RNA–Protein interactions for RNA: ENST00000476395.1

VAPB-205, Transcript of VAMP associated protein B and C, humanhuman

TSL 2

Gene VAPB, Length 3,583 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPB-205ENST00000476395 NF2P35240 595 aa9.32□□□□□ -0.92
VAPB-205ENST00000476395 HDLBPQ00341 1268 aaKnown RBP9.32□□□□□ -0.92
VAPB-205ENST00000476395 TBC1D8BQ0IIM8 1120 aa9.32□□□□□ -0.92
VAPB-205ENST00000476395 FOXD4Q12950 439 aaPredicted RBP9.32□□□□□ -0.92
VAPB-205ENST00000476395 IFT88Q13099 833 aa9.32□□□□□ -0.92
VAPB-205ENST00000476395 PPFIA1Q13136 1202 aa9.32□□□□□ -0.92
VAPB-205ENST00000476395 PAK1Q13153 545 aa9.32□□□□□ -0.92
VAPB-205ENST00000476395 RRAGBQ5VZM2 374 aa9.32□□□□□ -0.92
VAPB-205ENST00000476395 PAPD7Q5XG87 772 aaKnown RBP9.32□□□□□ -0.92
VAPB-205ENST00000476395 CHADLQ6NUI6 762 aa9.32□□□□□ -0.92
VAPB-205ENST00000476395 AMIGO3Q86WK7 504 aa9.32□□□□□ -0.92
VAPB-205ENST00000476395 CTAGE1Q96RT6 745 aa9.32□□□□□ -0.92
VAPB-205ENST00000476395 PCDHA6Q9UN73 950 aa9.32□□□□□ -0.92
VAPB-205ENST00000476395 PCDHA8Q9Y5H6 950 aa9.32□□□□□ -0.92
VAPB-205ENST00000476395 SNED1Q8TER0 1413 aa9.31□□□□□ -0.92
VAPB-205ENST00000476395 EIF4E1BA6NMX2 242 aaKnown RBP9.31□□□□□ -0.92
VAPB-205ENST00000476395 EPHB6O15197 1021 aa9.31□□□□□ -0.92
VAPB-205ENST00000476395 PRDX5P30044 214 aa9.31□□□□□ -0.92
VAPB-205ENST00000476395 PEX19P40855 299 aa9.31□□□□□ -0.92
VAPB-205ENST00000476395 ACCSLQ4AC99 568 aa9.31□□□□□ -0.92
VAPB-205ENST00000476395 CCDC152Q4G0S7 254 aa9.31□□□□□ -0.92
VAPB-205ENST00000476395 ZNF662Q6ZS27 426 aa9.31□□□□□ -0.92
VAPB-205ENST00000476395 TMTC1Q8IUR5 882 aa9.31□□□□□ -0.92
VAPB-205ENST00000476395 CCDC13Q8IYE1 715 aa9.31□□□□□ -0.92
VAPB-205ENST00000476395 MARCH10Q8NA82 808 aaPredicted RBP9.31□□□□□ -0.92
VAPB-205ENST00000476395 EEF2KMTQ96G04 330 aa9.31□□□□□ -0.92
VAPB-205ENST00000476395 DISC1Q9NRI5 854 aa9.31□□□□□ -0.92
VAPB-205ENST00000476395 ABCF2Q9UG63 623 aa9.31□□□□□ -0.92
VAPB-205ENST00000476395 WDR3Q9UNX4 943 aaKnown RBP eCLIP9.31□□□□□ -0.92
VAPB-205ENST00000476395 TTF2Q9UNY4 1162 aaKnown RBP9.31□□□□□ -0.92
VAPB-205ENST00000476395 LGALS16A8MUM7 142 aa9.31□□□□□ -0.92
VAPB-205ENST00000476395 PPP1R12AO14974 1030 aaPredicted RBP9.31□□□□□ -0.92
VAPB-205ENST00000476395 MEFVO15553 781 aaPredicted RBP9.31□□□□□ -0.92
VAPB-205ENST00000476395 SF3B3Q15393 1217 aaKnown RBP9.31□□□□□ -0.92
VAPB-205ENST00000476395 PREPLQ4J6C6 727 aaPredicted RBP9.31□□□□□ -0.92
VAPB-205ENST00000476395 POTEDQ86YR6 584 aa9.31□□□□□ -0.92
VAPB-205ENST00000476395 GIMAP8Q8ND71 665 aaPredicted RBP9.31□□□□□ -0.92
VAPB-205ENST00000476395 SMCR8Q8TEV9 937 aaPredicted RBP9.31□□□□□ -0.92
VAPB-205ENST00000476395 SH3GL2Q99962 352 aa9.31□□□□□ -0.92
VAPB-205ENST00000476395 MMTAG2Q9BU76 263 aaKnown RBP9.31□□□□□ -0.92
VAPB-205ENST00000476395 VIPAS39Q9H9C1 493 aa9.31□□□□□ -0.92
VAPB-205ENST00000476395 CAPN11Q9UMQ6 739 aa9.31□□□□□ -0.92
VAPB-205ENST00000476395 ROBO3Q96MS0 1386 aa9.31□□□□□ -0.92
VAPB-205ENST00000476395 ERICH2A1L162 156 aa9.3□□□□□ -0.92
VAPB-205ENST00000476395 RDXP35241 583 aaKnown RBP9.3□□□□□ -0.92
VAPB-205ENST00000476395 SF3B2Q13435 895 aaKnown RBP9.3□□□□□ -0.92
VAPB-205ENST00000476395 ARMC3Q5W041 872 aa9.3□□□□□ -0.92
VAPB-205ENST00000476395 DNAJC14Q6Y2X3 702 aaPredicted RBP9.3□□□□□ -0.92
VAPB-205ENST00000476395 CCNI2Q6ZMN8 369 aaPredicted RBP9.3□□□□□ -0.92
VAPB-205ENST00000476395 RNPC3Q96LT9 517 aaKnown RBP9.3□□□□□ -0.92
VAPB-205ENST00000476395 SLC40A1Q9NP59 571 aa9.3□□□□□ -0.92
VAPB-205ENST00000476395 BSDC1Q9NW68 430 aaPredicted RBP9.3□□□□□ -0.92
VAPB-205ENST00000476395 ZSCAN5CA6NGD5 496 aaPredicted RBP9.3□□□□□ -0.92
VAPB-205ENST00000476395 KRT9P35527 623 aa9.3□□□□□ -0.92
VAPB-205ENST00000476395 USP8P40818 1118 aa9.3□□□□□ -0.92
VAPB-205ENST00000476395 TRAPPC10P48553 1259 aa9.3□□□□□ -0.92
VAPB-205ENST00000476395 NAA35Q5VZE5 725 aa9.3□□□□□ -0.92
VAPB-205ENST00000476395 ARL6IP4Q66PJ3 421 aaKnown RBP9.3□□□□□ -0.92
VAPB-205ENST00000476395 CYP26C1Q6V0L0 522 aa9.3□□□□□ -0.92
VAPB-205ENST00000476395 GET4Q7L5D6 327 aaPredicted RBP9.3□□□□□ -0.92
VAPB-205ENST00000476395 CATIPQ7Z7H3 387 aa9.3□□□□□ -0.92
VAPB-205ENST00000476395 NIP7Q9Y221 180 aaKnown RBP eCLIP9.3□□□□□ -0.92
VAPB-205ENST00000476395 EPN1Q9Y6I3 576 aaPredicted RBP9.3□□□□□ -0.92
VAPB-205ENST00000476395 TAF1LQ8IZX4 1826 aa9.3□□□□□ -0.92
VAPB-205ENST00000476395 N4BP3O15049 544 aa9.3□□□□□ -0.92
VAPB-205ENST00000476395 CHUKO15111 745 aa9.3□□□□□ -0.92
VAPB-205ENST00000476395 RHOBTB3O94955 611 aa9.3□□□□□ -0.92
VAPB-205ENST00000476395 PLEKP08567 350 aaPredicted RBP9.3□□□□□ -0.92
VAPB-205ENST00000476395 MYBL1P10243 752 aa9.3□□□□□ -0.92
VAPB-205ENST00000476395 TM4SF1P30408 202 aa9.3□□□□□ -0.92
VAPB-205ENST00000476395 CXCR5P32302 372 aa9.3□□□□□ -0.92
VAPB-205ENST00000476395 CLNS1AP54105 237 aaKnown RBP9.3□□□□□ -0.92
VAPB-205ENST00000476395 CEP85LQ5SZL2 805 aa9.3□□□□□ -0.92
VAPB-205ENST00000476395 ANKS1AQ92625 1134 aa9.3□□□□□ -0.92
VAPB-205ENST00000476395 TSPAN18Q96SJ8 248 aa9.3□□□□□ -0.92
VAPB-205ENST00000476395 LRRC1Q9BTT6 524 aa9.3□□□□□ -0.92
VAPB-205ENST00000476395 HAUS2Q9NVX0 235 aa9.3□□□□□ -0.92
VAPB-205ENST00000476395 MYO1AQ9UBC5 1043 aa9.3□□□□□ -0.92
VAPB-205ENST00000476395 MYH10P35580 1976 aa9.3□□□□□ -0.92
VAPB-205ENST00000476395 LTBP1Q14766 1721 aa9.29□□□□□ -0.92
VAPB-205ENST00000476395 LOC102724428A0A0B4J2F2 783 aa9.29□□□□□ -0.92
VAPB-205ENST00000476395 A0A1W2PQC6 194 aa9.29□□□□□ -0.92
VAPB-205ENST00000476395 ESYT3A0FGR9 886 aa9.29□□□□□ -0.92
VAPB-205ENST00000476395 KIAA0754O94854 1291 aa9.29□□□□□ -0.92
VAPB-205ENST00000476395 FSBPO95073 299 aa9.29□□□□□ -0.92
VAPB-205ENST00000476395 SRGNP10124 158 aa9.29□□□□□ -0.92
VAPB-205ENST00000476395 SIK1P57059 783 aa9.29□□□□□ -0.92
VAPB-205ENST00000476395 UBE4AQ14139 1066 aa9.29□□□□□ -0.92
VAPB-205ENST00000476395 CCDC40Q4G0X9 1142 aa9.29□□□□□ -0.92
VAPB-205ENST00000476395 SBK1Q52WX2 424 aa9.29□□□□□ -0.92
VAPB-205ENST00000476395 ZSCAN29Q8IWY8 852 aaPredicted RBP9.29□□□□□ -0.92
VAPB-205ENST00000476395 CAGE1Q8TC20 777 aa9.29□□□□□ -0.92
VAPB-205ENST00000476395 CERKQ8TCT0 537 aa9.29□□□□□ -0.92
VAPB-205ENST00000476395 C8orf37Q96NL8 207 aa9.29□□□□□ -0.92
VAPB-205ENST00000476395 SALL4Q9UJQ4 1053 aa9.29□□□□□ -0.92
VAPB-205ENST00000476395 MYH7BA7E2Y1 1941 aa9.29□□□□□ -0.92
VAPB-205ENST00000476395 STXBP3O00186 592 aa9.29□□□□□ -0.92
VAPB-205ENST00000476395 USP17L8P0C7I0 530 aa9.29□□□□□ -0.92
VAPB-205ENST00000476395 GCFC2P16383 781 aaKnown RBP9.29□□□□□ -0.92
VAPB-205ENST00000476395 IGHMBP2P38935 993 aaKnown RBP9.29□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms