RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 FOCADQ5VW36 1801 aa8.33□□□□□ -1.08
CCDC88A-213ENST00000476903 MROH7-TTC4A0A0A0MT08 1334 aa8.32□□□□□ -1.08
CCDC88A-213ENST00000476903 DOCK1Q14185 1865 aa8.32□□□□□ -1.08
CCDC88A-213ENST00000476903 CDK5RAP2Q96SN8 1893 aa8.32□□□□□ -1.08
CCDC88A-213ENST00000476903 PRR19A6NJB7 356 aa8.32□□□□□ -1.08
CCDC88A-213ENST00000476903 ENTPD3O75355 529 aa8.32□□□□□ -1.08
CCDC88A-213ENST00000476903 LDHCP07864 332 aa8.32□□□□□ -1.08
CCDC88A-213ENST00000476903 HOXD8P13378 290 aaPredicted RBP8.32□□□□□ -1.08
CCDC88A-213ENST00000476903 RASA1P20936 1047 aa8.32□□□□□ -1.08
CCDC88A-213ENST00000476903 MCAMP43121 646 aa8.32□□□□□ -1.08
CCDC88A-213ENST00000476903 BTDP43251 543 aa8.32□□□□□ -1.08
CCDC88A-213ENST00000476903 RGS3P49796 1198 aa8.32□□□□□ -1.08
CCDC88A-213ENST00000476903 MECOMQ03112 1051 aa8.32□□□□□ -1.08
CCDC88A-213ENST00000476903 TTC39AQ5SRH9 613 aa8.32□□□□□ -1.08
CCDC88A-213ENST00000476903 CEP85Q6P2H3 762 aa8.32□□□□□ -1.08
CCDC88A-213ENST00000476903 PI16Q6UXB8 463 aa8.32□□□□□ -1.08
CCDC88A-213ENST00000476903 MIGA2Q7L4E1 593 aa8.32□□□□□ -1.08
CCDC88A-213ENST00000476903 ERO1BQ86YB8 467 aa8.32□□□□□ -1.08
CCDC88A-213ENST00000476903 GALNT11Q8NCW6 608 aa8.32□□□□□ -1.08
CCDC88A-213ENST00000476903 ZKSCAN4Q969J2 545 aaPredicted RBP8.32□□□□□ -1.08
CCDC88A-213ENST00000476903 RAI14Q9P0K7 980 aa8.32□□□□□ -1.08
CCDC88A-213ENST00000476903 STOML1Q9UBI4 398 aa8.32□□□□□ -1.08
CCDC88A-213ENST00000476903 RCAN3Q9UKA8 241 aa8.32□□□□□ -1.08
CCDC88A-213ENST00000476903 USP20Q9Y2K6 914 aa8.32□□□□□ -1.08
CCDC88A-213ENST00000476903 RFX7Q2KHR2 1363 aa8.32□□□□□ -1.08
CCDC88A-213ENST00000476903 GPR75-ASB3A0A0A6YYF3 556 aa8.31□□□□□ -1.08
CCDC88A-213ENST00000476903 CCL15-CCL14A0A0B4J2E2 113 aa8.31□□□□□ -1.08
CCDC88A-213ENST00000476903 MAP4K4O95819 1239 aaPredicted RBP8.31□□□□□ -1.08
CCDC88A-213ENST00000476903 CETPP11597 493 aa8.31□□□□□ -1.08
CCDC88A-213ENST00000476903 GLB1P16278 677 aa8.31□□□□□ -1.08
CCDC88A-213ENST00000476903 PPATQ06203 517 aa8.31□□□□□ -1.08
CCDC88A-213ENST00000476903 CRHR2Q13324 411 aa8.31□□□□□ -1.08
CCDC88A-213ENST00000476903 PPIL2Q13356 520 aa8.31□□□□□ -1.08
CCDC88A-213ENST00000476903 SNAPC2Q13487 334 aa8.31□□□□□ -1.08
CCDC88A-213ENST00000476903 CCL15Q16663 113 aa8.31□□□□□ -1.08
CCDC88A-213ENST00000476903 HSP90AB4PQ58FF6 505 aa8.31□□□□□ -1.08
CCDC88A-213ENST00000476903 GDF6Q6KF10 455 aaPredicted RBP8.31□□□□□ -1.08
CCDC88A-213ENST00000476903 DTX1Q86Y01 620 aa8.31□□□□□ -1.08
CCDC88A-213ENST00000476903 ERC1Q8IUD2 1116 aa8.31□□□□□ -1.08
CCDC88A-213ENST00000476903 MAP4K3Q8IVH8 894 aa8.31□□□□□ -1.08
CCDC88A-213ENST00000476903 ZSCAN29Q8IWY8 852 aaPredicted RBP8.31□□□□□ -1.08
CCDC88A-213ENST00000476903 BRI3BPQ8WY22 251 aa8.31□□□□□ -1.08
CCDC88A-213ENST00000476903 NSUN4Q96CB9 384 aaKnown RBP8.31□□□□□ -1.08
CCDC88A-213ENST00000476903 PTPN18Q99952 460 aa8.31□□□□□ -1.08
CCDC88A-213ENST00000476903 DBNDD2Q9BQY9 259 aa8.31□□□□□ -1.08
CCDC88A-213ENST00000476903 KRTAP4-9Q9BYQ8 210 aa8.31□□□□□ -1.08
CCDC88A-213ENST00000476903 R3HDMLQ9H3Y0 253 aa8.31□□□□□ -1.08
CCDC88A-213ENST00000476903 CHMP4BQ9H444 224 aaKnown RBP8.31□□□□□ -1.08
CCDC88A-213ENST00000476903 LRP2BPQ9P2M1 347 aa8.31□□□□□ -1.08
CCDC88A-213ENST00000476903 ZNF112Q9UJU3 913 aa8.31□□□□□ -1.08
CCDC88A-213ENST00000476903 DDX19BQ9UMR2 479 aa8.31□□□□□ -1.08
CCDC88A-213ENST00000476903 ATAD5Q96QE3 1844 aa8.31□□□□□ -1.08
CCDC88A-213ENST00000476903 PTPRFP10586 1907 aa8.31□□□□□ -1.08
CCDC88A-213ENST00000476903 IGSF3O75054 1194 aa8.3□□□□□ -1.08
CCDC88A-213ENST00000476903 WDHD1O75717 1129 aaPredicted RBP8.3□□□□□ -1.08
CCDC88A-213ENST00000476903 WISP1O95388 367 aa8.3□□□□□ -1.08
CCDC88A-213ENST00000476903 RHBDL3P58872 404 aa8.3□□□□□ -1.08
CCDC88A-213ENST00000476903 PICALMQ13492 652 aa8.3□□□□□ -1.08
CCDC88A-213ENST00000476903 TAF1CQ15572 869 aaPredicted RBP8.3□□□□□ -1.08
CCDC88A-213ENST00000476903 NOL9Q5SY16 702 aaKnown RBP8.3□□□□□ -1.08
CCDC88A-213ENST00000476903 ZFPM1Q8IX07 1006 aa8.3□□□□□ -1.08
CCDC88A-213ENST00000476903 ZNF384Q8TF68 577 aa8.3□□□□□ -1.08
CCDC88A-213ENST00000476903 ERO1AQ96HE7 468 aa8.3□□□□□ -1.08
CCDC88A-213ENST00000476903 ZNF512BQ96KM6 892 aaPredicted RBP8.3□□□□□ -1.08
CCDC88A-213ENST00000476903 NOL10Q9BSC4 688 aaKnown RBP8.3□□□□□ -1.08
CCDC88A-213ENST00000476903 ZFYVE28Q9HCC9 887 aa8.3□□□□□ -1.08
CCDC88A-213ENST00000476903 ZCCHC17Q9NP64 241 aaKnown RBP8.3□□□□□ -1.08
CCDC88A-213ENST00000476903 DDX4Q9NQI0 724 aaKnown RBP8.3□□□□□ -1.08
CCDC88A-213ENST00000476903 DBNLQ9UJU6 430 aaKnown RBP8.3□□□□□ -1.08
CCDC88A-213ENST00000476903 EXOC6BQ9Y2D4 811 aa8.3□□□□□ -1.08
CCDC88A-213ENST00000476903 RBM19Q9Y4C8 960 aaKnown RBP8.3□□□□□ -1.08
CCDC88A-213ENST00000476903 PHIPQ8WWQ0 1821 aa8.3□□□□□ -1.08
CCDC88A-213ENST00000476903 ATRNL1Q5VV63 1379 aa8.3□□□□□ -1.08
CCDC88A-213ENST00000476903 MMP20O60882 483 aa8.29□□□□□ -1.08
CCDC88A-213ENST00000476903 HMMRO75330 724 aa8.29□□□□□ -1.08
CCDC88A-213ENST00000476903 NAA16Q6N069 864 aaPredicted RBP8.29□□□□□ -1.08
CCDC88A-213ENST00000476903 FBXO46Q6PJ61 603 aaPredicted RBP8.29□□□□□ -1.08
CCDC88A-213ENST00000476903 RPAP2Q8IXW5 612 aaPredicted RBP8.29□□□□□ -1.08
CCDC88A-213ENST00000476903 SCYL3Q8IZE3 742 aa8.29□□□□□ -1.08
CCDC88A-213ENST00000476903 FAM43AQ8N2R8 423 aa8.29□□□□□ -1.08
CCDC88A-213ENST00000476903 GOLGA6L2Q8N9W4 650 aaPredicted RBP8.29□□□□□ -1.08
CCDC88A-213ENST00000476903 EAF2Q96CJ1 260 aaPredicted RBP8.29□□□□□ -1.08
CCDC88A-213ENST00000476903 CCDC8Q9H0W5 538 aaPredicted RBP8.29□□□□□ -1.08
CCDC88A-213ENST00000476903 ADGRE2Q9UHX3 823 aa8.29□□□□□ -1.08
CCDC88A-213ENST00000476903 TRIM33Q9UPN9 1127 aa8.29□□□□□ -1.08
CCDC88A-213ENST00000476903 COL2A1P02458 1487 aaPredicted RBP8.29□□□□□ -1.08
CCDC88A-213ENST00000476903 MYH1P12882 1939 aa8.29□□□□□ -1.08
CCDC88A-213ENST00000476903 CENPFP49454 3210 aa8.28□□□□□ -1.08
CCDC88A-213ENST00000476903 HTTP42858 3142 aa8.28□□□□□ -1.08
CCDC88A-213ENST00000476903 DDTLA6NHG4 134 aaPredicted RBP8.28□□□□□ -1.08
CCDC88A-213ENST00000476903 BTBD19C9JJ37 291 aa8.28□□□□□ -1.08
CCDC88A-213ENST00000476903 BAG3O95817 575 aa8.28□□□□□ -1.08
CCDC88A-213ENST00000476903 CYP2E1P05181 493 aaPredicted RBP8.28□□□□□ -1.08
CCDC88A-213ENST00000476903 ZAP70P43403 619 aa8.28□□□□□ -1.08
CCDC88A-213ENST00000476903 RGS19P49795 217 aa8.28□□□□□ -1.08
CCDC88A-213ENST00000476903 SP3Q02447 781 aa8.28□□□□□ -1.08
CCDC88A-213ENST00000476903 AACSQ86V21 672 aa8.28□□□□□ -1.08
CCDC88A-213ENST00000476903 TEX11Q8IYF3 940 aa8.28□□□□□ -1.08
CCDC88A-213ENST00000476903 CD99L2Q8TCZ2 262 aa8.28□□□□□ -1.08
CCDC88A-213ENST00000476903 MYO19Q96H55 970 aa8.28□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 70.3 ms