RNA–Protein interactions for RNA: ENST00000477836.1

SMARCB1-206, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 2

Gene SMARCB1, Length 660 nt, Biotype processed transcript, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-206ENST00000477836 PRR23AA6NEV1 266 aa11.6□□□□□ -0.55
SMARCB1-206ENST00000477836 IPO8O15397 1037 aaKnown RBP11.6□□□□□ -0.55
SMARCB1-206ENST00000477836 NCK2O43639 380 aa11.6□□□□□ -0.55
SMARCB1-206ENST00000477836 EFCAB14O75071 495 aa11.6□□□□□ -0.55
SMARCB1-206ENST00000477836 SURF6O75683 361 aaKnown RBP11.6□□□□□ -0.55
SMARCB1-206ENST00000477836 RGS20O76081 388 aa11.6□□□□□ -0.55
SMARCB1-206ENST00000477836 CXCL10P02778 98 aa11.6□□□□□ -0.55
SMARCB1-206ENST00000477836 AVPR2P30518 371 aa11.6□□□□□ -0.55
SMARCB1-206ENST00000477836 BRDTQ58F21 947 aaPredicted RBP11.6□□□□□ -0.55
SMARCB1-206ENST00000477836 LIN28BQ6ZN17 250 aaKnown RBP eCLIP11.6□□□□□ -0.55
SMARCB1-206ENST00000477836 FTSJ3Q8IY81 847 aaKnown RBP11.6□□□□□ -0.55
SMARCB1-206ENST00000477836 EAF2Q96CJ1 260 aaPredicted RBP11.6□□□□□ -0.55
SMARCB1-206ENST00000477836 SAMD11Q96NU1 681 aa11.6□□□□□ -0.55
SMARCB1-206ENST00000477836 FSD1Q9BTV5 496 aa11.6□□□□□ -0.55
SMARCB1-206ENST00000477836 ATP8A2Q9NTI2 1148 aa11.6□□□□□ -0.55
SMARCB1-206ENST00000477836 KDM4AO75164 1064 aa11.59□□□□□ -0.55
SMARCB1-206ENST00000477836 PARNO95453 639 aaKnown RBP11.59□□□□□ -0.55
SMARCB1-206ENST00000477836 MS4A1P11836 297 aa11.59□□□□□ -0.55
SMARCB1-206ENST00000477836 MKRN4PQ13434 485 aaPredicted RBP11.59□□□□□ -0.55
SMARCB1-206ENST00000477836 SMAD4Q13485 552 aaKnown RBP11.59□□□□□ -0.55
SMARCB1-206ENST00000477836 TTF1Q15361 905 aaPredicted RBP11.59□□□□□ -0.55
SMARCB1-206ENST00000477836 CTC1Q2NKJ3 1217 aa11.59□□□□□ -0.55
SMARCB1-206ENST00000477836 MYOCDQ8IZQ8 938 aa11.59□□□□□ -0.55
SMARCB1-206ENST00000477836 TRERF1Q96PN7 1200 aa11.59□□□□□ -0.55
SMARCB1-206ENST00000477836 PURBQ96QR8 312 aaKnown RBP11.59□□□□□ -0.55
SMARCB1-206ENST00000477836 NYAP2Q9P242 653 aa11.59□□□□□ -0.55
SMARCB1-206ENST00000477836 CLIP2Q9UDT6 1046 aa11.59□□□□□ -0.55
SMARCB1-206ENST00000477836 RAD50Q92878 1312 aa11.59□□□□□ -0.55
SMARCB1-206ENST00000477836 CACNA1HO95180 2353 aa11.59□□□□□ -0.55
SMARCB1-206ENST00000477836 TCRBV5S4A2TA0A5A2 114 aa11.58□□□□□ -0.56
SMARCB1-206ENST00000477836 KPNA6O60684 536 aa11.58□□□□□ -0.56
SMARCB1-206ENST00000477836 AMHP03971 560 aa11.58□□□□□ -0.56
SMARCB1-206ENST00000477836 CKBP12277 381 aa11.58□□□□□ -0.56
SMARCB1-206ENST00000477836 ALAS1P13196 640 aa11.58□□□□□ -0.56
SMARCB1-206ENST00000477836 HTRA4P83105 476 aaPredicted RBP11.58□□□□□ -0.56
SMARCB1-206ENST00000477836 SIGLEC14Q08ET2 396 aa11.58□□□□□ -0.56
SMARCB1-206ENST00000477836 POLA2Q14181 598 aa11.58□□□□□ -0.56
SMARCB1-206ENST00000477836 ERICH6BQ5W0A0 696 aa11.58□□□□□ -0.56
SMARCB1-206ENST00000477836 GDF6Q6KF10 455 aaPredicted RBP11.58□□□□□ -0.56
SMARCB1-206ENST00000477836 TMEM192Q8IY95 271 aa11.58□□□□□ -0.56
SMARCB1-206ENST00000477836 SP7Q8TDD2 431 aaPredicted RBP11.58□□□□□ -0.56
SMARCB1-206ENST00000477836 DHX38Q92620 1227 aaKnown RBP11.58□□□□□ -0.56
SMARCB1-206ENST00000477836 CTAGE1Q96RT6 745 aa11.58□□□□□ -0.56
SMARCB1-206ENST00000477836 IGFLR1Q9H665 355 aa11.58□□□□□ -0.56
SMARCB1-206ENST00000477836 CYP39A1Q9NYL5 469 aa11.58□□□□□ -0.56
SMARCB1-206ENST00000477836 CD207Q9UJ71 328 aa11.58□□□□□ -0.56
SMARCB1-206ENST00000477836 ISY1Q9ULR0 285 aaKnown RBP11.58□□□□□ -0.56
SMARCB1-206ENST00000477836 GREB1LQ9C091 1923 aaPredicted RBP11.57□□□□□ -0.56
SMARCB1-206ENST00000477836 MED19A0JLT2 244 aaPredicted RBP11.57□□□□□ -0.56
SMARCB1-206ENST00000477836 TBX10O75333 385 aa11.57□□□□□ -0.56
SMARCB1-206ENST00000477836 MBD4O95243 580 aa11.57□□□□□ -0.56
SMARCB1-206ENST00000477836 FDX1P10109 184 aa11.57□□□□□ -0.56
SMARCB1-206ENST00000477836 TRIM27P14373 513 aa11.57□□□□□ -0.56
SMARCB1-206ENST00000477836 HYAL1Q12794 435 aa11.57□□□□□ -0.56
SMARCB1-206ENST00000477836 TKFCQ3LXA3 575 aa11.57□□□□□ -0.56
SMARCB1-206ENST00000477836 MUM1L1Q5H9M0 696 aa11.57□□□□□ -0.56
SMARCB1-206ENST00000477836 C20orf194Q5TEA3 1177 aa11.57□□□□□ -0.56
SMARCB1-206ENST00000477836 NSMFQ6X4W1 530 aa11.57□□□□□ -0.56
SMARCB1-206ENST00000477836 FBXO11Q86XK2 927 aa11.57□□□□□ -0.56
SMARCB1-206ENST00000477836 STK11IPQ8N1F8 1099 aa11.57□□□□□ -0.56
SMARCB1-206ENST00000477836 MORC4Q8TE76 937 aa11.57□□□□□ -0.56
SMARCB1-206ENST00000477836 ARHGAP45Q92619 1136 aa11.57□□□□□ -0.56
SMARCB1-206ENST00000477836 ASIC4Q96FT7 647 aa11.57□□□□□ -0.56
SMARCB1-206ENST00000477836 DDRGK1Q96HY6 314 aa11.57□□□□□ -0.56
SMARCB1-206ENST00000477836 CACNA1BQ00975 2339 aa11.57□□□□□ -0.56
SMARCB1-206ENST00000477836 MYH4Q9Y623 1939 aa11.56□□□□□ -0.56
SMARCB1-206ENST00000477836 A6NJR5 290 aa11.56□□□□□ -0.56
SMARCB1-206ENST00000477836 LOC730098B7Z3J9 87 aa11.56□□□□□ -0.56
SMARCB1-206ENST00000477836 TMEM232C9JQI7 657 aa11.56□□□□□ -0.56
SMARCB1-206ENST00000477836 LINC01565O15544 149 aa11.56□□□□□ -0.56
SMARCB1-206ENST00000477836 GTF2F1P35269 517 aaKnown RBP eCLIP11.56□□□□□ -0.56
SMARCB1-206ENST00000477836 NBL1P41271 181 aa11.56□□□□□ -0.56
SMARCB1-206ENST00000477836 IKQ13123 557 aaPredicted RBP11.56□□□□□ -0.56
SMARCB1-206ENST00000477836 PPP2R5BQ15173 497 aa11.56□□□□□ -0.56
SMARCB1-206ENST00000477836 SLFNL1Q499Z3 407 aa11.56□□□□□ -0.56
SMARCB1-206ENST00000477836 RIF1Q5UIP0 2472 aaKnown RBP11.56□□□□□ -0.56
SMARCB1-206ENST00000477836 CTR9Q6PD62 1173 aa11.56□□□□□ -0.56
SMARCB1-206ENST00000477836 NLRC5Q86WI3 1866 aa11.56□□□□□ -0.56
SMARCB1-206ENST00000477836 ADSSL1Q8N142 457 aa11.56□□□□□ -0.56
SMARCB1-206ENST00000477836 COPS5Q92905 334 aa11.56□□□□□ -0.56
SMARCB1-206ENST00000477836 YME1L1Q96TA2 773 aa11.56□□□□□ -0.56
SMARCB1-206ENST00000477836 MKNK2Q9HBH9 465 aa11.56□□□□□ -0.56
SMARCB1-206ENST00000477836 CFAP47Q6ZTR5 3102 aa11.56□□□□□ -0.56
SMARCB1-206ENST00000477836 LCTP09848 1927 aa11.56□□□□□ -0.56
SMARCB1-206ENST00000477836 ATG2AQ2TAZ0 1938 aa11.56□□□□□ -0.56
SMARCB1-206ENST00000477836 MICAL3Q7RTP6 2002 aa11.55□□□□□ -0.56
SMARCB1-206ENST00000477836 KMT2BQ9UMN6 2715 aaPredicted RBP11.55□□□□□ -0.56
SMARCB1-206ENST00000477836 RBM47A0AV96 593 aaKnown RBP11.55□□□□□ -0.56
SMARCB1-206ENST00000477836 GOLIM4O00461 696 aa11.55□□□□□ -0.56
SMARCB1-206ENST00000477836 GALR2O43603 387 aaPredicted RBP11.55□□□□□ -0.56
SMARCB1-206ENST00000477836 LGR5O75473 907 aa11.55□□□□□ -0.56
SMARCB1-206ENST00000477836 UPP2O95045 317 aa11.55□□□□□ -0.56
SMARCB1-206ENST00000477836 CSPG5O95196 566 aa11.55□□□□□ -0.56
SMARCB1-206ENST00000477836 BMP3P12645 472 aa11.55□□□□□ -0.56
SMARCB1-206ENST00000477836 RASA1P20936 1047 aa11.55□□□□□ -0.56
SMARCB1-206ENST00000477836 ALDH5A1P51649 535 aaPredicted RBP11.55□□□□□ -0.56
SMARCB1-206ENST00000477836 STAT2P52630 851 aa11.55□□□□□ -0.56
SMARCB1-206ENST00000477836 SNAP25P60880 206 aa11.55□□□□□ -0.56
SMARCB1-206ENST00000477836 RBL2Q08999 1139 aa11.55□□□□□ -0.56
SMARCB1-206ENST00000477836 LRRC47Q8N1G4 583 aaKnown RBP11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms