RNA–Protein interactions for RNA: ENST00000487188.1

VPS13D-209, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 3,990 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-209ENST00000487188 TRAPPC3O43617 180 aa6.87□□□□□ -1.31
VPS13D-209ENST00000487188 CEP104O60308 925 aa6.87□□□□□ -1.31
VPS13D-209ENST00000487188 PRDM1O75626 825 aa6.87□□□□□ -1.31
VPS13D-209ENST00000487188 GHRP10912 638 aa6.87□□□□□ -1.31
VPS13D-209ENST00000487188 ASIC1P78348 528 aa6.87□□□□□ -1.31
VPS13D-209ENST00000487188 EHHADHQ08426 723 aa6.87□□□□□ -1.31
VPS13D-209ENST00000487188 GRIK3Q13003 919 aa6.87□□□□□ -1.31
VPS13D-209ENST00000487188 PSMD2Q13200 908 aa6.87□□□□□ -1.31
VPS13D-209ENST00000487188 RABL6Q3YEC7 729 aaPredicted RBP6.87□□□□□ -1.31
VPS13D-209ENST00000487188 PI16Q6UXB8 463 aa6.87□□□□□ -1.31
VPS13D-209ENST00000487188 CD302Q8IX05 232 aa6.87□□□□□ -1.31
VPS13D-209ENST00000487188 RPUSD2Q8IZ73 545 aaKnown RBP6.87□□□□□ -1.31
VPS13D-209ENST00000487188 RAPGEF4Q8WZA2 1011 aa6.87□□□□□ -1.31
VPS13D-209ENST00000487188 OSBPL1AQ9BXW6 950 aa6.87□□□□□ -1.31
VPS13D-209ENST00000487188 HOMER3Q9NSC5 361 aa6.87□□□□□ -1.31
VPS13D-209ENST00000487188 LRRC10BA6NIK2 292 aa6.86□□□□□ -1.31
VPS13D-209ENST00000487188 UBAP1LF5GYI3 381 aa6.86□□□□□ -1.31
VPS13D-209ENST00000487188 PLEKP08567 350 aaPredicted RBP6.86□□□□□ -1.31
VPS13D-209ENST00000487188 CSB-PGBD3P0DP91 1061 aa6.86□□□□□ -1.31
VPS13D-209ENST00000487188 SRGNP10124 158 aa6.86□□□□□ -1.31
VPS13D-209ENST00000487188 PRLRP16471 622 aa6.86□□□□□ -1.31
VPS13D-209ENST00000487188 NTRK3Q16288 839 aa6.86□□□□□ -1.31
VPS13D-209ENST00000487188 CDC37Q16543 378 aaPredicted RBP6.86□□□□□ -1.31
VPS13D-209ENST00000487188 ZNF790Q6PG37 636 aa6.86□□□□□ -1.31
VPS13D-209ENST00000487188 KCNV2Q8TDN2 545 aa6.86□□□□□ -1.31
VPS13D-209ENST00000487188 PSMD1Q99460 953 aa6.86□□□□□ -1.31
VPS13D-209ENST00000487188 PAIP2Q9BPZ3 127 aaKnown RBP6.86□□□□□ -1.31
VPS13D-209ENST00000487188 PUS3Q9BZE2 481 aaKnown RBP6.86□□□□□ -1.31
VPS13D-209ENST00000487188 KDM4CQ9H3R0 1056 aa6.86□□□□□ -1.31
VPS13D-209ENST00000487188 IQSEC3Q9UPP2 1182 aaPredicted RBP6.86□□□□□ -1.31
VPS13D-209ENST00000487188 KCNK3O14649 394 aa6.86□□□□□ -1.31
VPS13D-209ENST00000487188 HGSO14964 777 aaPredicted RBP6.86□□□□□ -1.31
VPS13D-209ENST00000487188 EVI5O60447 810 aa6.86□□□□□ -1.31
VPS13D-209ENST00000487188 SNRPA1P09661 255 aaKnown RBP6.86□□□□□ -1.31
VPS13D-209ENST00000487188 HSD17B3P37058 310 aa6.86□□□□□ -1.31
VPS13D-209ENST00000487188 EPS15P42566 896 aa6.86□□□□□ -1.31
VPS13D-209ENST00000487188 LIFRP42702 1097 aa6.86□□□□□ -1.31
VPS13D-209ENST00000487188 ARID5AQ03989 594 aa6.86□□□□□ -1.31
VPS13D-209ENST00000487188 PDCD2Q16342 344 aaPredicted RBP6.86□□□□□ -1.31
VPS13D-209ENST00000487188 C11orf91Q3C1V1 193 aa6.86□□□□□ -1.31
VPS13D-209ENST00000487188 C6orf89Q6UWU4 347 aa6.86□□□□□ -1.31
VPS13D-209ENST00000487188 ZNF662Q6ZS27 426 aa6.86□□□□□ -1.31
VPS13D-209ENST00000487188 PIK3AP1Q6ZUJ8 805 aa6.86□□□□□ -1.31
VPS13D-209ENST00000487188 ZNF654Q8IZM8 581 aa6.86□□□□□ -1.31
VPS13D-209ENST00000487188 TMTC2Q8N394 836 aa6.86□□□□□ -1.31
VPS13D-209ENST00000487188 MAB21L3Q8N8X9 362 aa6.86□□□□□ -1.31
VPS13D-209ENST00000487188 CCDC26Q8TAB7 109 aa6.86□□□□□ -1.31
VPS13D-209ENST00000487188 KLHL29Q96CT2 875 aa6.86□□□□□ -1.31
VPS13D-209ENST00000487188 IQCDQ96DY2 449 aa6.86□□□□□ -1.31
VPS13D-209ENST00000487188 ELAC2Q9BQ52 826 aaKnown RBP6.86□□□□□ -1.31
VPS13D-209ENST00000487188 TRIM31Q9BZY9 425 aa6.86□□□□□ -1.31
VPS13D-209ENST00000487188 SLC39A2Q9NP94 309 aa6.86□□□□□ -1.31
VPS13D-209ENST00000487188 PLCB1Q9NQ66 1216 aa6.86□□□□□ -1.31
VPS13D-209ENST00000487188 CD2APQ9Y5K6 639 aa6.86□□□□□ -1.31
VPS13D-209ENST00000487188 A0A0G2JS52 829 aa6.86□□□□□ -1.31
VPS13D-209ENST00000487188 HIP1RO75146 1068 aa6.86□□□□□ -1.31
VPS13D-209ENST00000487188 RTN2O75298 545 aa6.86□□□□□ -1.31
VPS13D-209ENST00000487188 MMEP08473 750 aa6.86□□□□□ -1.31
VPS13D-209ENST00000487188 IFNAR2P48551 515 aa6.86□□□□□ -1.31
VPS13D-209ENST00000487188 PDE4DQ08499 809 aa6.86□□□□□ -1.31
VPS13D-209ENST00000487188 CUL1Q13616 776 aa6.86□□□□□ -1.31
VPS13D-209ENST00000487188 RPS6KA1Q15418 735 aa6.86□□□□□ -1.31
VPS13D-209ENST00000487188 MEA1Q16626 185 aa6.86□□□□□ -1.31
VPS13D-209ENST00000487188 TMED8Q6PL24 325 aaPredicted RBP6.86□□□□□ -1.31
VPS13D-209ENST00000487188 ATG9AQ7Z3C6 839 aa6.86□□□□□ -1.31
VPS13D-209ENST00000487188 SH3RF1Q7Z6J0 888 aa6.86□□□□□ -1.31
VPS13D-209ENST00000487188 SGMS1Q86VZ5 419 aa6.86□□□□□ -1.31
VPS13D-209ENST00000487188 FAM228AQ86W67 206 aa6.86□□□□□ -1.31
VPS13D-209ENST00000487188 CRACR2BQ8N4Y2 399 aaPredicted RBP6.86□□□□□ -1.31
VPS13D-209ENST00000487188 MREGQ8N565 214 aa6.86□□□□□ -1.31
VPS13D-209ENST00000487188 GDF3Q9NR23 364 aa6.86□□□□□ -1.31
VPS13D-209ENST00000487188 CNNM1Q9NRU3 951 aa6.86□□□□□ -1.31
VPS13D-209ENST00000487188 FBXL5Q9UKA1 691 aa6.86□□□□□ -1.31
VPS13D-209ENST00000487188 DCCP43146 1447 aa6.86□□□□□ -1.31
VPS13D-209ENST00000487188 RTL9Q8NET4 1388 aa6.86□□□□□ -1.31
VPS13D-209ENST00000487188 COL16A1Q07092 1604 aaPredicted RBP6.86□□□□□ -1.31
VPS13D-209ENST00000487188 ZNF532Q9HCE3 1301 aa6.86□□□□□ -1.31
VPS13D-209ENST00000487188 MINDY4BA8MYZ0 360 aa6.85□□□□□ -1.31
VPS13D-209ENST00000487188 RAD51CO43502 376 aa6.85□□□□□ -1.31
VPS13D-209ENST00000487188 MGRN1O60291 552 aa6.85□□□□□ -1.31
VPS13D-209ENST00000487188 GBP1P32455 592 aa6.85□□□□□ -1.31
VPS13D-209ENST00000487188 SEMA3FQ13275 785 aa6.85□□□□□ -1.31
VPS13D-209ENST00000487188 IFI16Q16666 785 aaKnown RBP6.85□□□□□ -1.31
VPS13D-209ENST00000487188 GRIPAP1Q4V328 841 aa6.85□□□□□ -1.31
VPS13D-209ENST00000487188 AGBL2Q5U5Z8 902 aa6.85□□□□□ -1.31
VPS13D-209ENST00000487188 TLDC1Q6P9B6 456 aa6.85□□□□□ -1.31
VPS13D-209ENST00000487188 CATIPQ7Z7H3 387 aa6.85□□□□□ -1.31
VPS13D-209ENST00000487188 FANCBQ8NB91 859 aa6.85□□□□□ -1.31
VPS13D-209ENST00000487188 PPIL4Q8WUA2 492 aaKnown RBP eCLIP6.85□□□□□ -1.31
VPS13D-209ENST00000487188 TATDN2Q93075 761 aa6.85□□□□□ -1.31
VPS13D-209ENST00000487188 XPO6Q96QU8 1125 aaKnown RBP6.85□□□□□ -1.31
VPS13D-209ENST00000487188 TRIM4Q9C037 500 aa6.85□□□□□ -1.31
VPS13D-209ENST00000487188 DPH5Q9H2P9 285 aa6.85□□□□□ -1.31
VPS13D-209ENST00000487188 RNF41Q9H4P4 317 aaPredicted RBP6.85□□□□□ -1.31
VPS13D-209ENST00000487188 ZBTB3Q9H5J0 574 aa6.85□□□□□ -1.31
VPS13D-209ENST00000487188 ZSWIM5Q9P217 1185 aa6.85□□□□□ -1.31
VPS13D-209ENST00000487188 V9GY48 417 aaPredicted RBP6.85□□□□□ -1.31
VPS13D-209ENST00000487188 NHSL1Q5SYE7 1610 aa6.85□□□□□ -1.31
VPS13D-209ENST00000487188 PALMO75781 387 aa6.85□□□□□ -1.31
VPS13D-209ENST00000487188 MBD4O95243 580 aa6.85□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms