RNA–Protein interactions for RNA: ENST00000486758.5

SHROOM3-208, Transcript of shroom family member 3, human

TSL 2

Gene SHROOM3, Length 3,766 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHROOM3-208	ENST00000486758	NKX1-1	Q15270	411 aa	Predicted RBP	13.66	□□□□□ -0.22
SHROOM3-208	ENST00000486758	TRAPPC3L	Q5T215	181 aa		13.66	□□□□□ -0.22
SHROOM3-208	ENST00000486758	PTF1A	Q7RTS3	328 aa		13.66	□□□□□ -0.22
SHROOM3-208	ENST00000486758	BMP2K	Q9NSY1	1161 aa	Predicted RBP	13.66	□□□□□ -0.22
SHROOM3-208	ENST00000486758	DMGDH	Q9UI17	866 aa	Known RBP	13.66	□□□□□ -0.22
SHROOM3-208	ENST00000486758	ABCC12	Q96J65	1359 aa		13.66	□□□□□ -0.22
SHROOM3-208	ENST00000486758	TCRBV5S4A2T	A0A5A2	114 aa		13.66	□□□□□ -0.22
SHROOM3-208	ENST00000486758	FTCD	O95954	541 aa		13.66	□□□□□ -0.22
SHROOM3-208	ENST00000486758	SLC16A2	P36021	539 aa		13.66	□□□□□ -0.22
SHROOM3-208	ENST00000486758	TMEM266	Q2M3C6	531 aa		13.66	□□□□□ -0.22
SHROOM3-208	ENST00000486758	TMC4	Q7Z404	712 aa		13.66	□□□□□ -0.22
SHROOM3-208	ENST00000486758	ZNF804A	Q7Z570	1209 aa		13.66	□□□□□ -0.22
SHROOM3-208	ENST00000486758	CABP7	Q86V35	215 aa		13.66	□□□□□ -0.22
SHROOM3-208	ENST00000486758	CXorf56	Q9H5V9	222 aa		13.66	□□□□□ -0.22
SHROOM3-208	ENST00000486758	ZNF287	Q9HBT7	754 aa		13.66	□□□□□ -0.22
SHROOM3-208	ENST00000486758	C6orf50	Q9HD87	102 aa		13.66	□□□□□ -0.22
SHROOM3-208	ENST00000486758	PACSIN2	Q9UNF0	486 aa	Predicted RBP	13.66	□□□□□ -0.22
SHROOM3-208	ENST00000486758		A0A087X0B3	334 aa		13.65	□□□□□ -0.22
SHROOM3-208	ENST00000486758	NEBL	O76041	1014 aa		13.65	□□□□□ -0.22
SHROOM3-208	ENST00000486758	ZBTB7A	O95365	584 aa		13.65	□□□□□ -0.22
SHROOM3-208	ENST00000486758	CCDC172	P0C7W6	258 aa		13.65	□□□□□ -0.22
SHROOM3-208	ENST00000486758	CLNS1A	P54105	237 aa	Known RBP	13.65	□□□□□ -0.22
SHROOM3-208	ENST00000486758	DOK7	Q18PE1	504 aa		13.65	□□□□□ -0.22
SHROOM3-208	ENST00000486758	TMTC3	Q6ZXV5	915 aa		13.65	□□□□□ -0.22
SHROOM3-208	ENST00000486758	UHMK1	Q8TAS1	419 aa	Known RBP	13.65	□□□□□ -0.22
SHROOM3-208	ENST00000486758	ARL8A	Q96BM9	186 aa		13.65	□□□□□ -0.22
SHROOM3-208	ENST00000486758	KRT12	Q99456	494 aa		13.65	□□□□□ -0.22
SHROOM3-208	ENST00000486758	SELENOS	Q9BQE4	189 aa		13.65	□□□□□ -0.22
SHROOM3-208	ENST00000486758	NYX	Q9GZU5	481 aa		13.65	□□□□□ -0.22
SHROOM3-208	ENST00000486758	SLC24A3	Q9HC58	644 aa		13.65	□□□□□ -0.22
SHROOM3-208	ENST00000486758	EIF4ENIF1	Q9NRA8	985 aa	Known RBP	13.65	□□□□□ -0.22
SHROOM3-208	ENST00000486758	FAM184B	Q9ULE4	1060 aa		13.65	□□□□□ -0.22
SHROOM3-208	ENST00000486758	BTD	P43251	543 aa		13.65	□□□□□ -0.22
SHROOM3-208	ENST00000486758	MS4A14	Q96JA4	679 aa		13.65	□□□□□ -0.22
SHROOM3-208	ENST00000486758	ANKRD2	Q9GZV1	360 aa		13.65	□□□□□ -0.22
SHROOM3-208	ENST00000486758	FAM196B	A6NMK8	535 aa		13.65	□□□□□ -0.23
SHROOM3-208	ENST00000486758	INTS5	Q6P9B9	1019 aa	Known RBP	13.65	□□□□□ -0.23
SHROOM3-208	ENST00000486758	N4BP2L2	Q92802	583 aa	Predicted RBP	13.65	□□□□□ -0.23
SHROOM3-208	ENST00000486758	GJA10	Q969M2	543 aa		13.65	□□□□□ -0.23
SHROOM3-208	ENST00000486758	KANSL2	Q9H9L4	492 aa		13.65	□□□□□ -0.23
SHROOM3-208	ENST00000486758	EIF4E1B	A6NMX2	242 aa	Known RBP	13.64	□□□□□ -0.23
SHROOM3-208	ENST00000486758	ADAMTS3	O15072	1205 aa		13.64	□□□□□ -0.23
SHROOM3-208	ENST00000486758	HEXIM1	O94992	359 aa	Known RBP	13.64	□□□□□ -0.23
SHROOM3-208	ENST00000486758	ADAT2	Q7Z6V5	191 aa	Known RBP	13.64	□□□□□ -0.23
SHROOM3-208	ENST00000486758	VGLL2	Q8N8G2	317 aa		13.64	□□□□□ -0.23
SHROOM3-208	ENST00000486758	RAB21	Q9UL25	225 aa		13.64	□□□□□ -0.23
SHROOM3-208	ENST00000486758	CAMTA1	Q9Y6Y1	1673 aa		13.64	□□□□□ -0.23
SHROOM3-208	ENST00000486758	XIRP1	Q702N8	1843 aa	Known RBP	13.64	□□□□□ -0.23
SHROOM3-208	ENST00000486758	PLEK	P08567	350 aa	Predicted RBP	13.64	□□□□□ -0.23
SHROOM3-208	ENST00000486758	PEX19	P40855	299 aa		13.64	□□□□□ -0.23
SHROOM3-208	ENST00000486758	PRPF3	O43395	683 aa	Known RBP	13.63	□□□□□ -0.23
SHROOM3-208	ENST00000486758	NTSR2	O95665	410 aa		13.63	□□□□□ -0.23
SHROOM3-208	ENST00000486758	SYF2	O95926	243 aa	Known RBP	13.63	□□□□□ -0.23
SHROOM3-208	ENST00000486758	EZR	P15311	586 aa	Known RBP	13.63	□□□□□ -0.23
SHROOM3-208	ENST00000486758	CACNB3	P54284	484 aa		13.63	□□□□□ -0.23
SHROOM3-208	ENST00000486758	EHHADH	Q08426	723 aa		13.63	□□□□□ -0.23
SHROOM3-208	ENST00000486758	RAPGEF1	Q13905	1077 aa		13.63	□□□□□ -0.23
SHROOM3-208	ENST00000486758	PPP2R5A	Q15172	486 aa		13.63	□□□□□ -0.23
SHROOM3-208	ENST00000486758	MSL1	Q68DK7	614 aa		13.63	□□□□□ -0.23
SHROOM3-208	ENST00000486758	DYDC1	Q8WWB3	177 aa		13.63	□□□□□ -0.23
SHROOM3-208	ENST00000486758	UTP3	Q9NQZ2	479 aa	Known RBP eCLIP	13.63	□□□□□ -0.23
SHROOM3-208	ENST00000486758	MYO1A	Q9UBC5	1043 aa		13.63	□□□□□ -0.23
SHROOM3-208	ENST00000486758	TRAF5	O00463	557 aa		13.63	□□□□□ -0.23
SHROOM3-208	ENST00000486758	GNAQ	P50148	359 aa		13.63	□□□□□ -0.23
SHROOM3-208	ENST00000486758	DPYD	Q12882	1025 aa		13.63	□□□□□ -0.23
SHROOM3-208	ENST00000486758	NFIX	Q14938	502 aa		13.63	□□□□□ -0.23
SHROOM3-208	ENST00000486758	MB21D1	Q8N884	522 aa		13.63	□□□□□ -0.23
SHROOM3-208	ENST00000486758	PIGS	Q96S52	555 aa		13.63	□□□□□ -0.23
SHROOM3-208	ENST00000486758	TACO1	Q9BSH4	297 aa	Known RBP	13.63	□□□□□ -0.23
SHROOM3-208	ENST00000486758	RGPD5	Q99666	1765 aa		13.63	□□□□□ -0.23
SHROOM3-208	ENST00000486758	GOLGA8K	D6RF30	607 aa		13.63	□□□□□ -0.23
SHROOM3-208	ENST00000486758	PLS1	Q14651	629 aa		13.63	□□□□□ -0.23
SHROOM3-208	ENST00000486758	ALX1	Q15699	326 aa		13.63	□□□□□ -0.23
SHROOM3-208	ENST00000486758	VPS72	Q15906	364 aa		13.63	□□□□□ -0.23
SHROOM3-208	ENST00000486758	USH1G	Q495M9	461 aa		13.63	□□□□□ -0.23
SHROOM3-208	ENST00000486758	CCNI2	Q6ZMN8	369 aa	Predicted RBP	13.63	□□□□□ -0.23
SHROOM3-208	ENST00000486758	FNBP4	Q8N3X1	1017 aa	Predicted RBP	13.63	□□□□□ -0.23
SHROOM3-208	ENST00000486758	SNX29	Q8TEQ0	813 aa		13.63	□□□□□ -0.23
SHROOM3-208	ENST00000486758	CNOT6L	Q96LI5	555 aa	Known RBP	13.63	□□□□□ -0.23
SHROOM3-208	ENST00000486758	ARPP21	Q9UBL0	812 aa	Predicted RBP	13.63	□□□□□ -0.23
SHROOM3-208	ENST00000486758	NONO	Q15233	471 aa	Known RBP eCLIP	13.62	□□□□□ -0.23
SHROOM3-208	ENST00000486758	LUC7L	Q9NQ29	371 aa	Known RBP	13.62	□□□□□ -0.23
SHROOM3-208	ENST00000486758	BSDC1	Q9NW68	430 aa	Predicted RBP	13.62	□□□□□ -0.23
SHROOM3-208	ENST00000486758	PKD2L1	Q9P0L9	805 aa		13.62	□□□□□ -0.23
SHROOM3-208	ENST00000486758	ZSCAN5C	A6NGD5	496 aa	Predicted RBP	13.62	□□□□□ -0.23
SHROOM3-208	ENST00000486758	FGFR2	P21802	821 aa		13.62	□□□□□ -0.23
SHROOM3-208	ENST00000486758	POLD1	P28340	1107 aa		13.62	□□□□□ -0.23
SHROOM3-208	ENST00000486758	SNAP25	P60880	206 aa		13.62	□□□□□ -0.23
SHROOM3-208	ENST00000486758	ZYX	Q15942	572 aa	Known RBP	13.62	□□□□□ -0.23
SHROOM3-208	ENST00000486758	NAA35	Q5VZE5	725 aa		13.62	□□□□□ -0.23
SHROOM3-208	ENST00000486758	IFT20	Q8IY31	132 aa		13.62	□□□□□ -0.23
SHROOM3-208	ENST00000486758	TRIM58	Q8NG06	486 aa		13.62	□□□□□ -0.23
SHROOM3-208	ENST00000486758	NSUN4	Q96CB9	384 aa	Known RBP	13.62	□□□□□ -0.23
SHROOM3-208	ENST00000486758	ZC3H12C	Q9C0D7	883 aa	Known RBP	13.62	□□□□□ -0.23
SHROOM3-208	ENST00000486758	RIC1	Q4ADV7	1423 aa		13.62	□□□□□ -0.23
SHROOM3-208	ENST00000486758	GTPBP6	O43824	516 aa	Predicted RBP	13.62	□□□□□ -0.23
SHROOM3-208	ENST00000486758	CEP104	O60308	925 aa		13.62	□□□□□ -0.23
SHROOM3-208	ENST00000486758	TMEM260	Q9NX78	707 aa		13.62	□□□□□ -0.23
SHROOM3-208	ENST00000486758	ODF2L	Q9ULJ1	636 aa		13.62	□□□□□ -0.23
SHROOM3-208	ENST00000486758	MARF1	Q9Y4F3	1742 aa	Known RBP	13.62	□□□□□ -0.23

Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms