RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 PTPDC1A2A3K4 754 aa11.85□□□□□ -0.51
SKA1-204ENST00000488454 PPP1R11O60927 126 aaPredicted RBP11.85□□□□□ -0.51
SKA1-204ENST00000488454 CTDNEP1O95476 244 aa11.85□□□□□ -0.51
SKA1-204ENST00000488454 GNRH1P01148 92 aa11.85□□□□□ -0.51
SKA1-204ENST00000488454 HSPA8P11142 646 aaKnown RBP11.85□□□□□ -0.51
SKA1-204ENST00000488454 LBX1P52954 281 aa11.85□□□□□ -0.51
SKA1-204ENST00000488454 NAPAP54920 295 aa11.85□□□□□ -0.51
SKA1-204ENST00000488454 TRIM29Q14134 588 aa11.85□□□□□ -0.51
SKA1-204ENST00000488454 GPR142Q7Z601 462 aa11.85□□□□□ -0.51
SKA1-204ENST00000488454 ABRAQ8N0Z2 381 aa11.85□□□□□ -0.51
SKA1-204ENST00000488454 RGS22Q8NE09 1264 aa11.85□□□□□ -0.51
SKA1-204ENST00000488454 CUL5Q93034 780 aa11.85□□□□□ -0.51
SKA1-204ENST00000488454 BARHL2Q9NY43 387 aa11.85□□□□□ -0.51
SKA1-204ENST00000488454 SLC5A4Q9NY91 659 aa11.85□□□□□ -0.51
SKA1-204ENST00000488454 SMC3Q9UQE7 1217 aa11.85□□□□□ -0.51
SKA1-204ENST00000488454 STK36Q9NRP7 1315 aa11.85□□□□□ -0.51
SKA1-204ENST00000488454 SLC15A5A6NIM6 579 aa11.84□□□□□ -0.51
SKA1-204ENST00000488454 JAK2O60674 1132 aa11.84□□□□□ -0.51
SKA1-204ENST00000488454 ANP32AP39687 249 aaKnown RBP11.84□□□□□ -0.51
SKA1-204ENST00000488454 MRPL12P52815 198 aaKnown RBP11.84□□□□□ -0.51
SKA1-204ENST00000488454 CUL4AQ13619 759 aa11.84□□□□□ -0.51
SKA1-204ENST00000488454 MUM1L1Q5H9M0 696 aa11.84□□□□□ -0.51
SKA1-204ENST00000488454 WWC2Q6AWC2 1192 aa11.84□□□□□ -0.51
SKA1-204ENST00000488454 NSMFQ6X4W1 530 aa11.84□□□□□ -0.51
SKA1-204ENST00000488454 RNF207Q6ZRF8 634 aa11.84□□□□□ -0.51
SKA1-204ENST00000488454 DPP9Q86TI2 863 aa11.84□□□□□ -0.51
SKA1-204ENST00000488454 SAMD3Q8N6K7 520 aa11.84□□□□□ -0.51
SKA1-204ENST00000488454 CCDC148Q8NFR7 591 aa11.84□□□□□ -0.51
SKA1-204ENST00000488454 SOCS4Q8WXH5 440 aa11.84□□□□□ -0.51
SKA1-204ENST00000488454 GPKOWQ92917 476 aaPredicted RBP eCLIP11.84□□□□□ -0.518e-6■■■□□ 18.6
SKA1-204ENST00000488454 RNF166Q96A37 237 aaPredicted RBP11.84□□□□□ -0.51
SKA1-204ENST00000488454 NUDT12Q9BQG2 462 aa11.84□□□□□ -0.51
SKA1-204ENST00000488454 ALG1Q9BT22 464 aa11.84□□□□□ -0.51
SKA1-204ENST00000488454 MAF1Q9H063 256 aa11.84□□□□□ -0.51
SKA1-204ENST00000488454 GLT8D2Q9H1C3 349 aa11.84□□□□□ -0.51
SKA1-204ENST00000488454 PSTPIP2Q9H939 334 aa11.84□□□□□ -0.51
SKA1-204ENST00000488454 CDHR5Q9HBB8 845 aa11.84□□□□□ -0.51
SKA1-204ENST00000488454 PFASO15067 1338 aa11.84□□□□□ -0.51
SKA1-204ENST00000488454 SMCO2A6NFE2 343 aa11.83□□□□□ -0.52
SKA1-204ENST00000488454 GCOM1H8Y6P7 765 aaPredicted RBP11.83□□□□□ -0.52
SKA1-204ENST00000488454 STXBP3O00186 592 aa11.83□□□□□ -0.52
SKA1-204ENST00000488454 CFBP00751 764 aa11.83□□□□□ -0.52
SKA1-204ENST00000488454 POLR2MP0CAP2 368 aa11.83□□□□□ -0.52
SKA1-204ENST00000488454 TAL1P17542 331 aaPredicted RBP11.83□□□□□ -0.52
SKA1-204ENST00000488454 GNA11P29992 359 aa11.83□□□□□ -0.52
SKA1-204ENST00000488454 PRMT2P55345 433 aa11.83□□□□□ -0.52
SKA1-204ENST00000488454 NLRP5P59047 1200 aa11.83□□□□□ -0.52
SKA1-204ENST00000488454 ST3GAL1Q11201 340 aa11.83□□□□□ -0.52
SKA1-204ENST00000488454 BAATQ14032 418 aaPredicted RBP11.83□□□□□ -0.52
SKA1-204ENST00000488454 PKN1Q16512 942 aa11.83□□□□□ -0.52
SKA1-204ENST00000488454 PPP1R18Q6NYC8 613 aa11.83□□□□□ -0.52
SKA1-204ENST00000488454 CLEC4DQ8WXI8 215 aa11.83□□□□□ -0.52
SKA1-204ENST00000488454 INTS4Q96HW7 963 aaKnown RBP11.83□□□□□ -0.52
SKA1-204ENST00000488454 TRIM47Q96LD4 638 aa11.83□□□□□ -0.52
SKA1-204ENST00000488454 ARHGAP39Q9C0H5 1083 aa11.83□□□□□ -0.52
SKA1-204ENST00000488454 C6orf50Q9HD87 102 aa11.83□□□□□ -0.52
SKA1-204ENST00000488454 SH3GLB2Q9NR46 395 aa11.83□□□□□ -0.52
SKA1-204ENST00000488454 MAP3K20Q9NYL2 800 aaKnown RBP11.83□□□□□ -0.52
SKA1-204ENST00000488454 DAXXQ9UER7 740 aaPredicted RBP11.83□□□□□ -0.52
SKA1-204ENST00000488454 BHMG1C9JSJ3 638 aaPredicted RBP11.82□□□□□ -0.52
SKA1-204ENST00000488454 NFIBO00712 420 aa11.82□□□□□ -0.52
SKA1-204ENST00000488454 DTNBO60941 627 aa11.82□□□□□ -0.52
SKA1-204ENST00000488454 CALML3P27482 149 aa11.82□□□□□ -0.52
SKA1-204ENST00000488454 ADORA2AP29274 412 aa11.82□□□□□ -0.52
SKA1-204ENST00000488454 RGS2P41220 211 aa11.82□□□□□ -0.52
SKA1-204ENST00000488454 ADCY7P51828 1080 aa11.82□□□□□ -0.52
SKA1-204ENST00000488454 GRB14Q14449 540 aa11.82□□□□□ -0.52
SKA1-204ENST00000488454 FAM177A1Q8N128 213 aaPredicted RBP11.82□□□□□ -0.52
SKA1-204ENST00000488454 SMARCC2Q8TAQ2 1214 aa11.82□□□□□ -0.52
SKA1-204ENST00000488454 BICD2Q8TD16 824 aa11.82□□□□□ -0.52
SKA1-204ENST00000488454 A1CFQ9NQ94 594 aaKnown RBP11.82□□□□□ -0.52
SKA1-204ENST00000488454 CYP39A1Q9NYL5 469 aa11.82□□□□□ -0.52
SKA1-204ENST00000488454 VPS54Q9P1Q0 977 aa11.82□□□□□ -0.52
SKA1-204ENST00000488454 TRIM17Q9Y577 477 aa11.82□□□□□ -0.52
SKA1-204ENST00000488454 B4DLN1 442 aa11.81□□□□□ -0.52
SKA1-204ENST00000488454 FDPSP14324 419 aaKnown RBP11.81□□□□□ -0.52
SKA1-204ENST00000488454 CYP2B6P20813 491 aa11.81□□□□□ -0.52
SKA1-204ENST00000488454 GJB2P29033 226 aa11.81□□□□□ -0.52
SKA1-204ENST00000488454 CTGFP29279 349 aa11.81□□□□□ -0.52
SKA1-204ENST00000488454 RPS6P62753 249 aaKnown RBP11.81□□□□□ -0.52
SKA1-204ENST00000488454 MAP2K5Q13163 448 aa11.81□□□□□ -0.52
SKA1-204ENST00000488454 SAFBQ15424 915 aaKnown RBP eCLIP11.81□□□□□ -0.52
SKA1-204ENST00000488454 MORN1Q5T089 497 aa11.81□□□□□ -0.52
SKA1-204ENST00000488454 GALNT17Q6IS24 598 aa11.81□□□□□ -0.52
SKA1-204ENST00000488454 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.81□□□□□ -0.52
SKA1-204ENST00000488454 TEX2Q8IWB9 1127 aa11.81□□□□□ -0.52
SKA1-204ENST00000488454 RAET1EQ8TD07 263 aa11.81□□□□□ -0.52
SKA1-204ENST00000488454 C8orf76Q96K31 380 aa11.81□□□□□ -0.52
SKA1-204ENST00000488454 MPHOSPH6Q99547 160 aaKnown RBP11.81□□□□□ -0.52
SKA1-204ENST00000488454 BRMS1Q9HCU9 246 aa11.81□□□□□ -0.52
SKA1-204ENST00000488454 RIC8AQ9NPQ8 531 aa11.81□□□□□ -0.52
SKA1-204ENST00000488454 SRRDQ9UH36 339 aa11.81□□□□□ -0.52
SKA1-204ENST00000488454 GJD2Q9UKL4 321 aa11.81□□□□□ -0.52
SKA1-204ENST00000488454 RLFQ13129 1914 aa11.81□□□□□ -0.52
SKA1-204ENST00000488454 PCNTO95613 3336 aa11.8□□□□□ -0.52
SKA1-204ENST00000488454 ESYT2A0FGR8 921 aa11.8□□□□□ -0.52
SKA1-204ENST00000488454 SPDYE3A6NKU9 549 aa11.8□□□□□ -0.52
SKA1-204ENST00000488454 PGK2P07205 417 aa11.8□□□□□ -0.52
SKA1-204ENST00000488454 FLT3LGP49771 235 aa11.8□□□□□ -0.52
SKA1-204ENST00000488454 PRKCZQ05513 592 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms