RNA–Protein interactions for RNA: ENST00000485627.1

CTSA-208, Transcript of cathepsin A, human

TSL 3

Gene CTSA, Length 695 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CTSA-208	ENST00000485627	ALAS1	P13196	640 aa		10.8	□□□□□ -0.68
CTSA-208	ENST00000485627	PRPH	P41219	470 aa		10.8	□□□□□ -0.68
CTSA-208	ENST00000485627	MRE11	P49959	708 aa		10.8	□□□□□ -0.68
CTSA-208	ENST00000485627	USP11	P51784	963 aa		10.8	□□□□□ -0.68
CTSA-208	ENST00000485627	CALCRL	Q16602	461 aa		10.8	□□□□□ -0.68
CTSA-208	ENST00000485627	TMEM266	Q2M3C6	531 aa		10.8	□□□□□ -0.68
CTSA-208	ENST00000485627	CATSPERG	Q6ZRH7	1159 aa		10.8	□□□□□ -0.68
CTSA-208	ENST00000485627	CKAP2L	Q8IYA6	745 aa		10.8	□□□□□ -0.68
CTSA-208	ENST00000485627	REM2	Q8IYK8	340 aa	Predicted RBP	10.8	□□□□□ -0.68
CTSA-208	ENST00000485627	CPXCR1	Q8N123	301 aa		10.8	□□□□□ -0.68
CTSA-208	ENST00000485627	CNNM3	Q8NE01	707 aa		10.8	□□□□□ -0.68
CTSA-208	ENST00000485627	SLC10A4	Q96EP9	437 aa		10.8	□□□□□ -0.68
CTSA-208	ENST00000485627	OTUD5	Q96G74	571 aa		10.8	□□□□□ -0.68
CTSA-208	ENST00000485627	AGBL1	Q96MI9	1066 aa		10.8	□□□□□ -0.68
CTSA-208	ENST00000485627	SLC38A10	Q9HBR0	1119 aa		10.8	□□□□□ -0.68
CTSA-208	ENST00000485627	RAVER2	Q9HCJ3	691 aa	Known RBP	10.8	□□□□□ -0.68
CTSA-208	ENST00000485627	HOXC10	Q9NYD6	342 aa		10.8	□□□□□ -0.68
CTSA-208	ENST00000485627	HPSE	Q9Y251	543 aa		10.8	□□□□□ -0.68
CTSA-208	ENST00000485627	MRVI1	Q9Y6F6	885 aa		10.8	□□□□□ -0.68
CTSA-208	ENST00000485627	UNCX	A6NJT0	531 aa		10.79	□□□□□ -0.68
CTSA-208	ENST00000485627	PIK3CD	O00329	1044 aa		10.79	□□□□□ -0.68
CTSA-208	ENST00000485627	VWA5A	O00534	786 aa		10.79	□□□□□ -0.68
CTSA-208	ENST00000485627	POLR2D	O15514	142 aa	Known RBP	10.79	□□□□□ -0.68
CTSA-208	ENST00000485627	HOXA13	P31271	388 aa	Predicted RBP	10.79	□□□□□ -0.68
CTSA-208	ENST00000485627	DEK	P35659	375 aa	Known RBP	10.79	□□□□□ -0.68
CTSA-208	ENST00000485627	ZNF76	P36508	570 aa		10.79	□□□□□ -0.68
CTSA-208	ENST00000485627	MNX1	P50219	401 aa	Predicted RBP	10.79	□□□□□ -0.68
CTSA-208	ENST00000485627	GRIN1	Q05586	938 aa		10.79	□□□□□ -0.68
CTSA-208	ENST00000485627	PPP4R3A	Q6IN85	833 aa		10.79	□□□□□ -0.68
CTSA-208	ENST00000485627	KANK3	Q6NY19	840 aa		10.79	□□□□□ -0.68
CTSA-208	ENST00000485627	GADL1	Q6ZQY3	521 aa		10.79	□□□□□ -0.68
CTSA-208	ENST00000485627	MOB2	Q70IA6	237 aa		10.79	□□□□□ -0.68
CTSA-208	ENST00000485627	FCHSD1	Q86WN1	690 aa		10.79	□□□□□ -0.68
CTSA-208	ENST00000485627	CEP57L1	Q8IYX8	460 aa		10.79	□□□□□ -0.68
CTSA-208	ENST00000485627	SAMD3	Q8N6K7	520 aa		10.79	□□□□□ -0.68
CTSA-208	ENST00000485627	C4orf32	Q8N8J7	132 aa		10.79	□□□□□ -0.68
CTSA-208	ENST00000485627	RASSF8	Q8NHQ8	419 aa		10.79	□□□□□ -0.68
CTSA-208	ENST00000485627	SYMPK	Q92797	1274 aa	Known RBP	10.79	□□□□□ -0.68
CTSA-208	ENST00000485627	ATG4C	Q96DT6	458 aa		10.79	□□□□□ -0.68
CTSA-208	ENST00000485627	RAB34	Q9BZG1	259 aa		10.79	□□□□□ -0.68
CTSA-208	ENST00000485627	DDX25	Q9UHL0	483 aa	Known RBP	10.79	□□□□□ -0.68
CTSA-208	ENST00000485627	USP25	Q9UHP3	1055 aa		10.79	□□□□□ -0.68
CTSA-208	ENST00000485627	MYPN	Q86TC9	1320 aa		10.79	□□□□□ -0.68
CTSA-208	ENST00000485627	FSD2	A1L4K1	749 aa		10.78	□□□□□ -0.68
CTSA-208	ENST00000485627	SPDYE5	A6NIY4	337 aa		10.78	□□□□□ -0.68
CTSA-208	ENST00000485627	CA12	O43570	354 aa		10.78	□□□□□ -0.68
CTSA-208	ENST00000485627	TAL1	P17542	331 aa	Predicted RBP	10.78	□□□□□ -0.68
CTSA-208	ENST00000485627	UBA7	P41226	1012 aa		10.78	□□□□□ -0.68
CTSA-208	ENST00000485627	OAZ1	P54368	228 aa		10.78	□□□□□ -0.68
CTSA-208	ENST00000485627	FKBP1B	P68106	108 aa		10.78	□□□□□ -0.68
CTSA-208	ENST00000485627	IRX3	P78415	501 aa	Predicted RBP	10.78	□□□□□ -0.68
CTSA-208	ENST00000485627	ARHGAP4	P98171	946 aa		10.78	□□□□□ -0.68
CTSA-208	ENST00000485627	PABPC4	Q13310	644 aa	Known RBP eCLIP	10.78	□□□□□ -0.68
CTSA-208	ENST00000485627	PPIL2	Q13356	520 aa		10.78	□□□□□ -0.68
CTSA-208	ENST00000485627	PRPF38B	Q5VTL8	546 aa	Known RBP	10.78	□□□□□ -0.68
CTSA-208	ENST00000485627	MOXD1	Q6UVY6	613 aa		10.78	□□□□□ -0.68
CTSA-208	ENST00000485627	KRBA2	Q6ZNG9	492 aa		10.78	□□□□□ -0.68
CTSA-208	ENST00000485627	FASTKD5	Q7L8L6	764 aa	Known RBP	10.78	□□□□□ -0.68
CTSA-208	ENST00000485627	GAS2L3	Q86XJ1	694 aa		10.78	□□□□□ -0.68
CTSA-208	ENST00000485627	PDILT	Q8N807	584 aa		10.78	□□□□□ -0.68
CTSA-208	ENST00000485627	C2orf69	Q8N8R5	385 aa		10.78	□□□□□ -0.68
CTSA-208	ENST00000485627	PROCA1	Q8NCQ7	364 aa	Predicted RBP	10.78	□□□□□ -0.68
CTSA-208	ENST00000485627	ANP32B	Q92688	251 aa	Known RBP	10.78	□□□□□ -0.68
CTSA-208	ENST00000485627	OPTN	Q96CV9	577 aa		10.78	□□□□□ -0.68
CTSA-208	ENST00000485627	EPSTI1	Q96J88	318 aa		10.78	□□□□□ -0.68
CTSA-208	ENST00000485627	CLMN	Q96JQ2	1002 aa		10.78	□□□□□ -0.68
CTSA-208	ENST00000485627	AK8	Q96MA6	479 aa		10.78	□□□□□ -0.68
CTSA-208	ENST00000485627	PANK2	Q9BZ23	570 aa		10.78	□□□□□ -0.68
CTSA-208	ENST00000485627	TMEM60	Q9H2L4	133 aa		10.78	□□□□□ -0.68
CTSA-208	ENST00000485627	GRPEL1	Q9HAV7	217 aa		10.78	□□□□□ -0.68
CTSA-208	ENST00000485627	CCDC39	Q9UFE4	941 aa		10.78	□□□□□ -0.68
CTSA-208	ENST00000485627	RABGAP1	Q9Y3P9	1069 aa		10.78	□□□□□ -0.68
CTSA-208	ENST00000485627	ZNF536	O15090	1300 aa		10.78	□□□□□ -0.68
CTSA-208	ENST00000485627		A0A0G2JLL6	359 aa	Predicted RBP	10.77	□□□□□ -0.69
CTSA-208	ENST00000485627	IRF6	O14896	467 aa		10.77	□□□□□ -0.69
CTSA-208	ENST00000485627	GTPBP6	O43824	516 aa	Predicted RBP	10.77	□□□□□ -0.69
CTSA-208	ENST00000485627	TDP2	O95551	362 aa		10.77	□□□□□ -0.69
CTSA-208	ENST00000485627	SREBF1	P36956	1147 aa		10.77	□□□□□ -0.69
CTSA-208	ENST00000485627	TXK	P42681	527 aa		10.77	□□□□□ -0.69
CTSA-208	ENST00000485627	TYRO3	Q06418	890 aa		10.77	□□□□□ -0.69
CTSA-208	ENST00000485627	PLS1	Q14651	629 aa		10.77	□□□□□ -0.69
CTSA-208	ENST00000485627	TKFC	Q3LXA3	575 aa		10.77	□□□□□ -0.69
CTSA-208	ENST00000485627	SNRNP48	Q6IEG0	339 aa	Known RBP	10.77	□□□□□ -0.69
CTSA-208	ENST00000485627	RBM43	Q6ZSC3	357 aa	Known RBP	10.77	□□□□□ -0.69
CTSA-208	ENST00000485627	PRRT2	Q7Z6L0	340 aa	Predicted RBP	10.77	□□□□□ -0.69
CTSA-208	ENST00000485627	ELOA2	Q8IYF1	753 aa	Predicted RBP	10.77	□□□□□ -0.69
CTSA-208	ENST00000485627	IQUB	Q8NA54	791 aa		10.77	□□□□□ -0.69
CTSA-208	ENST00000485627	DHX58	Q96C10	678 aa		10.77	□□□□□ -0.69
CTSA-208	ENST00000485627	TRERF1	Q96PN7	1200 aa		10.77	□□□□□ -0.69
CTSA-208	ENST00000485627	HOMER2	Q9NSB8	354 aa		10.77	□□□□□ -0.69
CTSA-208	ENST00000485627	MAP3K20	Q9NYL2	800 aa	Known RBP	10.77	□□□□□ -0.69
CTSA-208	ENST00000485627	KCNH4	Q9UQ05	1017 aa		10.77	□□□□□ -0.69
CTSA-208	ENST00000485627	CYP3A7-CYP3A51P	A0A087WV96	503 aa		10.76	□□□□□ -0.69
CTSA-208	ENST00000485627	ZFP91-CNTF	A0A0A6YYC7	529 aa	Predicted RBP	10.76	□□□□□ -0.69
CTSA-208	ENST00000485627	OPLAH	O14841	1288 aa		10.76	□□□□□ -0.69
CTSA-208	ENST00000485627	SLC37A4	O43826	429 aa		10.76	□□□□□ -0.69
CTSA-208	ENST00000485627	CYP3A4	P08684	503 aa		10.76	□□□□□ -0.69
CTSA-208	ENST00000485627	OSBP	P22059	807 aa		10.76	□□□□□ -0.69
CTSA-208	ENST00000485627	CYP3A7	P24462	503 aa		10.76	□□□□□ -0.69
CTSA-208	ENST00000485627	TEC	P42680	631 aa		10.76	□□□□□ -0.69

Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms