RNA–Protein interactions for RNA: ENST00000487043.5

PTCD3-216, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 1,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-216ENST00000487043 C2orf71A6NGG8 1288 aa5.42□□□□□ -1.54
PTCD3-216ENST00000487043 AQP7O14520 342 aa5.42□□□□□ -1.54
PTCD3-216ENST00000487043 KATNA1O75449 491 aa5.42□□□□□ -1.54
PTCD3-216ENST00000487043 EYA4O95677 639 aa5.42□□□□□ -1.54
PTCD3-216ENST00000487043 THBDP07204 575 aa5.42□□□□□ -1.54
PTCD3-216ENST00000487043 POU3F2P20265 443 aaPredicted RBP5.42□□□□□ -1.54
PTCD3-216ENST00000487043 GUCY1A3Q02108 690 aa5.42□□□□□ -1.54
PTCD3-216ENST00000487043 TNK2Q07912 1038 aa5.42□□□□□ -1.54
PTCD3-216ENST00000487043 CCDC181Q5TID7 509 aa5.42□□□□□ -1.54
PTCD3-216ENST00000487043 PIK3R6Q5UE93 754 aa5.42□□□□□ -1.54
PTCD3-216ENST00000487043 CDCA2Q69YH5 1023 aaPredicted RBP5.42□□□□□ -1.54
PTCD3-216ENST00000487043 STYK1Q6J9G0 422 aa5.42□□□□□ -1.54
PTCD3-216ENST00000487043 LHFPL2Q6ZUX7 228 aa5.42□□□□□ -1.54
PTCD3-216ENST00000487043 FAM214BQ7L5A3 538 aa5.42□□□□□ -1.54
PTCD3-216ENST00000487043 MTDHQ86UE4 582 aaKnown RBP5.42□□□□□ -1.54
PTCD3-216ENST00000487043 KSR1Q8IVT5 923 aa5.42□□□□□ -1.54
PTCD3-216ENST00000487043 PPIL6Q8IXY8 311 aa5.42□□□□□ -1.54
PTCD3-216ENST00000487043 RAVER1Q8IY67 606 aaKnown RBP5.42□□□□□ -1.54
PTCD3-216ENST00000487043 FAM181AQ8N9Y4 354 aa5.42□□□□□ -1.54
PTCD3-216ENST00000487043 KREMEN2Q8NCW0 462 aa5.42□□□□□ -1.54
PTCD3-216ENST00000487043 WDR66Q8TBY9 1149 aa5.42□□□□□ -1.54
PTCD3-216ENST00000487043 GTF2IRD1Q9UHL9 959 aa5.42□□□□□ -1.54
PTCD3-216ENST00000487043 TCEAL9Q9UHQ7 104 aa5.42□□□□□ -1.54
PTCD3-216ENST00000487043 PCDHA8Q9Y5H6 950 aa5.42□□□□□ -1.54
PTCD3-216ENST00000487043 BACE2Q9Y5Z0 518 aa5.42□□□□□ -1.54
PTCD3-216ENST00000487043 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP5.42□□□□□ -1.54
PTCD3-216ENST00000487043 RAD54L2Q9Y4B4 1467 aa5.42□□□□□ -1.54
PTCD3-216ENST00000487043 CARMIL2Q6F5E8 1435 aa5.41□□□□□ -1.54
PTCD3-216ENST00000487043 DBX1A6NMT0 343 aa5.41□□□□□ -1.54
PTCD3-216ENST00000487043 AURKAO14965 403 aa5.41□□□□□ -1.54
PTCD3-216ENST00000487043 MEFVO15553 781 aaPredicted RBP5.41□□□□□ -1.54
PTCD3-216ENST00000487043 ALDH1L1O75891 902 aa5.41□□□□□ -1.54
PTCD3-216ENST00000487043 NPTXRO95502 500 aa5.41□□□□□ -1.54
PTCD3-216ENST00000487043 CD8BP10966 210 aa5.41□□□□□ -1.54
PTCD3-216ENST00000487043 IFNGR1P15260 489 aa5.41□□□□□ -1.54
PTCD3-216ENST00000487043 FUT4P22083 530 aa5.41□□□□□ -1.54
PTCD3-216ENST00000487043 NOP2P46087 812 aaKnown RBP5.41□□□□□ -1.54
PTCD3-216ENST00000487043 DHCR24Q15392 516 aa5.41□□□□□ -1.54
PTCD3-216ENST00000487043 ATG4DQ86TL0 474 aaPredicted RBP5.41□□□□□ -1.54
PTCD3-216ENST00000487043 WFDC3Q8IUB2 231 aa5.41□□□□□ -1.54
PTCD3-216ENST00000487043 PI4K2BQ8TCG2 481 aa5.41□□□□□ -1.54
PTCD3-216ENST00000487043 FRS2Q8WU20 508 aa5.41□□□□□ -1.54
PTCD3-216ENST00000487043 COPS5Q92905 334 aa5.41□□□□□ -1.54
PTCD3-216ENST00000487043 USP7Q93009 1102 aa5.41□□□□□ -1.54
PTCD3-216ENST00000487043 WNK4Q96J92 1243 aa5.41□□□□□ -1.54
PTCD3-216ENST00000487043 HEXIM2Q96MH2 286 aaKnown RBP5.41□□□□□ -1.54
PTCD3-216ENST00000487043 FCRL3Q96P31 734 aaPredicted RBP5.41□□□□□ -1.54
PTCD3-216ENST00000487043 PHF20Q9BVI0 1012 aa5.41□□□□□ -1.54
PTCD3-216ENST00000487043 HDAC8Q9BY41 377 aa5.41□□□□□ -1.54
PTCD3-216ENST00000487043 CHMP4AQ9BY43 222 aa5.41□□□□□ -1.54
PTCD3-216ENST00000487043 TMEFF2Q9UIK5 374 aaPredicted RBP5.41□□□□□ -1.54
PTCD3-216ENST00000487043 ST14Q9Y5Y6 855 aa5.41□□□□□ -1.54
PTCD3-216ENST00000487043 EID1Q9Y6B2 187 aa5.41□□□□□ -1.54
PTCD3-216ENST00000487043 ABCA10Q8WWZ4 1543 aa5.41□□□□□ -1.54
PTCD3-216ENST00000487043 THOC2Q8NI27 1593 aaKnown RBP5.41□□□□□ -1.54
PTCD3-216ENST00000487043 CUX2O14529 1486 aa5.4□□□□□ -1.54
PTCD3-216ENST00000487043 GNAT3A8MTJ3 354 aa5.4□□□□□ -1.54
PTCD3-216ENST00000487043 B4E1Z4 1266 aa5.4□□□□□ -1.54
PTCD3-216ENST00000487043 RNASE1P07998 156 aaKnown RBP5.4□□□□□ -1.54
PTCD3-216ENST00000487043 CD96P40200 585 aa5.4□□□□□ -1.54
PTCD3-216ENST00000487043 SEPHS1P49903 392 aa5.4□□□□□ -1.54
PTCD3-216ENST00000487043 ITKQ08881 620 aa5.4□□□□□ -1.54
PTCD3-216ENST00000487043 STAT4Q14765 748 aa5.4□□□□□ -1.54
PTCD3-216ENST00000487043 SKOR2Q2VWA4 1001 aaPredicted RBP5.4□□□□□ -1.54
PTCD3-216ENST00000487043 ZCCHC8Q6NZY4 707 aaKnown RBP5.4□□□□□ -1.54
PTCD3-216ENST00000487043 IFNL3Q8IZI9 196 aa5.4□□□□□ -1.54
PTCD3-216ENST00000487043 MFSD4AQ8N468 514 aa5.4□□□□□ -1.54
PTCD3-216ENST00000487043 DAGLBQ8NCG7 672 aa5.4□□□□□ -1.54
PTCD3-216ENST00000487043 NPLOC4Q8TAT6 608 aa5.4□□□□□ -1.54
PTCD3-216ENST00000487043 ENOX1Q8TC92 643 aaKnown RBP5.4□□□□□ -1.54
PTCD3-216ENST00000487043 TCTN2Q96GX1 697 aa5.4□□□□□ -1.54
PTCD3-216ENST00000487043 SLC38A3Q99624 504 aa5.4□□□□□ -1.54
PTCD3-216ENST00000487043 XPO5Q9HAV4 1204 aaKnown RBP eCLIP5.4□□□□□ -1.54
PTCD3-216ENST00000487043 SLC5A4Q9NY91 659 aa5.4□□□□□ -1.54
PTCD3-216ENST00000487043 CLEC1BQ9P126 229 aa5.4□□□□□ -1.54
PTCD3-216ENST00000487043 SAMD15Q9P1V8 674 aa5.4□□□□□ -1.54
PTCD3-216ENST00000487043 VAV3Q9UKW4 847 aa5.4□□□□□ -1.54
PTCD3-216ENST00000487043 FAN1Q9Y2M0 1017 aa5.4□□□□□ -1.54
PTCD3-216ENST00000487043 CAPN6Q9Y6Q1 641 aa5.4□□□□□ -1.54
PTCD3-216ENST00000487043 IFT140Q96RY7 1462 aa5.39□□□□□ -1.55
PTCD3-216ENST00000487043 TARBP1Q13395 1621 aaKnown RBP5.39□□□□□ -1.55
PTCD3-216ENST00000487043 FAM155AB1AL88 458 aaPredicted RBP5.39□□□□□ -1.55
PTCD3-216ENST00000487043 GPR39O43194 453 aa5.39□□□□□ -1.55
PTCD3-216ENST00000487043 MSCO60682 206 aa5.39□□□□□ -1.55
PTCD3-216ENST00000487043 GSTM1P09488 218 aa5.39□□□□□ -1.55
PTCD3-216ENST00000487043 ZNF865P0CJ78 1059 aaPredicted RBP5.39□□□□□ -1.55
PTCD3-216ENST00000487043 SRGAP2CP0DJJ0 459 aa5.39□□□□□ -1.55
PTCD3-216ENST00000487043 PLS3P13797 630 aa5.39□□□□□ -1.55
PTCD3-216ENST00000487043 VAV1P15498 845 aa5.39□□□□□ -1.55
PTCD3-216ENST00000487043 NAT1P18440 290 aa5.39□□□□□ -1.55
PTCD3-216ENST00000487043 ID4P47928 161 aa5.39□□□□□ -1.55
PTCD3-216ENST00000487043 SCNN1BP51168 640 aa5.39□□□□□ -1.55
PTCD3-216ENST00000487043 GPR85P60893 370 aa5.39□□□□□ -1.55
PTCD3-216ENST00000487043 TMPRSS15P98073 1019 aa5.39□□□□□ -1.55
PTCD3-216ENST00000487043 PRKCQQ04759 706 aa5.39□□□□□ -1.55
PTCD3-216ENST00000487043 TTF1Q15361 905 aaPredicted RBP5.39□□□□□ -1.55
PTCD3-216ENST00000487043 RNF219Q5W0B1 726 aaPredicted RBP5.39□□□□□ -1.55
PTCD3-216ENST00000487043 ABHD17CQ6PCB6 329 aa5.39□□□□□ -1.55
PTCD3-216ENST00000487043 DDX53Q86TM3 631 aaKnown RBP5.39□□□□□ -1.55
PTCD3-216ENST00000487043 ZC3H7AQ8IWR0 971 aaKnown RBP5.39□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms