RNA–Protein interactions for RNA: ENST00000488848.1

USP11-209, Transcript of ubiquitin specific peptidase 11, humanhuman

TSL 2

Gene USP11, Length 904 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP11-209ENST00000488848 ARHGAP4P98171 946 aa12.17□□□□□ -0.46
USP11-209ENST00000488848 SREBF2Q12772 1141 aa12.17□□□□□ -0.46
USP11-209ENST00000488848 MUM1L1Q5H9M0 696 aa12.17□□□□□ -0.46
USP11-209ENST00000488848 JAKMIP3Q5VZ66 844 aa12.17□□□□□ -0.46
USP11-209ENST00000488848 ABRAQ8N0Z2 381 aa12.17□□□□□ -0.46
USP11-209ENST00000488848 FAM43AQ8N2R8 423 aa12.17□□□□□ -0.46
USP11-209ENST00000488848 KRI1Q8N9T8 703 aaKnown RBP12.17□□□□□ -0.46
USP11-209ENST00000488848 DNERQ8NFT8 737 aa12.17□□□□□ -0.46
USP11-209ENST00000488848 KCNMB3Q9NPA1 279 aa12.17□□□□□ -0.46
USP11-209ENST00000488848 TMEM260Q9NX78 707 aa12.17□□□□□ -0.46
USP11-209ENST00000488848 CYP39A1Q9NYL5 469 aa12.17□□□□□ -0.46
USP11-209ENST00000488848 PCDHA7Q9UN72 937 aa12.17□□□□□ -0.46
USP11-209ENST00000488848 HPSEQ9Y251 543 aa12.17□□□□□ -0.46
USP11-209ENST00000488848 CTDP1Q9Y5B0 961 aaPredicted RBP12.17□□□□□ -0.46
USP11-209ENST00000488848 IGLV3-22A0A075B6J6 115 aa12.16□□□□□ -0.46
USP11-209ENST00000488848 SLC26A4O43511 780 aa12.16□□□□□ -0.46
USP11-209ENST00000488848 STAM2O75886 525 aa12.16□□□□□ -0.46
USP11-209ENST00000488848 ALAS1P13196 640 aa12.16□□□□□ -0.46
USP11-209ENST00000488848 NCLP19338 710 aaKnown RBP12.16□□□□□ -0.46
USP11-209ENST00000488848 EDNRBP24530 442 aa12.16□□□□□ -0.46
USP11-209ENST00000488848 APLP1P51693 650 aa12.16□□□□□ -0.46
USP11-209ENST00000488848 ERVK-9P63128 1117 aa12.16□□□□□ -0.46
USP11-209ENST00000488848 ERVK-24P63145 666 aa12.16□□□□□ -0.46
USP11-209ENST00000488848 PTGDRQ13258 359 aa12.16□□□□□ -0.46
USP11-209ENST00000488848 RESP18Q5W5W9 173 aa12.16□□□□□ -0.46
USP11-209ENST00000488848 PCNX4Q63HM2 1172 aa12.16□□□□□ -0.46
USP11-209ENST00000488848 ELOA2Q8IYF1 753 aaPredicted RBP12.16□□□□□ -0.46
USP11-209ENST00000488848 ENGASEQ8NFI3 743 aa12.16□□□□□ -0.46
USP11-209ENST00000488848 GPT2Q8TD30 523 aa12.16□□□□□ -0.46
USP11-209ENST00000488848 AK8Q96MA6 479 aa12.16□□□□□ -0.46
USP11-209ENST00000488848 MOV10L1Q9BXT6 1211 aaKnown RBP12.16□□□□□ -0.46
USP11-209ENST00000488848 GDPD2Q9HCC8 539 aa12.16□□□□□ -0.46
USP11-209ENST00000488848 TXNRD2Q9NNW7 524 aa12.16□□□□□ -0.46
USP11-209ENST00000488848 A1CFQ9NQ94 594 aaKnown RBP12.16□□□□□ -0.46
USP11-209ENST00000488848 COL20A1Q9P218 1284 aa12.16□□□□□ -0.46
USP11-209ENST00000488848 DNAJC25-GNG10A0A024R161 153 aa12.15□□□□□ -0.46
USP11-209ENST00000488848 IGF2BP3O00425 579 aaKnown RBP eCLIP12.15□□□□□ -0.46
USP11-209ENST00000488848 NEMFO60524 1076 aa12.15□□□□□ -0.46
USP11-209ENST00000488848 GADD45BO75293 160 aaPredicted RBP12.15□□□□□ -0.46
USP11-209ENST00000488848 CFBP00751 764 aa12.15□□□□□ -0.46
USP11-209ENST00000488848 LONP1P36776 959 aaKnown RBP12.15□□□□□ -0.46
USP11-209ENST00000488848 FXR2P51116 673 aaKnown RBP eCLIP12.15□□□□□ -0.46
USP11-209ENST00000488848 CCNA1P78396 465 aa12.15□□□□□ -0.46
USP11-209ENST00000488848 SETQ01105 290 aaPredicted RBP12.15□□□□□ -0.46
USP11-209ENST00000488848 NOGQ13253 232 aa12.15□□□□□ -0.46
USP11-209ENST00000488848 NBR1Q14596 966 aa12.15□□□□□ -0.46
USP11-209ENST00000488848 FOXD4L6Q3SYB3 417 aaPredicted RBP12.15□□□□□ -0.46
USP11-209ENST00000488848 FOXD4L3Q6VB84 417 aaPredicted RBP12.15□□□□□ -0.46
USP11-209ENST00000488848 RNF207Q6ZRF8 634 aa12.15□□□□□ -0.46
USP11-209ENST00000488848 CPXCR1Q8N123 301 aa12.15□□□□□ -0.46
USP11-209ENST00000488848 IGSF22Q8N9C0 903 aa12.15□□□□□ -0.46
USP11-209ENST00000488848 FAM133AQ8N9E0 248 aa12.15□□□□□ -0.46
USP11-209ENST00000488848 ETNPPLQ8TBG4 499 aa12.15□□□□□ -0.46
USP11-209ENST00000488848 MORC4Q8TE76 937 aa12.15□□□□□ -0.46
USP11-209ENST00000488848 TBC1D5Q92609 795 aa12.15□□□□□ -0.46
USP11-209ENST00000488848 MEIS1O00470 390 aa12.14□□□□□ -0.47
USP11-209ENST00000488848 TRAK2O60296 914 aa12.14□□□□□ -0.47
USP11-209ENST00000488848 ALDH1A1P00352 501 aa12.14□□□□□ -0.47
USP11-209ENST00000488848 OR52Z1P0C646 297 aa12.14□□□□□ -0.47
USP11-209ENST00000488848 TAL1P17542 331 aaPredicted RBP12.14□□□□□ -0.47
USP11-209ENST00000488848 HOXA13P31271 388 aaPredicted RBP12.14□□□□□ -0.47
USP11-209ENST00000488848 ME1P48163 572 aa12.14□□□□□ -0.47
USP11-209ENST00000488848 FAM160A1Q05DH4 1040 aa12.14□□□□□ -0.47
USP11-209ENST00000488848 IRF5Q13568 498 aa12.14□□□□□ -0.47
USP11-209ENST00000488848 PDIA5Q14554 519 aa12.14□□□□□ -0.47
USP11-209ENST00000488848 LETM2Q2VYF4 491 aa12.14□□□□□ -0.47
USP11-209ENST00000488848 CEP55Q53EZ4 464 aa12.14□□□□□ -0.47
USP11-209ENST00000488848 SLC30A10Q6XR72 485 aa12.14□□□□□ -0.47
USP11-209ENST00000488848 IFNL1Q8IU54 200 aa12.14□□□□□ -0.47
USP11-209ENST00000488848 KCTD17Q8N5Z5 321 aa12.14□□□□□ -0.47
USP11-209ENST00000488848 GPRC5AQ8NFJ5 357 aa12.14□□□□□ -0.47
USP11-209ENST00000488848 MRPS27Q92552 414 aaKnown RBP12.14□□□□□ -0.47
USP11-209ENST00000488848 FAM20AQ96MK3 541 aa12.14□□□□□ -0.47
USP11-209ENST00000488848 IWS1Q96ST2 819 aa12.14□□□□□ -0.47
USP11-209ENST00000488848 PDCD2LQ9BRP1 358 aa12.14□□□□□ -0.47
USP11-209ENST00000488848 PXMP2Q9NR77 195 aa12.14□□□□□ -0.47
USP11-209ENST00000488848 DDX19AQ9NUU7 478 aaKnown RBP12.14□□□□□ -0.47
USP11-209ENST00000488848 PLXNB2O15031 1838 aa12.14□□□□□ -0.47
USP11-209ENST00000488848 FAM86B1E9PN63 330 aa12.13□□□□□ -0.47
USP11-209ENST00000488848 MAFGO15525 162 aa12.13□□□□□ -0.47
USP11-209ENST00000488848 STRNO43815 780 aa12.13□□□□□ -0.47
USP11-209ENST00000488848 SLC37A4O43826 429 aa12.13□□□□□ -0.47
USP11-209ENST00000488848 CCNT1O60563 726 aaKnown RBP12.13□□□□□ -0.47
USP11-209ENST00000488848 TDP2O95551 362 aa12.13□□□□□ -0.47
USP11-209ENST00000488848 FAM86B2P0C5J1 330 aa12.13□□□□□ -0.47
USP11-209ENST00000488848 CYP2C8P10632 490 aa12.13□□□□□ -0.47
USP11-209ENST00000488848 ERCC3P19447 782 aa12.13□□□□□ -0.47
USP11-209ENST00000488848 MCM7P33993 719 aa12.13□□□□□ -0.47
USP11-209ENST00000488848 SNW1Q13573 536 aaKnown RBP12.13□□□□□ -0.47
USP11-209ENST00000488848 BAATQ14032 418 aaPredicted RBP12.13□□□□□ -0.47
USP11-209ENST00000488848 ZNF174Q15697 407 aa12.13□□□□□ -0.47
USP11-209ENST00000488848 SHC4Q6S5L8 630 aa12.13□□□□□ -0.47
USP11-209ENST00000488848 C17orf99Q6UX52 265 aa12.13□□□□□ -0.47
USP11-209ENST00000488848 B3GNT9Q6UX72 402 aa12.13□□□□□ -0.47
USP11-209ENST00000488848 RBM43Q6ZSC3 357 aaKnown RBP12.13□□□□□ -0.47
USP11-209ENST00000488848 VSIG10LQ86VR7 867 aa12.13□□□□□ -0.47
USP11-209ENST00000488848 SLFN12Q8IYM2 578 aa12.13□□□□□ -0.47
USP11-209ENST00000488848 FMR1NBQ8N0W7 255 aaPredicted RBP12.13□□□□□ -0.47
USP11-209ENST00000488848 NSUN6Q8TEA1 469 aaKnown RBP12.13□□□□□ -0.47
USP11-209ENST00000488848 SMCR8Q8TEV9 937 aaPredicted RBP12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms