RNA–Protein interactions for RNA: ENST00000487010.1

COL3A1-206, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2

Gene COL3A1, Length 2,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-206ENST00000487010 CCDC181Q5TID7 509 aa13.55□□□□□ -0.24
COL3A1-206ENST00000487010 C12orf60Q5U649 245 aa13.55□□□□□ -0.24
COL3A1-206ENST00000487010 TSEN2Q8NCE0 465 aaKnown RBP13.55□□□□□ -0.24
COL3A1-206ENST00000487010 HPS3Q969F9 1004 aa13.55□□□□□ -0.24
COL3A1-206ENST00000487010 CAVIN3Q969G5 261 aa13.55□□□□□ -0.24
COL3A1-206ENST00000487010 FAM207AQ9NSI2 230 aaPredicted RBP13.55□□□□□ -0.24
COL3A1-206ENST00000487010 STIM2Q9P246 746 aa13.55□□□□□ -0.24
COL3A1-206ENST00000487010 CCDC88AQ3V6T2 1871 aa13.55□□□□□ -0.24
COL3A1-206ENST00000487010 CCNT1O60563 726 aaKnown RBP13.54□□□□□ -0.24
COL3A1-206ENST00000487010 CXCR5P32302 372 aa13.54□□□□□ -0.24
COL3A1-206ENST00000487010 PAFAH1B1P43034 410 aa13.54□□□□□ -0.24
COL3A1-206ENST00000487010 MAGEA1P43355 309 aa13.54□□□□□ -0.24
COL3A1-206ENST00000487010 GNGT1P63211 74 aa13.54□□□□□ -0.24
COL3A1-206ENST00000487010 MRPS25P82663 173 aaKnown RBP13.54□□□□□ -0.24
COL3A1-206ENST00000487010 MAN2A1Q16706 1144 aa13.54□□□□□ -0.24
COL3A1-206ENST00000487010 LETM2Q2VYF4 491 aa13.54□□□□□ -0.24
COL3A1-206ENST00000487010 KRT25Q7Z3Z0 450 aa13.54□□□□□ -0.24
COL3A1-206ENST00000487010 CCDC84Q86UT8 332 aaPredicted RBP13.54□□□□□ -0.24
COL3A1-206ENST00000487010 MMTAG2Q9BU76 263 aaKnown RBP13.54□□□□□ -0.24
COL3A1-206ENST00000487010 ZMYND12Q9H0C1 365 aa13.54□□□□□ -0.24
COL3A1-206ENST00000487010 EHD4Q9H223 541 aa13.54□□□□□ -0.24
COL3A1-206ENST00000487010 MMRN2Q9H8L6 949 aa13.54□□□□□ -0.24
COL3A1-206ENST00000487010 SLC39A2Q9NP94 309 aa13.54□□□□□ -0.24
COL3A1-206ENST00000487010 SMARCAL1Q9NZC9 954 aa13.54□□□□□ -0.24
COL3A1-206ENST00000487010 MAST2Q6P0Q8 1798 aa13.54□□□□□ -0.24
COL3A1-206ENST00000487010 COL14A1Q05707 1796 aaKnown RBP13.54□□□□□ -0.24
COL3A1-206ENST00000487010 USP17L3A6NCW0 530 aa13.54□□□□□ -0.24
COL3A1-206ENST00000487010 USP17L4A6NCW7 530 aa13.54□□□□□ -0.24
COL3A1-206ENST00000487010 PALM3A6NDB9 673 aaPredicted RBP13.54□□□□□ -0.24
COL3A1-206ENST00000487010 LRRC53A6NM62 1247 aa13.54□□□□□ -0.24
COL3A1-206ENST00000487010 HSF2BPO75031 334 aa13.54□□□□□ -0.24
COL3A1-206ENST00000487010 HIBADHP31937 336 aaKnown RBP13.54□□□□□ -0.24
COL3A1-206ENST00000487010 TECP42680 631 aa13.54□□□□□ -0.24
COL3A1-206ENST00000487010 SKOR1P84550 965 aa13.54□□□□□ -0.24
COL3A1-206ENST00000487010 SF3B2Q13435 895 aaKnown RBP13.54□□□□□ -0.24
COL3A1-206ENST00000487010 ITPK1Q13572 414 aa13.54□□□□□ -0.24
COL3A1-206ENST00000487010 NONOQ15233 471 aaKnown RBP eCLIP13.54□□□□□ -0.24
COL3A1-206ENST00000487010 GLE1Q53GS7 698 aaKnown RBP13.54□□□□□ -0.24
COL3A1-206ENST00000487010 RRAGAQ7L523 313 aa13.54□□□□□ -0.24
COL3A1-206ENST00000487010 USP17L1Q7RTZ2 530 aa13.54□□□□□ -0.24
COL3A1-206ENST00000487010 CCDC155Q8N6L0 562 aa13.54□□□□□ -0.24
COL3A1-206ENST00000487010 BCAS4Q8TDM0 211 aa13.54□□□□□ -0.24
COL3A1-206ENST00000487010 CELF1Q92879 486 aaKnown RBP13.54□□□□□ -0.24
COL3A1-206ENST00000487010 DYNLL2Q96FJ2 89 aa13.54□□□□□ -0.24
COL3A1-206ENST00000487010 PSMB7Q99436 277 aa13.54□□□□□ -0.24
COL3A1-206ENST00000487010 EHD2Q9NZN4 543 aa13.54□□□□□ -0.24
COL3A1-206ENST00000487010 SALL4Q9UJQ4 1053 aa13.54□□□□□ -0.24
COL3A1-206ENST00000487010 ZNF652Q9Y2D9 606 aa13.54□□□□□ -0.24
COL3A1-206ENST00000487010 FAM169AQ9Y6X4 670 aa13.54□□□□□ -0.24
COL3A1-206ENST00000487010 ABCB11O95342 1321 aa13.53□□□□□ -0.24
COL3A1-206ENST00000487010 LOC102724428A0A0B4J2F2 783 aa13.53□□□□□ -0.24
COL3A1-206ENST00000487010 NCK2O43639 380 aa13.53□□□□□ -0.24
COL3A1-206ENST00000487010 SIK1P57059 783 aa13.53□□□□□ -0.24
COL3A1-206ENST00000487010 NNTQ13423 1086 aa13.53□□□□□ -0.24
COL3A1-206ENST00000487010 ASTE1Q2TB18 679 aaPredicted RBP13.53□□□□□ -0.24
COL3A1-206ENST00000487010 TTMPQ5BVD1 217 aa13.53□□□□□ -0.24
COL3A1-206ENST00000487010 MICALL1Q8N3F8 863 aa13.53□□□□□ -0.24
COL3A1-206ENST00000487010 BAP1Q92560 729 aa13.53□□□□□ -0.24
COL3A1-206ENST00000487010 ARL8AQ96BM9 186 aa13.53□□□□□ -0.24
COL3A1-206ENST00000487010 CALML4Q96GE6 196 aa13.53□□□□□ -0.24
COL3A1-206ENST00000487010 LZTS2Q9BRK4 669 aa13.53□□□□□ -0.24
COL3A1-206ENST00000487010 TLR10Q9BXR5 811 aa13.53□□□□□ -0.24
COL3A1-206ENST00000487010 MKNK2Q9HBH9 465 aa13.53□□□□□ -0.24
COL3A1-206ENST00000487010 TFCP2L1Q9NZI6 479 aa13.53□□□□□ -0.24
COL3A1-206ENST00000487010 SHTN1A0MZ66 631 aa13.52□□□□□ -0.24
COL3A1-206ENST00000487010 A6NNZ2 444 aa13.52□□□□□ -0.24
COL3A1-206ENST00000487010 FGFR1OPO95684 399 aaKnown RBP13.52□□□□□ -0.24
COL3A1-206ENST00000487010 TUBB8Q3ZCM7 444 aa13.52□□□□□ -0.24
COL3A1-206ENST00000487010 KLHDC7AQ5VTJ3 777 aa13.52□□□□□ -0.24
COL3A1-206ENST00000487010 C8orf74Q6P047 294 aa13.52□□□□□ -0.24
COL3A1-206ENST00000487010 SV2BQ7L1I2 683 aa13.52□□□□□ -0.24
COL3A1-206ENST00000487010 NEK8Q86SG6 692 aa13.52□□□□□ -0.24
COL3A1-206ENST00000487010 RNF10Q8N5U6 811 aaKnown RBP13.52□□□□□ -0.24
COL3A1-206ENST00000487010 ACSBG1Q96GR2 724 aa13.52□□□□□ -0.24
COL3A1-206ENST00000487010 RUFY1Q96T51 708 aa13.52□□□□□ -0.24
COL3A1-206ENST00000487010 RBM12Q9NTZ6 932 aaKnown RBP13.52□□□□□ -0.24
COL3A1-206ENST00000487010 MTMR7Q9Y216 660 aa13.52□□□□□ -0.24
COL3A1-206ENST00000487010 PVALEFA0A1B0GWK0 134 aa13.52□□□□□ -0.25
COL3A1-206ENST00000487010 TSPY3P0CV98 308 aa13.52□□□□□ -0.25
COL3A1-206ENST00000487010 TSPY8P0CW00 308 aa13.52□□□□□ -0.25
COL3A1-206ENST00000487010 GTF2A1P52655 376 aaPredicted RBP13.52□□□□□ -0.25
COL3A1-206ENST00000487010 NAPAP54920 295 aa13.52□□□□□ -0.25
COL3A1-206ENST00000487010 PDXDC1Q6P996 788 aa13.52□□□□□ -0.25
COL3A1-206ENST00000487010 UNC13DQ70J99 1090 aa13.52□□□□□ -0.25
COL3A1-206ENST00000487010 MTMR8Q96EF0 704 aa13.52□□□□□ -0.25
COL3A1-206ENST00000487010 NOX5Q96PH1 765 aa13.52□□□□□ -0.25
COL3A1-206ENST00000487010 TMEM47Q9BQJ4 181 aa13.52□□□□□ -0.25
COL3A1-206ENST00000487010 EDEM3Q9BZQ6 932 aa13.52□□□□□ -0.25
COL3A1-206ENST00000487010 TSKSQ9UJT2 592 aa13.52□□□□□ -0.25
COL3A1-206ENST00000487010 WNK3Q9BYP7 1800 aa13.52□□□□□ -0.25
COL3A1-206ENST00000487010 ROBO3Q96MS0 1386 aa13.51□□□□□ -0.25
COL3A1-206ENST00000487010 SSU72P8A0A1W2PR75 194 aa13.51□□□□□ -0.25
COL3A1-206ENST00000487010 SMCO2A6NFE2 343 aa13.51□□□□□ -0.25
COL3A1-206ENST00000487010 MYMKA6NI61 221 aa13.51□□□□□ -0.25
COL3A1-206ENST00000487010 ERLIN2O94905 339 aa13.51□□□□□ -0.25
COL3A1-206ENST00000487010 RASSF7Q02833 373 aa13.51□□□□□ -0.25
COL3A1-206ENST00000487010 GFPT1Q06210 699 aaPredicted RBP13.51□□□□□ -0.25
COL3A1-206ENST00000487010 GRB10Q13322 594 aa13.51□□□□□ -0.25
COL3A1-206ENST00000487010 CLEC4GQ6UXB4 293 aa13.51□□□□□ -0.25
COL3A1-206ENST00000487010 PLCD3Q8N3E9 789 aa13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms