RNA–Protein interactions for RNA: ENST00000478746.1

VIM-204, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 757 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-204ENST00000478746 TRIP12Q14669 1992 aaPredicted RBP20.29■□□□□ 0.84
VIM-204ENST00000478746 CALML3P27482 149 aa20.29■□□□□ 0.84
VIM-204ENST00000478746 TTBK2Q6IQ55 1244 aa20.29■□□□□ 0.84
VIM-204ENST00000478746 CCDC155Q8N6L0 562 aa20.29■□□□□ 0.84
VIM-204ENST00000478746 SCFD2Q8WU76 684 aa20.29■□□□□ 0.84
VIM-204ENST00000478746 COPS5Q92905 334 aa20.29■□□□□ 0.84
VIM-204ENST00000478746 MPHOSPH6Q99547 160 aaKnown RBP20.29■□□□□ 0.84
VIM-204ENST00000478746 LCHNA4D1U4 455 aa20.28■□□□□ 0.84
VIM-204ENST00000478746 CTDSPL2Q05D32 466 aa20.28■□□□□ 0.84
VIM-204ENST00000478746 PTGISQ16647 500 aa20.28■□□□□ 0.84
VIM-204ENST00000478746 SYDE2Q5VT97 1194 aa20.28■□□□□ 0.84
VIM-204ENST00000478746 BTNL9Q6UXG8 535 aa20.28■□□□□ 0.84
VIM-204ENST00000478746 CD320Q9NPF0 282 aa20.28■□□□□ 0.84
VIM-204ENST00000478746 DDX52Q9Y2R4 599 aaKnown RBP eCLIP20.28■□□□□ 0.84
VIM-204ENST00000478746 BRWD1Q9NSI6 2320 aa20.27■□□□□ 0.84
VIM-204ENST00000478746 RANBP6O60518 1105 aaKnown RBP20.27■□□□□ 0.84
VIM-204ENST00000478746 TXNP10599 105 aaKnown RBP20.27■□□□□ 0.84
VIM-204ENST00000478746 WDR5P61964 334 aaKnown RBP20.27■□□□□ 0.84
VIM-204ENST00000478746 SLC30A10Q6XR72 485 aa20.27■□□□□ 0.84
VIM-204ENST00000478746 RNF207Q6ZRF8 634 aa20.27■□□□□ 0.84
VIM-204ENST00000478746 TMCO2Q7Z6W1 182 aaPredicted RBP20.27■□□□□ 0.84
VIM-204ENST00000478746 CAGE1Q8TC20 777 aa20.27■□□□□ 0.84
VIM-204ENST00000478746 AFAP1L1Q8TED9 768 aa20.27■□□□□ 0.84
VIM-204ENST00000478746 GDPD5Q8WTR4 605 aa20.27■□□□□ 0.84
VIM-204ENST00000478746 B4DLN1 442 aa20.26■□□□□ 0.83
VIM-204ENST00000478746 MRPL12P52815 198 aaKnown RBP20.26■□□□□ 0.83
VIM-204ENST00000478746 CLEC4DQ8WXI8 215 aa20.26■□□□□ 0.83
VIM-204ENST00000478746 SUGCTQ9HAC7 445 aa20.26■□□□□ 0.83
VIM-204ENST00000478746 GPCPD1Q9NPB8 672 aa20.26■□□□□ 0.83
VIM-204ENST00000478746 MUC6Q6W4X9 2439 aa20.26■□□□□ 0.83
VIM-204ENST00000478746 PIEZO1Q92508 2521 aa20.25■□□□□ 0.83
VIM-204ENST00000478746 TANC1Q9C0D5 1861 aa20.25■□□□□ 0.83
VIM-204ENST00000478746 NOVP48745 357 aa20.25■□□□□ 0.83
VIM-204ENST00000478746 GPNMBQ14956 572 aa20.25■□□□□ 0.83
VIM-204ENST00000478746 ZMYM1Q5SVZ6 1142 aa20.25■□□□□ 0.83
VIM-204ENST00000478746 DNERQ8NFT8 737 aa20.25■□□□□ 0.83
VIM-204ENST00000478746 RAD9AQ99638 391 aa20.25■□□□□ 0.83
VIM-204ENST00000478746 UBE2ZQ9H832 354 aaPredicted RBP20.25■□□□□ 0.83
VIM-204ENST00000478746 PNMA2Q9UL42 364 aa20.25■□□□□ 0.83
VIM-204ENST00000478746 MTUS1Q9ULD2 1270 aa20.25■□□□□ 0.83
VIM-204ENST00000478746 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP20.24■□□□□ 0.83
VIM-204ENST00000478746 PARNO95453 639 aaKnown RBP20.24■□□□□ 0.83
VIM-204ENST00000478746 SELPP16109 830 aa20.24■□□□□ 0.83
VIM-204ENST00000478746 EDNRBP24530 442 aa20.24■□□□□ 0.83
VIM-204ENST00000478746 ERVK-21P61565 698 aa20.24■□□□□ 0.83
VIM-204ENST00000478746 RPS6P62753 249 aaKnown RBP20.24■□□□□ 0.83
VIM-204ENST00000478746 DEFB103AP81534 67 aa20.24■□□□□ 0.83
VIM-204ENST00000478746 GDF6Q6KF10 455 aaPredicted RBP20.24■□□□□ 0.83
VIM-204ENST00000478746 CNKSR3Q6P9H4 555 aa20.24■□□□□ 0.83
VIM-204ENST00000478746 ALYREFQ86V81 257 aaKnown RBP20.24■□□□□ 0.83
VIM-204ENST00000478746 GJD3Q8N144 294 aa20.24■□□□□ 0.83
VIM-204ENST00000478746 TGS1Q96RS0 853 aaKnown RBP20.24■□□□□ 0.83
VIM-204ENST00000478746 FSD1Q9BTV5 496 aa20.24■□□□□ 0.83
VIM-204ENST00000478746 DCTPP1Q9H773 170 aa20.24■□□□□ 0.83
VIM-204ENST00000478746 FRMPD2Q68DX3 1309 aaPredicted RBP20.24■□□□□ 0.83
VIM-204ENST00000478746 PTPRSQ13332 1948 aa20.23■□□□□ 0.83
VIM-204ENST00000478746 LEXMQ3ZCV2 418 aa20.23■□□□□ 0.83
VIM-204ENST00000478746 LRRC8DQ7L1W4 858 aa20.23■□□□□ 0.83
VIM-204ENST00000478746 FAM178BQ8IXR5 827 aa20.23■□□□□ 0.83
VIM-204ENST00000478746 ABHD14A-ACY1A0A1B0GW23 586 aa20.22■□□□□ 0.83
VIM-204ENST00000478746 PRR33A8MZF0 331 aa20.22■□□□□ 0.83
VIM-204ENST00000478746 ARIH2O95376 493 aa20.22■□□□□ 0.83
VIM-204ENST00000478746 GJB5O95377 273 aa20.22■□□□□ 0.83
VIM-204ENST00000478746 TOP1P11387 765 aaKnown RBP20.22■□□□□ 0.83
VIM-204ENST00000478746 SESTD1Q86VW0 696 aa20.22■□□□□ 0.83
VIM-204ENST00000478746 AFG1LQ8WV93 481 aa20.22■□□□□ 0.83
VIM-204ENST00000478746 CTAGE1Q96RT6 745 aa20.22■□□□□ 0.83
VIM-204ENST00000478746 CRBNQ96SW2 442 aa20.22■□□□□ 0.83
VIM-204ENST00000478746 TMEM47Q9BQJ4 181 aa20.22■□□□□ 0.83
VIM-204ENST00000478746 ANAPC4Q9UJX5 808 aa20.22■□□□□ 0.83
VIM-204ENST00000478746 COL4A4P53420 1690 aaPredicted RBP20.22■□□□□ 0.83
VIM-204ENST00000478746 LINC01553A4QN01 128 aa20.21■□□□□ 0.83
VIM-204ENST00000478746 ORC4O43929 436 aa20.21■□□□□ 0.83
VIM-204ENST00000478746 CXCL10P02778 98 aa20.21■□□□□ 0.83
VIM-204ENST00000478746 KCNA5P22460 613 aa20.21■□□□□ 0.83
VIM-204ENST00000478746 SSTR3P32745 418 aaPredicted RBP20.21■□□□□ 0.83
VIM-204ENST00000478746 IKBKEQ14164 716 aa20.21■□□□□ 0.83
VIM-204ENST00000478746 GADD45GIP1Q8TAE8 222 aaPredicted RBP20.21■□□□□ 0.83
VIM-204ENST00000478746 DHX38Q92620 1227 aaKnown RBP20.21■□□□□ 0.83
VIM-204ENST00000478746 TOMM22Q9NS69 142 aa20.21■□□□□ 0.83
VIM-204ENST00000478746 TTC41PQ6P2S7 1318 aa20.21■□□□□ 0.83
VIM-204ENST00000478746 FOXP2O15409 715 aa20.2■□□□□ 0.82
VIM-204ENST00000478746 NBNO60934 754 aa20.2■□□□□ 0.82
VIM-204ENST00000478746 EFCAB14O75071 495 aa20.2■□□□□ 0.82
VIM-204ENST00000478746 GH1P01241 217 aa20.2■□□□□ 0.82
VIM-204ENST00000478746 MMP3P08254 477 aa20.2■□□□□ 0.82
VIM-204ENST00000478746 CKBP12277 381 aa20.2■□□□□ 0.82
VIM-204ENST00000478746 ALADP13716 330 aa20.2■□□□□ 0.82
VIM-204ENST00000478746 CASTP20810 708 aaKnown RBP20.2■□□□□ 0.82
VIM-204ENST00000478746 LY6KQ17RY6 165 aa20.2■□□□□ 0.82
VIM-204ENST00000478746 CCDC62Q6P9F0 684 aa20.2■□□□□ 0.82
VIM-204ENST00000478746 KAT2BQ92831 832 aa20.2■□□□□ 0.82
VIM-204ENST00000478746 UIMC1Q96RL1 719 aa20.2■□□□□ 0.82
VIM-204ENST00000478746 FGRP09769 529 aa20.19■□□□□ 0.82
VIM-204ENST00000478746 RBL2Q08999 1139 aa20.19■□□□□ 0.82
VIM-204ENST00000478746 TCTN1Q2MV58 587 aa20.19■□□□□ 0.82
VIM-204ENST00000478746 RRP12Q5JTH9 1297 aaKnown RBP20.19■□□□□ 0.82
VIM-204ENST00000478746 FAM117BQ6P1L5 589 aa20.19■□□□□ 0.82
VIM-204ENST00000478746 SEPT14Q6ZU15 432 aa20.19■□□□□ 0.82
VIM-204ENST00000478746 CHST3Q7LGC8 479 aa20.19■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms