 CPP00450 1065 aa7.56□□□□□ -1.2
PTPN4-212ENST00000488896 ASGR2P07307 311 aa7.56□□□□□ -1.2
PTPN4-212ENST00000488896 LCP1P13796 627 aa7.56□□□□□ -1.2
PTPN4-212ENST00000488896 ATP2B1P20020 1258 aa7.56□□□□□ -1.2
PTPN4-212ENST00000488896 PMLP29590 882 aa7.56□□□□□ -1.2
PTPN4-212ENST00000488896 E4F1Q66K89 784 aaPredicted RBP7.56□□□□□ -1.2
PTPN4-212ENST00000488896 CEP68Q76N32 757 aa7.56□□□□□ -1.2
PTPN4-212ENST00000488896 TMEM151BQ8IW70 566 aa7.56□□□□□ -1.2
PTPN4-212ENST00000488896 DACT3Q96B18 629 aaPredicted RBP7.56□□□□□ -1.2
PTPN4-212ENST00000488896 CCDC140Q96MF4 163 aa7.56□□□□□ -1.2
PTPN4-212ENST00000488896 IER2Q9BTL4 223 aa7.56□□□□□ -1.2
PTPN4-212ENST00000488896 PCDHA2Q9Y5H9 948 aa7.56□□□□□ -1.2
PTPN4-212ENST00000488896 U2SURPO15042 1029 aaKnown RBP7.55□□□□□ -1.2
PTPN4-212ENST00000488896 MYO1BO43795 1136 aa7.55□□□□□ -1.2
PTPN4-212ENST00000488896 SCG5P05408 212 aa7.55□□□□□ -1.2
PTPN4-212ENST00000488896 FBLN1P23142 703 aa7.55□□□□□ -1.2
PTPN4-212ENST00000488896 GTF2F1P35269 517 aaKnown RBP eCLIP7.55□□□□□ -1.2
PTPN4-212ENST00000488896 KCNAB2Q13303 367 aa7.55□□□□□ -1.2
PTPN4-212ENST00000488896 DENND5AQ6IQ26 1287 aa7.55□□□□□ -1.2
PTPN4-212ENST00000488896 RCBTB1Q8NDN9 531 aa7.55□□□□□ -1.2
PTPN4-212ENST00000488896 TRMT2BQ96GJ1 504 aaKnown RBP7.55□□□□□ -1.2
PTPN4-212ENST00000488896 FBXL7Q9UJT9 491 aa7.55□□□□□ -1.2
PTPN4-212ENST00000488896 NCAM1P13591 858 aa7.54□□□□□ -1.2
PTPN4-212ENST00000488896 IGFBP6P24592 240 aaPredicted RBP7.54□□□□□ -1.2
PTPN4-212ENST00000488896 LTBRP36941 435 aa7.54□□□□□ -1.2
PTPN4-212ENST00000488896 FOXO4P98177 505 aa7.54□□□□□ -1.2
PTPN4-212ENST00000488896 TSPAN17Q96FV3 270 aa7.54□□□□□ -1.2
PTPN4-212ENST00000488896 TMEM169Q96HH4 297 aa7.54□□□□□ -1.2
PTPN4-212ENST00000488896 INHBBP09529 407 aa7.53□□□□□ -1.2
PTPN4-212ENST00000488896 HSP90AA2PQ14568 343 aaPredicted RBP7.53□□□□□ -1.2
PTPN4-212ENST00000488896 ACBD5Q5T8D3 534 aaPredicted RBP7.53□□□□□ -1.2
PTPN4-212ENST00000488896 USP53Q70EK8 1073 aa7.53□□□□□ -1.2
PTPN4-212ENST00000488896 NLRP10Q86W26 655 aa7.53□□□□□ -1.2
PTPN4-212ENST00000488896 DCP2Q8IU60 420 aaKnown RBP7.53□□□□□ -1.2
PTPN4-212ENST00000488896 KCTD13Q8WZ19 329 aa7.53□□□□□ -1.2
PTPN4-212ENST00000488896 AP5M1Q9H0R1 490 aa7.53□□□□□ -1.2
PTPN4-212ENST00000488896 ZCCHC4Q9H5U6 513 aa7.53□□□□□ -1.2
PTPN4-212ENST00000488896 ARID1BQ8NFD5 2236 aaPredicted RBP7.52□□□□□ -1.2
PTPN4-212ENST00000488896 IQCA1LA6NCM1 817 aa7.52□□□□□ -1.21
PTPN4-212ENST00000488896 PRODHO43272 600 aa7.52□□□□□ -1.21
PTPN4-212ENST00000488896 ZBTB7AO95365 584 aa7.52□□□□□ -1.21
PTPN4-212ENST00000488896 SLC9A5Q14940 896 aa7.52□□□□□ -1.21
PTPN4-212ENST00000488896 C1orf159Q96HA4 380 aa7.52□□□□□ -1.21
PTPN4-212ENST00000488896 AARSD1Q9BTE6 412 aaKnown RBP7.52□□□□□ -1.21
PTPN4-212ENST00000488896 RNF38Q9H0F5 515 aa7.52□□□□□ -1.21
PTPN4-212ENST00000488896 CLDND1Q9NY35 253 aa7.52□□□□□ -1.21
PTPN4-212ENST00000488896 PMF1-BGLAPU3KQ54 211 aa7.52□□□□□ -1.21
PTPN4-212ENST00000488896 KRTAP4-8A0A0G2JLE6 195 aa7.51□□□□□ -1.21
PTPN4-212ENST00000488896 SGSM2O43147 1006 aa7.51□□□□□ -1.21
PTPN4-212ENST00000488896 DLX3O60479 287 aa7.51□□□□□ -1.21
PTPN4-212ENST00000488896 TRIM13O60858 407 aa7.51□□□□□ -1.21
PTPN4-212ENST00000488896 PLA2G1BP04054 148 aaKnown RBP7.51□□□□□ -1.21
PTPN4-212ENST00000488896 GTF2A2P52657 109 aa7.51□□□□□ -1.21
PTPN4-212ENST00000488896 SLC35F1Q5T1Q4 408 aa7.51□□□□□ -1.21
PTPN4-212ENST00000488896 ADGRG2Q8IZP9 1017 aa7.51□□□□□ -1.21
PTPN4-212ENST00000488896 NLGN1Q8N2Q7 840 aa7.51□□□□□ -1.21
PTPN4-212ENST00000488896 SMARCC2Q8TAQ2 1214 aa7.51□□□□□ -1.21
PTPN4-212ENST00000488896 ARHGEF4Q9NR80 690 aa7.51□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms