RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 RPAP3Q9H6T3 665 aaPredicted RBP13.73□□□□□ -0.21
HDAC6-230ENST00000488543 CSADQ9Y600 493 aa13.73□□□□□ -0.21
HDAC6-230ENST00000488543 BECN2A8MW95 431 aa13.73□□□□□ -0.21
HDAC6-230ENST00000488543 USP17L15C9J2P7 530 aa13.73□□□□□ -0.21
HDAC6-230ENST00000488543 USP17L13C9JLJ4 530 aa13.73□□□□□ -0.21
HDAC6-230ENST00000488543 USP17L11C9JVI0 530 aa13.73□□□□□ -0.21
HDAC6-230ENST00000488543 USP17L18D6R9N7 530 aa13.73□□□□□ -0.21
HDAC6-230ENST00000488543 USP17L22D6RA61 530 aa13.73□□□□□ -0.21
HDAC6-230ENST00000488543 USP17L17D6RBQ6 530 aa13.73□□□□□ -0.21
HDAC6-230ENST00000488543 USP17L19D6RCP7 530 aa13.73□□□□□ -0.21
HDAC6-230ENST00000488543 USP17L20D6RJB6 530 aa13.73□□□□□ -0.21
HDAC6-230ENST00000488543 BMP6P22004 513 aa13.73□□□□□ -0.21
HDAC6-230ENST00000488543 MRPL12P52815 198 aaKnown RBP13.73□□□□□ -0.21
HDAC6-230ENST00000488543 USP17L24Q0WX57 530 aa13.73□□□□□ -0.21
HDAC6-230ENST00000488543 PTPN21Q16825 1174 aa13.73□□□□□ -0.21
HDAC6-230ENST00000488543 USP17L6PQ6QN14 398 aa13.73□□□□□ -0.21
HDAC6-230ENST00000488543 DTHD1Q6ZMT9 781 aa13.73□□□□□ -0.21
HDAC6-230ENST00000488543 CHURC1Q8WUH1 139 aa13.73□□□□□ -0.21
HDAC6-230ENST00000488543 OTUD5Q96G74 571 aa13.73□□□□□ -0.21
HDAC6-230ENST00000488543 WNK4Q96J92 1243 aa13.73□□□□□ -0.21
HDAC6-230ENST00000488543 PSTPIP2Q9H939 334 aa13.73□□□□□ -0.21
HDAC6-230ENST00000488543 AS3MTQ9HBK9 375 aa13.73□□□□□ -0.21
HDAC6-230ENST00000488543 NOL12Q9UGY1 213 aaKnown RBP eCLIP13.73□□□□□ -0.21
HDAC6-230ENST00000488543 MAN1B1Q9UKM7 699 aa13.73□□□□□ -0.21
HDAC6-230ENST00000488543 V9GYY5 206 aaPredicted RBP13.73□□□□□ -0.21
HDAC6-230ENST00000488543 DOCK1Q14185 1865 aa13.73□□□□□ -0.21
HDAC6-230ENST00000488543 IRF6O14896 467 aa13.72□□□□□ -0.21
HDAC6-230ENST00000488543 NEMFO60524 1076 aa13.72□□□□□ -0.21
HDAC6-230ENST00000488543 OR52Z1P0C646 297 aa13.72□□□□□ -0.21
HDAC6-230ENST00000488543 KANK3Q6NY19 840 aa13.72□□□□□ -0.21
HDAC6-230ENST00000488543 PDXDC2PQ6P474 469 aa13.72□□□□□ -0.21
HDAC6-230ENST00000488543 FBXO11Q86XK2 927 aa13.72□□□□□ -0.21
HDAC6-230ENST00000488543 SPATA20Q8TB22 786 aa13.72□□□□□ -0.21
HDAC6-230ENST00000488543 LPAR1Q92633 364 aa13.72□□□□□ -0.21
HDAC6-230ENST00000488543 PAGE5Q96GU1 130 aa13.72□□□□□ -0.21
HDAC6-230ENST00000488543 HOOK1Q9UJC3 728 aaKnown RBP13.72□□□□□ -0.21
HDAC6-230ENST00000488543 FEM1BQ9UK73 627 aa13.72□□□□□ -0.21
HDAC6-230ENST00000488543 DCAF8L1A6NGE4 600 aa13.72□□□□□ -0.21
HDAC6-230ENST00000488543 PP2D1A8MPX8 630 aa13.72□□□□□ -0.21
HDAC6-230ENST00000488543 WDR46O15213 610 aaKnown RBP13.72□□□□□ -0.21
HDAC6-230ENST00000488543 FLOT1O75955 427 aa13.72□□□□□ -0.21
HDAC6-230ENST00000488543 AMNQ9BXJ7 453 aa13.72□□□□□ -0.21
HDAC6-230ENST00000488543 NAT10Q9H0A0 1025 aaKnown RBP13.72□□□□□ -0.21
HDAC6-230ENST00000488543 TDP2O95551 362 aa13.71□□□□□ -0.21
HDAC6-230ENST00000488543 CDC25AP30304 524 aa13.71□□□□□ -0.21
HDAC6-230ENST00000488543 USP14P54578 494 aa13.71□□□□□ -0.21
HDAC6-230ENST00000488543 ZRSR1Q15695 479 aaKnown RBP13.71□□□□□ -0.21
HDAC6-230ENST00000488543 POTEDQ86YR6 584 aa13.71□□□□□ -0.21
HDAC6-230ENST00000488543 ANKRD13AQ8IZ07 590 aa13.71□□□□□ -0.21
HDAC6-230ENST00000488543 TBC1D5Q92609 795 aa13.71□□□□□ -0.21
HDAC6-230ENST00000488543 AGBL1Q96MI9 1066 aa13.71□□□□□ -0.21
HDAC6-230ENST00000488543 MTMR9Q96QG7 549 aa13.71□□□□□ -0.21
HDAC6-230ENST00000488543 P2RX7Q99572 595 aaKnown RBP13.71□□□□□ -0.21
HDAC6-230ENST00000488543 MEIS2O14770 477 aa13.71□□□□□ -0.21
HDAC6-230ENST00000488543 OPLAHO14841 1288 aa13.71□□□□□ -0.21
HDAC6-230ENST00000488543 SLC37A4O43826 429 aa13.71□□□□□ -0.21
HDAC6-230ENST00000488543 NCAPHQ15003 741 aa13.71□□□□□ -0.21
HDAC6-230ENST00000488543 LRRC8AQ8IWT6 810 aa13.71□□□□□ -0.21
HDAC6-230ENST00000488543 CPXCR1Q8N123 301 aa13.71□□□□□ -0.21
HDAC6-230ENST00000488543 PDCL2Q8N4E4 241 aa13.71□□□□□ -0.21
HDAC6-230ENST00000488543 PRPF38AQ8NAV1 312 aaKnown RBP13.71□□□□□ -0.21
HDAC6-230ENST00000488543 GLT8D2Q9H1C3 349 aa13.71□□□□□ -0.21
HDAC6-230ENST00000488543 RANBP17Q9H2T7 1088 aaKnown RBP13.71□□□□□ -0.21
HDAC6-230ENST00000488543 PCNTO95613 3336 aa13.7□□□□□ -0.22
HDAC6-230ENST00000488543 NCBP1Q09161 790 aaKnown RBP13.7□□□□□ -0.22
HDAC6-230ENST00000488543 MORC3Q14149 939 aa13.7□□□□□ -0.22
HDAC6-230ENST00000488543 SARM1Q6SZW1 724 aa13.7□□□□□ -0.22
HDAC6-230ENST00000488543 FAM160B2Q86V87 743 aa13.7□□□□□ -0.22
HDAC6-230ENST00000488543 SMARCE1Q969G3 411 aa13.7□□□□□ -0.22
HDAC6-230ENST00000488543 MTRQ99707 1265 aa13.7□□□□□ -0.22
HDAC6-230ENST00000488543 SLF1Q9BQI6 1058 aa13.7□□□□□ -0.22
HDAC6-230ENST00000488543 CCSER1Q9C0I3 900 aa13.7□□□□□ -0.22
HDAC6-230ENST00000488543 PHIPQ8WWQ0 1821 aa13.7□□□□□ -0.22
HDAC6-230ENST00000488543 C19orf81C9J6K1 198 aa13.7□□□□□ -0.22
HDAC6-230ENST00000488543 PLA2G6O60733 806 aa13.7□□□□□ -0.22
HDAC6-230ENST00000488543 CASP1P29466 404 aa13.7□□□□□ -0.22
HDAC6-230ENST00000488543 HOXA13P31271 388 aaPredicted RBP13.7□□□□□ -0.22
HDAC6-230ENST00000488543 AFMP43652 599 aa13.7□□□□□ -0.22
HDAC6-230ENST00000488543 DPYDQ12882 1025 aa13.7□□□□□ -0.22
HDAC6-230ENST00000488543 KARSQ15046 597 aaKnown RBP13.7□□□□□ -0.22
HDAC6-230ENST00000488543 TREML2Q5T2D2 321 aa13.7□□□□□ -0.22
HDAC6-230ENST00000488543 ARHGAP30Q7Z6I6 1101 aaPredicted RBP13.7□□□□□ -0.22
HDAC6-230ENST00000488543 IQUBQ8NA54 791 aa13.7□□□□□ -0.22
HDAC6-230ENST00000488543 ZNF536O15090 1300 aa13.7□□□□□ -0.22
HDAC6-230ENST00000488543 PEX10O60683 326 aa13.69□□□□□ -0.22
HDAC6-230ENST00000488543 SKILP12757 684 aa13.69□□□□□ -0.22
HDAC6-230ENST00000488543 NAALADL2Q58DX5 795 aa13.69□□□□□ -0.22
HDAC6-230ENST00000488543 PPP4R3AQ6IN85 833 aa13.69□□□□□ -0.22
HDAC6-230ENST00000488543 ARMC9Q7Z3E5 817 aa13.69□□□□□ -0.22
HDAC6-230ENST00000488543 MTERF4Q7Z6M4 381 aaKnown RBP13.69□□□□□ -0.22
HDAC6-230ENST00000488543 LRRC15Q8TF66 581 aa13.69□□□□□ -0.22
HDAC6-230ENST00000488543 ATG4CQ96DT6 458 aa13.69□□□□□ -0.22
HDAC6-230ENST00000488543 PYM1Q9BRP8 204 aaKnown RBP13.69□□□□□ -0.22
HDAC6-230ENST00000488543 RAVER2Q9HCJ3 691 aaKnown RBP13.69□□□□□ -0.22
HDAC6-230ENST00000488543 OTOFQ9HC10 1997 aa13.69□□□□□ -0.22
HDAC6-230ENST00000488543 LDHDQ86WU2 507 aa13.69□□□□□ -0.22
HDAC6-230ENST00000488543 OPTNQ96CV9 577 aa13.69□□□□□ -0.22
HDAC6-230ENST00000488543 ANO3Q9BYT9 981 aa13.69□□□□□ -0.22
HDAC6-230ENST00000488543 DISC1Q9NRI5 854 aa13.69□□□□□ -0.22
HDAC6-230ENST00000488543 TMOD4Q9NZQ9 345 aa13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms