RNA–Protein interactions for RNA: ENST00000486023.1

COL6A1-204, Transcript of collagen type VI alpha 1 chain, humanhuman

TSL 2

Gene COL6A1, Length 968 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-204ENST00000486023 A0A0U1RQG5 324 aaPredicted RBP20.46■□□□□ 0.87
COL6A1-204ENST00000486023 A0A1W2PPC1 479 aa20.46■□□□□ 0.87
COL6A1-204ENST00000486023 SOX1O00570 391 aaPredicted RBP20.46■□□□□ 0.87
COL6A1-204ENST00000486023 DDAH1O94760 285 aa20.46■□□□□ 0.87
COL6A1-204ENST00000486023 MYCLP12524 364 aaPredicted RBP20.46■□□□□ 0.87
COL6A1-204ENST00000486023 CHMP4BP1P59074 171 aa20.46■□□□□ 0.87
COL6A1-204ENST00000486023 PSMC6P62333 389 aa20.46■□□□□ 0.87
COL6A1-204ENST00000486023 PWP2Q15269 919 aaKnown RBP20.46■□□□□ 0.87
COL6A1-204ENST00000486023 RASEFQ8IZ41 740 aa20.46■□□□□ 0.87
COL6A1-204ENST00000486023 SCFD2Q8WU76 684 aa20.46■□□□□ 0.87
COL6A1-204ENST00000486023 LRCH3Q96II8 777 aa20.46■□□□□ 0.87
COL6A1-204ENST00000486023 ARVCFO00192 962 aa20.45■□□□□ 0.86
COL6A1-204ENST00000486023 EDNRBP24530 442 aa20.45■□□□□ 0.86
COL6A1-204ENST00000486023 FAAP100Q0VG06 881 aa20.45■□□□□ 0.86
COL6A1-204ENST00000486023 STXBP2Q15833 593 aa20.45■□□□□ 0.86
COL6A1-204ENST00000486023 SYNE3Q6ZMZ3 975 aa20.45■□□□□ 0.86
COL6A1-204ENST00000486023 RRP36Q96EU6 259 aaKnown RBP20.45■□□□□ 0.86
COL6A1-204ENST00000486023 ZFP91Q96JP5 570 aaPredicted RBP20.45■□□□□ 0.86
COL6A1-204ENST00000486023 NAP1L2Q9ULW6 460 aaPredicted RBP20.45■□□□□ 0.86
COL6A1-204ENST00000486023 Q9Y3F1 56 aa20.45■□□□□ 0.86
COL6A1-204ENST00000486023 hCG_1642624A0A1W2PR95 340 aa20.44■□□□□ 0.86
COL6A1-204ENST00000486023 RBM47A0AV96 593 aaKnown RBP20.44■□□□□ 0.86
COL6A1-204ENST00000486023 GCOM1H8Y6P7 765 aaPredicted RBP20.44■□□□□ 0.86
COL6A1-204ENST00000486023 OPLAHO14841 1288 aa20.44■□□□□ 0.86
COL6A1-204ENST00000486023 PLEKHA8P1O95397 391 aa20.44■□□□□ 0.86
COL6A1-204ENST00000486023 POLR2MP0CAP2 368 aa20.44■□□□□ 0.86
COL6A1-204ENST00000486023 ITGB8P26012 769 aa20.44■□□□□ 0.86
COL6A1-204ENST00000486023 FGD1P98174 961 aa20.44■□□□□ 0.86
COL6A1-204ENST00000486023 TRAF1Q13077 416 aa20.44■□□□□ 0.86
COL6A1-204ENST00000486023 TTLL4Q14679 1199 aa20.44■□□□□ 0.86
COL6A1-204ENST00000486023 LY6KQ17RY6 165 aa20.44■□□□□ 0.86
COL6A1-204ENST00000486023 ADCK5Q3MIX3 580 aa20.44■□□□□ 0.86
COL6A1-204ENST00000486023 ANKRD33Q7Z3H0 272 aa20.44■□□□□ 0.86
COL6A1-204ENST00000486023 MICU3Q86XE3 530 aa20.44■□□□□ 0.86
COL6A1-204ENST00000486023 PXMP2Q9NR77 195 aa20.44■□□□□ 0.86
COL6A1-204ENST00000486023 SEC63Q9UGP8 760 aaKnown RBP20.44■□□□□ 0.86
COL6A1-204ENST00000486023 SORBS3O60504 671 aa20.43■□□□□ 0.86
COL6A1-204ENST00000486023 ARIH2O95376 493 aa20.43■□□□□ 0.86
COL6A1-204ENST00000486023 NR3C2P08235 984 aa20.43■□□□□ 0.86
COL6A1-204ENST00000486023 LIFRP42702 1097 aa20.43■□□□□ 0.86
COL6A1-204ENST00000486023 CPT1AP50416 773 aa20.43■□□□□ 0.86
COL6A1-204ENST00000486023 HSD17B4P51659 736 aa20.43■□□□□ 0.86
COL6A1-204ENST00000486023 ITGA7Q13683 1181 aa20.43■□□□□ 0.86
COL6A1-204ENST00000486023 SRBD1Q8N5C6 995 aaKnown RBP20.43■□□□□ 0.86
COL6A1-204ENST00000486023 PPP1R13LQ8WUF5 828 aa20.43■□□□□ 0.86
COL6A1-204ENST00000486023 TOX2Q96NM4 488 aa20.43■□□□□ 0.86
COL6A1-204ENST00000486023 IWS1Q96ST2 819 aa20.43■□□□□ 0.86
COL6A1-204ENST00000486023 MTA3Q9BTC8 594 aa20.43■□□□□ 0.86
COL6A1-204ENST00000486023 TLR3O15455 904 aaKnown RBP20.42■□□□□ 0.86
COL6A1-204ENST00000486023 CABYRO75952 493 aa20.42■□□□□ 0.86
COL6A1-204ENST00000486023 CALM1P0DP23 149 aa20.42■□□□□ 0.86
COL6A1-204ENST00000486023 CALM2P0DP24 149 aa20.42■□□□□ 0.86
COL6A1-204ENST00000486023 CALM3P0DP25 149 aa20.42■□□□□ 0.86
COL6A1-204ENST00000486023 CPA1P15085 419 aa20.42■□□□□ 0.86
COL6A1-204ENST00000486023 GNAQP50148 359 aa20.42■□□□□ 0.86
COL6A1-204ENST00000486023 CDK7P50613 346 aa20.42■□□□□ 0.86
COL6A1-204ENST00000486023 NKX3-2P78367 333 aa20.42■□□□□ 0.86
COL6A1-204ENST00000486023 BRDTQ58F21 947 aaPredicted RBP20.42■□□□□ 0.86
COL6A1-204ENST00000486023 DHX32Q7L7V1 743 aaKnown RBP20.42■□□□□ 0.86
COL6A1-204ENST00000486023 MAP3K14Q99558 947 aa20.42■□□□□ 0.86
COL6A1-204ENST00000486023 LZTS2Q9BRK4 669 aa20.42■□□□□ 0.86
COL6A1-204ENST00000486023 MROH7Q68CQ1 1323 aa20.42■□□□□ 0.86
COL6A1-204ENST00000486023 KIAA0355O15063 1070 aa20.41■□□□□ 0.86
COL6A1-204ENST00000486023 KRT32Q14532 448 aa20.41■□□□□ 0.86
COL6A1-204ENST00000486023 FAM47CQ5HY64 1035 aa20.41■□□□□ 0.86
COL6A1-204ENST00000486023 FANCBQ8NB91 859 aa20.41■□□□□ 0.86
COL6A1-204ENST00000486023 PPP1R12CQ9BZL4 782 aa20.41■□□□□ 0.86
COL6A1-204ENST00000486023 MAF1Q9H063 256 aa20.41■□□□□ 0.86
COL6A1-204ENST00000486023 POLR3EQ9NVU0 708 aa20.41■□□□□ 0.86
COL6A1-204ENST00000486023 PPP4R2Q9NY27 417 aa20.41■□□□□ 0.86
COL6A1-204ENST00000486023 MRVI1Q9Y6F6 885 aa20.41■□□□□ 0.86
COL6A1-204ENST00000486023 LCTP09848 1927 aa20.41■□□□□ 0.86
COL6A1-204ENST00000486023 NKRFO15226 690 aaKnown RBP eCLIP20.4■□□□□ 0.86
COL6A1-204ENST00000486023 EIF3JO75822 258 aaKnown RBP20.4■□□□□ 0.86
COL6A1-204ENST00000486023 CENPBP07199 599 aaPredicted RBP20.4■□□□□ 0.86
COL6A1-204ENST00000486023 SHHQ15465 462 aa20.4■□□□□ 0.86
COL6A1-204ENST00000486023 C9orf50Q5SZB4 431 aa20.4■□□□□ 0.86
COL6A1-204ENST00000486023 JAKMIP1Q96N16 626 aaKnown RBP20.4■□□□□ 0.86
COL6A1-204ENST00000486023 PDCD2LQ9BRP1 358 aa20.4■□□□□ 0.86
COL6A1-204ENST00000486023 SPZ1Q9BXG8 430 aa20.4■□□□□ 0.86
COL6A1-204ENST00000486023 TRPV6Q9H1D0 765 aa20.4■□□□□ 0.86
COL6A1-204ENST00000486023 GRIN2DO15399 1336 aa20.39■□□□□ 0.85
COL6A1-204ENST00000486023 GH1P01241 217 aa20.39■□□□□ 0.85
COL6A1-204ENST00000486023 EXOSC10Q01780 885 aaKnown RBP20.39■□□□□ 0.85
COL6A1-204ENST00000486023 FAM126BQ8IXS8 530 aa20.39■□□□□ 0.85
COL6A1-204ENST00000486023 SMARCC2Q8TAQ2 1214 aa20.39■□□□□ 0.85
COL6A1-204ENST00000486023 AFG1LQ8WV93 481 aa20.39■□□□□ 0.85
COL6A1-204ENST00000486023 MTG1Q9BT17 334 aaPredicted RBP20.39■□□□□ 0.85
COL6A1-204ENST00000486023 MAP3K20Q9NYL2 800 aaKnown RBP20.39■□□□□ 0.85
COL6A1-204ENST00000486023 BRPF3Q9ULD4 1205 aa20.39■□□□□ 0.85
COL6A1-204ENST00000486023 SZT2Q5T011 3432 aa20.38■□□□□ 0.85
COL6A1-204ENST00000486023 KLF18A0A0U1RQI7 1052 aa20.38■□□□□ 0.85
COL6A1-204ENST00000486023 TIMP1P01033 207 aa20.38■□□□□ 0.85
COL6A1-204ENST00000486023 PURAQ00577 322 aaKnown RBP20.38■□□□□ 0.85
COL6A1-204ENST00000486023 FPGSQ05932 587 aa20.38■□□□□ 0.85
COL6A1-204ENST00000486023 PGM5Q15124 567 aa20.38■□□□□ 0.85
COL6A1-204ENST00000486023 CCDC62Q6P9F0 684 aa20.38■□□□□ 0.85
COL6A1-204ENST00000486023 USP17L6PQ6QN14 398 aa20.38■□□□□ 0.85
COL6A1-204ENST00000486023 IL31RAQ8NI17 732 aa20.38■□□□□ 0.85
COL6A1-204ENST00000486023 CUL5Q93034 780 aa20.38■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms