RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 SLC26A8Q96RN1 970 aa9.02□□□□□ -0.97
USP40-213ENST00000483216 GPR27Q9NS67 375 aa9.02□□□□□ -0.97
USP40-213ENST00000483216 USP35Q9P2H5 1018 aa9.02□□□□□ -0.97
USP40-213ENST00000483216 RAB3GAP1Q15042 981 aa9.01□□□□□ -0.97
USP40-213ENST00000483216 NTRK3Q16288 839 aa9.01□□□□□ -0.97
USP40-213ENST00000483216 C2orf27AQ580R0 203 aa9.01□□□□□ -0.97
USP40-213ENST00000483216 OLFML2BQ68BL8 750 aa9.01□□□□□ -0.97
USP40-213ENST00000483216 USP53Q70EK8 1073 aa9.01□□□□□ -0.97
USP40-213ENST00000483216 DHRS4Q9BTZ2 278 aa9.01□□□□□ -0.97
USP40-213ENST00000483216 FBLN5Q9UBX5 448 aa9.01□□□□□ -0.97
USP40-213ENST00000483216 NUDT19A8MXV4 375 aa9□□□□□ -0.97
USP40-213ENST00000483216 FUCA1P04066 466 aa9□□□□□ -0.97
USP40-213ENST00000483216 LCP1P13796 627 aa9□□□□□ -0.97
USP40-213ENST00000483216 SUMO1P63165 101 aaKnown RBP9□□□□□ -0.97
USP40-213ENST00000483216 FAM209AQ5JX71 171 aa9□□□□□ -0.97
USP40-213ENST00000483216 RPTNQ6XPR3 784 aa9□□□□□ -0.97
USP40-213ENST00000483216 Q8N1Y9 231 aa9□□□□□ -0.97
USP40-213ENST00000483216 USP33Q8TEY7 942 aa9□□□□□ -0.97
USP40-213ENST00000483216 EXOC2Q96KP1 924 aa9□□□□□ -0.97
USP40-213ENST00000483216 ZFYVE21Q9BQ24 234 aa9□□□□□ -0.97
USP40-213ENST00000483216 PIF1Q9H611 641 aa9□□□□□ -0.97
USP40-213ENST00000483216 MARCH2Q9P0N8 246 aa9□□□□□ -0.97
USP40-213ENST00000483216 MYOCOSA0A1B0GUC4 107 aa8.99□□□□□ -0.97
USP40-213ENST00000483216 BCL6P41182 706 aa8.99□□□□□ -0.97
USP40-213ENST00000483216 MAPKAPK2P49137 400 aa8.99□□□□□ -0.97
USP40-213ENST00000483216 LSAMPQ13449 338 aa8.99□□□□□ -0.97
USP40-213ENST00000483216 STYK1Q6J9G0 422 aa8.99□□□□□ -0.97
USP40-213ENST00000483216 NETO2Q8NC67 525 aa8.99□□□□□ -0.97
USP40-213ENST00000483216 ZSWIM2Q8NEG5 633 aa8.99□□□□□ -0.97
USP40-213ENST00000483216 KISS1RQ969F8 398 aaPredicted RBP8.99□□□□□ -0.97
USP40-213ENST00000483216 PHF20Q9BVI0 1012 aa8.99□□□□□ -0.97
USP40-213ENST00000483216 MCOLN1Q9GZU1 580 aa8.99□□□□□ -0.97
USP40-213ENST00000483216 KCNK12Q9HB15 430 aa8.99□□□□□ -0.97
USP40-213ENST00000483216 PCDHA2Q9Y5H9 948 aa8.99□□□□□ -0.97
USP40-213ENST00000483216 CCDC163A0A0D9SF12 145 aa8.98□□□□□ -0.97
USP40-213ENST00000483216 VIPR1P32241 457 aa8.98□□□□□ -0.97
USP40-213ENST00000483216 NLRP10Q86W26 655 aa8.98□□□□□ -0.97
USP40-213ENST00000483216 RIOX2Q8IUF8 465 aa8.98□□□□□ -0.97
USP40-213ENST00000483216 TEX2Q8IWB9 1127 aa8.98□□□□□ -0.97
USP40-213ENST00000483216 BHLHE22Q8NFJ8 381 aaPredicted RBP8.98□□□□□ -0.97
USP40-213ENST00000483216 BTG4Q9NY30 223 aa8.98□□□□□ -0.97
USP40-213ENST00000483216 MRPS23Q9Y3D9 190 aaKnown RBP8.98□□□□□ -0.97
USP40-213ENST00000483216 X6R8D5 127 aa8.98□□□□□ -0.97
USP40-213ENST00000483216 TEX51A0A1B0GUA7 166 aa8.97□□□□□ -0.97
USP40-213ENST00000483216 BLACEA4D250 179 aa8.97□□□□□ -0.97
USP40-213ENST00000483216 C22orf46C9J442 243 aa8.97□□□□□ -0.97
USP40-213ENST00000483216 H7BY64 318 aa8.97□□□□□ -0.97
USP40-213ENST00000483216 SEMA7AO75326 666 aa8.97□□□□□ -0.97
USP40-213ENST00000483216 SRSF3P84103 164 aaKnown RBP8.97□□□□□ -0.97
USP40-213ENST00000483216 WWC2Q6AWC2 1192 aa8.97□□□□□ -0.97
USP40-213ENST00000483216 ZC3H14Q6PJT7 736 aaKnown RBP8.97□□□□□ -0.97
USP40-213ENST00000483216 SYDE1Q6ZW31 735 aaPredicted RBP8.97□□□□□ -0.97
USP40-213ENST00000483216 CEP68Q76N32 757 aa8.97□□□□□ -0.97
USP40-213ENST00000483216 TMEM169Q96HH4 297 aa8.97□□□□□ -0.97
USP40-213ENST00000483216 SLC38A3Q99624 504 aa8.97□□□□□ -0.97
USP40-213ENST00000483216 FBXL7Q9UJT9 491 aa8.97□□□□□ -0.97
USP40-213ENST00000483216 F8W031 263 aaPredicted RBP8.96□□□□□ -0.98
USP40-213ENST00000483216 MSCO60682 206 aa8.96□□□□□ -0.98
USP40-213ENST00000483216 C6orf222P0C671 652 aaPredicted RBP8.96□□□□□ -0.98
USP40-213ENST00000483216 PLEKHN1Q494U1 663 aaPredicted RBP8.96□□□□□ -0.98
USP40-213ENST00000483216 ZNF648Q5T619 568 aaPredicted RBP8.96□□□□□ -0.98
USP40-213ENST00000483216 MROH9Q5TGP6 573 aa8.96□□□□□ -0.98
USP40-213ENST00000483216 KCNT2Q6UVM3 1135 aa8.96□□□□□ -0.98
USP40-213ENST00000483216 MAMDC2Q7Z304 686 aaPredicted RBP8.96□□□□□ -0.98
USP40-213ENST00000483216 PTPRN2Q92932 1015 aa8.96□□□□□ -0.98
USP40-213ENST00000483216 TRMT2BQ96GJ1 504 aaKnown RBP8.96□□□□□ -0.98
USP40-213ENST00000483216 PPP1R16BQ96T49 567 aa8.96□□□□□ -0.98
USP40-213ENST00000483216 NUDT5Q9UKK9 219 aa8.96□□□□□ -0.98
USP40-213ENST00000483216 PTCH2Q9Y6C5 1203 aa8.96□□□□□ -0.98
USP40-213ENST00000483216 ZC3H12DA2A288 527 aaKnown RBP8.95□□□□□ -0.98
USP40-213ENST00000483216 NTRK1P04629 796 aa8.95□□□□□ -0.98
USP40-213ENST00000483216 FPR2P25090 351 aa8.95□□□□□ -0.98
USP40-213ENST00000483216 GPR85P60893 370 aa8.95□□□□□ -0.98
USP40-213ENST00000483216 TMEM132EQ6IEE7 984 aa8.95□□□□□ -0.98
USP40-213ENST00000483216 LBX2Q6XYB7 198 aa8.95□□□□□ -0.98
USP40-213ENST00000483216 IFNL3Q8IZI9 196 aa8.95□□□□□ -0.98
USP40-213ENST00000483216 PUM2Q8TB72 1066 aaKnown RBP eCLIP8.95□□□□□ -0.98
USP40-213ENST00000483216 KCNN1Q92952 543 aa8.95□□□□□ -0.98
USP40-213ENST00000483216 PEX11GQ96HA9 241 aa8.95□□□□□ -0.98
USP40-213ENST00000483216 CHAMP1Q96JM3 812 aa8.95□□□□□ -0.98
USP40-213ENST00000483216 SIRT5Q9NXA8 310 aa8.95□□□□□ -0.98
USP40-213ENST00000483216 MED14OSP0DP75 135 aa8.94□□□□□ -0.98
USP40-213ENST00000483216 GLDCP23378 1020 aa8.94□□□□□ -0.98
USP40-213ENST00000483216 GABREP78334 506 aa8.94□□□□□ -0.98
USP40-213ENST00000483216 TMC6Q7Z403 805 aa8.94□□□□□ -0.98
USP40-213ENST00000483216 TSPAN17Q96FV3 270 aa8.94□□□□□ -0.98
USP40-213ENST00000483216 KRTAP4-8Q9BYQ9 185 aa8.94□□□□□ -0.98
USP40-213ENST00000483216 CDIP1Q9H305 208 aa8.94□□□□□ -0.98
USP40-213ENST00000483216 CLDND1Q9NY35 253 aa8.94□□□□□ -0.98
USP40-213ENST00000483216 MBD1Q9UIS9 605 aaPredicted RBP8.94□□□□□ -0.98
USP40-213ENST00000483216 DBR1Q9UK59 544 aaKnown RBP8.94□□□□□ -0.98
USP40-213ENST00000483216 ASXL2Q76L83 1435 aa8.94□□□□□ -0.98
USP40-213ENST00000483216 AQP7O14520 342 aa8.93□□□□□ -0.98
USP40-213ENST00000483216 ZBTB7AO95365 584 aa8.93□□□□□ -0.98
USP40-213ENST00000483216 KRT1P04264 644 aa8.93□□□□□ -0.98
USP40-213ENST00000483216 TMEM253P0C7T8 217 aa8.93□□□□□ -0.98
USP40-213ENST00000483216 SLC6A11P48066 632 aa8.93□□□□□ -0.98
USP40-213ENST00000483216 PRR5P85299 388 aa8.93□□□□□ -0.98
USP40-213ENST00000483216 SLC9A5Q14940 896 aa8.93□□□□□ -0.98
USP40-213ENST00000483216 KIZQ2M2Z5 673 aa8.93□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms