RNA–Protein interactions for RNA: ENST00000477970.1

PTPRF-212, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 3,321 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-212ENST00000477970 ZNF622Q969S3 477 aaKnown RBP eCLIP13.68□□□□□ -0.22
PTPRF-212ENST00000477970 MXD3Q9BW11 206 aa13.68□□□□□ -0.22
PTPRF-212ENST00000477970 GPCPD1Q9NPB8 672 aa13.68□□□□□ -0.22
PTPRF-212ENST00000477970 FAM198AQ9UFP1 575 aa13.68□□□□□ -0.22
PTPRF-212ENST00000477970 EHHADHQ08426 723 aa13.67□□□□□ -0.22
PTPRF-212ENST00000477970 NFIAQ12857 509 aa13.67□□□□□ -0.22
PTPRF-212ENST00000477970 ZSCAN29Q8IWY8 852 aaPredicted RBP13.67□□□□□ -0.22
PTPRF-212ENST00000477970 DNAJC7Q99615 494 aa13.67□□□□□ -0.22
PTPRF-212ENST00000477970 NUP58Q9BVL2 599 aa13.67□□□□□ -0.22
PTPRF-212ENST00000477970 MYO1AQ9UBC5 1043 aa13.67□□□□□ -0.22
PTPRF-212ENST00000477970 SLC37A4O43826 429 aa13.67□□□□□ -0.22
PTPRF-212ENST00000477970 ECE2O60344 883 aa13.67□□□□□ -0.22
PTPRF-212ENST00000477970 CASQ1P31415 396 aa13.67□□□□□ -0.22
PTPRF-212ENST00000477970 CCT6AP40227 531 aaKnown RBP13.67□□□□□ -0.22
PTPRF-212ENST00000477970 USP11P51784 963 aa13.67□□□□□ -0.22
PTPRF-212ENST00000477970 PMS1P54277 932 aaKnown RBP13.67□□□□□ -0.22
PTPRF-212ENST00000477970 FIGNQ5HY92 759 aa13.67□□□□□ -0.22
PTPRF-212ENST00000477970 ZNF662Q6ZS27 426 aa13.67□□□□□ -0.22
PTPRF-212ENST00000477970 TMEM179Q6ZVK1 233 aa13.67□□□□□ -0.22
PTPRF-212ENST00000477970 SUPT20HQ8NEM7 779 aa13.67□□□□□ -0.22
PTPRF-212ENST00000477970 GMCL1Q96IK5 515 aa13.67□□□□□ -0.22
PTPRF-212ENST00000477970 TAB2Q9NYJ8 693 aa13.67□□□□□ -0.22
PTPRF-212ENST00000477970 SOWAHDA6NJG2 315 aa13.67□□□□□ -0.22
PTPRF-212ENST00000477970 PDE4DQ08499 809 aa13.67□□□□□ -0.22
PTPRF-212ENST00000477970 AP3B2Q13367 1082 aa13.67□□□□□ -0.22
PTPRF-212ENST00000477970 CENPPQ6IPU0 288 aa13.67□□□□□ -0.22
PTPRF-212ENST00000477970 RAD54LQ92698 747 aa13.67□□□□□ -0.22
PTPRF-212ENST00000477970 MAGEC2Q9UBF1 373 aaPredicted RBP13.67□□□□□ -0.22
PTPRF-212ENST00000477970 CAPN11Q9UMQ6 739 aa13.67□□□□□ -0.22
PTPRF-212ENST00000477970 KDM3AQ9Y4C1 1321 aa13.66□□□□□ -0.22
PTPRF-212ENST00000477970 EFCAB8A8MWE9 144 aa13.66□□□□□ -0.22
PTPRF-212ENST00000477970 MMP14P50281 582 aa13.66□□□□□ -0.22
PTPRF-212ENST00000477970 LARP4BQ92615 738 aaKnown RBP13.66□□□□□ -0.22
PTPRF-212ENST00000477970 TRIM47Q96LD4 638 aa13.66□□□□□ -0.22
PTPRF-212ENST00000477970 VPS33BQ9H267 617 aa13.66□□□□□ -0.22
PTPRF-212ENST00000477970 VPS16Q9H269 839 aa13.66□□□□□ -0.22
PTPRF-212ENST00000477970 MRFAP1Q9Y605 127 aa13.66□□□□□ -0.22
PTPRF-212ENST00000477970 TRIM49BA6NDI0 452 aa13.66□□□□□ -0.22
PTPRF-212ENST00000477970 NFKBIEO00221 500 aa13.66□□□□□ -0.22
PTPRF-212ENST00000477970 H2AFXP16104 143 aaPredicted RBP13.66□□□□□ -0.22
PTPRF-212ENST00000477970 ASIC1P78348 528 aa13.66□□□□□ -0.22
PTPRF-212ENST00000477970 CERKLQ49MI3 558 aaPredicted RBP13.66□□□□□ -0.22
PTPRF-212ENST00000477970 ARHGAP27Q6ZUM4 889 aa13.66□□□□□ -0.22
PTPRF-212ENST00000477970 RTKN2Q8IZC4 609 aa13.66□□□□□ -0.22
PTPRF-212ENST00000477970 MRPL44Q9H9J2 332 aaKnown RBP13.66□□□□□ -0.22
PTPRF-212ENST00000477970 A0A1W2PQJ5 194 aa13.66□□□□□ -0.22
PTPRF-212ENST00000477970 TDP2O95551 362 aa13.66□□□□□ -0.22
PTPRF-212ENST00000477970 TXKP42681 527 aa13.66□□□□□ -0.22
PTPRF-212ENST00000477970 UBXN1Q04323 297 aa13.66□□□□□ -0.22
PTPRF-212ENST00000477970 KRT79Q5XKE5 535 aa13.66□□□□□ -0.22
PTPRF-212ENST00000477970 SH3BP5LQ7L8J4 393 aa13.66□□□□□ -0.22
PTPRF-212ENST00000477970 GUF1Q8N442 669 aaKnown RBP13.66□□□□□ -0.22
PTPRF-212ENST00000477970 PSMD1Q99460 953 aa13.66□□□□□ -0.22
PTPRF-212ENST00000477970 TTYH3Q9C0H2 523 aa13.66□□□□□ -0.22
PTPRF-212ENST00000477970 PSTPIP2Q9H939 334 aa13.66□□□□□ -0.22
PTPRF-212ENST00000477970 SCN4AP35499 1836 aa13.65□□□□□ -0.22
PTPRF-212ENST00000477970 USP17L10C9JJH3 530 aa13.65□□□□□ -0.22
PTPRF-212ENST00000477970 TADA3O75528 432 aa13.65□□□□□ -0.22
PTPRF-212ENST00000477970 TTBK2Q6IQ55 1244 aa13.65□□□□□ -0.22
PTPRF-212ENST00000477970 CRYGNQ8WXF5 182 aa13.65□□□□□ -0.22
PTPRF-212ENST00000477970 HAS1Q92839 578 aa13.65□□□□□ -0.22
PTPRF-212ENST00000477970 DBNDD1Q9H9R9 158 aa13.65□□□□□ -0.22
PTPRF-212ENST00000477970 DDX25Q9UHL0 483 aaKnown RBP13.65□□□□□ -0.22
PTPRF-212ENST00000477970 STK24Q9Y6E0 443 aa13.65□□□□□ -0.22
PTPRF-212ENST00000477970 STK4Q13043 487 aa13.65□□□□□ -0.22
PTPRF-212ENST00000477970 MEA1Q16626 185 aa13.65□□□□□ -0.22
PTPRF-212ENST00000477970 CCDC96Q2M329 555 aa13.65□□□□□ -0.22
PTPRF-212ENST00000477970 BTNL9Q6UXG8 535 aa13.65□□□□□ -0.22
PTPRF-212ENST00000477970 ZFPM1Q8IX07 1006 aa13.65□□□□□ -0.22
PTPRF-212ENST00000477970 CSGALNACT2Q8N6G5 542 aa13.65□□□□□ -0.22
PTPRF-212ENST00000477970 KIAA0895Q8NCT3 520 aa13.65□□□□□ -0.22
PTPRF-212ENST00000477970 ERGIC2Q96RQ1 377 aa13.65□□□□□ -0.22
PTPRF-212ENST00000477970 NT5C3AQ9H0P0 336 aa13.65□□□□□ -0.22
PTPRF-212ENST00000477970 FAM53CQ9NYF3 392 aa13.65□□□□□ -0.22
PTPRF-212ENST00000477970 ATAD5Q96QE3 1844 aa13.64□□□□□ -0.23
PTPRF-212ENST00000477970 DDTLA6NHG4 134 aaPredicted RBP13.64□□□□□ -0.23
PTPRF-212ENST00000477970 FGFR1OPO95684 399 aaKnown RBP13.64□□□□□ -0.23
PTPRF-212ENST00000477970 EEF2P13639 858 aaKnown RBP13.64□□□□□ -0.23
PTPRF-212ENST00000477970 LMNB1P20700 586 aa13.64□□□□□ -0.23
PTPRF-212ENST00000477970 EIF6P56537 245 aaKnown RBP13.64□□□□□ -0.23
PTPRF-212ENST00000477970 GNG11P61952 73 aa13.64□□□□□ -0.23
PTPRF-212ENST00000477970 ERVK-24P63145 666 aa13.64□□□□□ -0.23
PTPRF-212ENST00000477970 TUBB4BP68371 445 aa13.64□□□□□ -0.23
PTPRF-212ENST00000477970 CDK17Q00537 523 aa13.64□□□□□ -0.23
PTPRF-212ENST00000477970 LRRC63Q05C16 580 aa13.64□□□□□ -0.23
PTPRF-212ENST00000477970 MTF1Q14872 753 aa13.64□□□□□ -0.23
PTPRF-212ENST00000477970 CLEC10AQ8IUN9 316 aa13.64□□□□□ -0.23
PTPRF-212ENST00000477970 WDR24Q96S15 920 aa13.64□□□□□ -0.23
PTPRF-212ENST00000477970 KCNMB3Q9NPA1 279 aa13.64□□□□□ -0.23
PTPRF-212ENST00000477970 OGFRQ9NZT2 677 aa13.64□□□□□ -0.23
PTPRF-212ENST00000477970 MYMKA6NI61 221 aa13.64□□□□□ -0.23
PTPRF-212ENST00000477970 MPHOSPH10O00566 681 aaKnown RBP13.64□□□□□ -0.23
PTPRF-212ENST00000477970 TBX3O15119 743 aa13.64□□□□□ -0.23
PTPRF-212ENST00000477970 NAA30Q147X3 362 aaPredicted RBP13.64□□□□□ -0.23
PTPRF-212ENST00000477970 ELF2Q15723 593 aa13.64□□□□□ -0.23
PTPRF-212ENST00000477970 ANKRD40Q6AI12 368 aa13.64□□□□□ -0.23
PTPRF-212ENST00000477970 SIAH1Q8IUQ4 282 aa13.64□□□□□ -0.23
PTPRF-212ENST00000477970 OR8K1Q8NGG5 319 aa13.64□□□□□ -0.23
PTPRF-212ENST00000477970 NUP88Q99567 741 aaPredicted RBP13.64□□□□□ -0.23
PTPRF-212ENST00000477970 TUBGCP2Q9BSJ2 902 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 62 ms