RNA–Protein interactions for RNA: ENST00000476379.5

CCDC39-204, Transcript of coiled-coil domain containing 39, humanhuman

TSL 2

Gene CCDC39, Length 4,451 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-204ENST00000476379 OR2W6PQ8NHA6 318 aa5.54□□□□□ -1.52
CCDC39-204ENST00000476379 AFAP1L1Q8TED9 768 aa5.54□□□□□ -1.52
CCDC39-204ENST00000476379 FAM212AQ96EL1 285 aa5.54□□□□□ -1.52
CCDC39-204ENST00000476379 FAM84BQ96KN1 310 aaPredicted RBP5.54□□□□□ -1.52
CCDC39-204ENST00000476379 MMS19Q96T76 1030 aa5.54□□□□□ -1.52
CCDC39-204ENST00000476379 KRT12Q99456 494 aa5.54□□□□□ -1.52
CCDC39-204ENST00000476379 IMPACTQ9P2X3 320 aa5.54□□□□□ -1.52
CCDC39-204ENST00000476379 MYO1AQ9UBC5 1043 aa5.54□□□□□ -1.52
CCDC39-204ENST00000476379 SZT2Q5T011 3432 aa5.54□□□□□ -1.52
CCDC39-204ENST00000476379 COL14A1Q05707 1796 aaKnown RBP5.53□□□□□ -1.52
CCDC39-204ENST00000476379 A0A1W2PQ27 194 aa5.53□□□□□ -1.52
CCDC39-204ENST00000476379 A0A1W2PQ64 194 aa5.53□□□□□ -1.52
CCDC39-204ENST00000476379 A0A1W2PQD8 194 aa5.53□□□□□ -1.52
CCDC39-204ENST00000476379 EFCAB8A8MWE9 144 aa5.53□□□□□ -1.52
CCDC39-204ENST00000476379 KCNK3O14649 394 aa5.53□□□□□ -1.52
CCDC39-204ENST00000476379 GFPT1Q06210 699 aaPredicted RBP5.53□□□□□ -1.52
CCDC39-204ENST00000476379 E2F5Q15329 346 aa5.53□□□□□ -1.52
CCDC39-204ENST00000476379 PARP10Q53GL7 1025 aa5.53□□□□□ -1.52
CCDC39-204ENST00000476379 CCDC174Q6PII3 467 aa5.53□□□□□ -1.52
CCDC39-204ENST00000476379 BLIDQ8IZY5 108 aa5.53□□□□□ -1.52
CCDC39-204ENST00000476379 SRBD1Q8N5C6 995 aaKnown RBP5.53□□□□□ -1.52
CCDC39-204ENST00000476379 FAM133AQ8N9E0 248 aa5.53□□□□□ -1.52
CCDC39-204ENST00000476379 SECISBP2LQ93073 1101 aaKnown RBP5.53□□□□□ -1.52
CCDC39-204ENST00000476379 TMEM60Q9H2L4 133 aa5.53□□□□□ -1.52
CCDC39-204ENST00000476379 ADAMTS1Q9UHI8 967 aa5.53□□□□□ -1.52
CCDC39-204ENST00000476379 FAM208AQ9UK61 1670 aaKnown RBP5.53□□□□□ -1.52
CCDC39-204ENST00000476379 USP17L15C9J2P7 530 aa5.53□□□□□ -1.52
CCDC39-204ENST00000476379 USP17L13C9JLJ4 530 aa5.53□□□□□ -1.52
CCDC39-204ENST00000476379 USP17L11C9JVI0 530 aa5.53□□□□□ -1.52
CCDC39-204ENST00000476379 USP17L18D6R9N7 530 aa5.53□□□□□ -1.52
CCDC39-204ENST00000476379 USP17L22D6RA61 530 aa5.53□□□□□ -1.52
CCDC39-204ENST00000476379 USP17L17D6RBQ6 530 aa5.53□□□□□ -1.52
CCDC39-204ENST00000476379 USP17L19D6RCP7 530 aa5.53□□□□□ -1.52
CCDC39-204ENST00000476379 USP17L20D6RJB6 530 aa5.53□□□□□ -1.52
CCDC39-204ENST00000476379 TACC1O75410 805 aa5.53□□□□□ -1.52
CCDC39-204ENST00000476379 FMNL1O95466 1100 aaPredicted RBP5.53□□□□□ -1.52
CCDC39-204ENST00000476379 CFBP00751 764 aa5.53□□□□□ -1.52
CCDC39-204ENST00000476379 STAT3P40763 770 aa5.53□□□□□ -1.52
CCDC39-204ENST00000476379 CYP2J2P51589 502 aa5.53□□□□□ -1.52
CCDC39-204ENST00000476379 GABPB1Q06547 395 aaPredicted RBP5.53□□□□□ -1.52
CCDC39-204ENST00000476379 USP17L24Q0WX57 530 aa5.53□□□□□ -1.52
CCDC39-204ENST00000476379 TMEM266Q2M3C6 531 aa5.53□□□□□ -1.52
CCDC39-204ENST00000476379 HP1BP3Q5SSJ5 553 aaPredicted RBP5.53□□□□□ -1.52
CCDC39-204ENST00000476379 SPATA1Q5VX52 437 aa5.53□□□□□ -1.52
CCDC39-204ENST00000476379 RESP18Q5W5W9 173 aa5.53□□□□□ -1.52
CCDC39-204ENST00000476379 KANK3Q6NY19 840 aa5.53□□□□□ -1.52
CCDC39-204ENST00000476379 USP17L6PQ6QN14 398 aa5.53□□□□□ -1.52
CCDC39-204ENST00000476379 KIRREL3Q8IZU9 778 aa5.53□□□□□ -1.52
CCDC39-204ENST00000476379 FAM76AQ8TAV0 307 aa5.53□□□□□ -1.52
CCDC39-204ENST00000476379 IGDCC4Q8TDY8 1250 aa5.53□□□□□ -1.52
CCDC39-204ENST00000476379 RBM17Q96I25 401 aaKnown RBP5.53□□□□□ -1.52
CCDC39-204ENST00000476379 ALS2CR12Q96Q35 445 aa5.53□□□□□ -1.52
CCDC39-204ENST00000476379 PTPN22Q9Y2R2 807 aa5.53□□□□□ -1.52
CCDC39-204ENST00000476379 RIPOR2Q9Y4F9 1068 aa5.53□□□□□ -1.52
CCDC39-204ENST00000476379 GOLGA4Q13439 2230 aaKnown RBP5.53□□□□□ -1.52
CCDC39-204ENST00000476379 LMO7Q8WWI1 1683 aa5.53□□□□□ -1.52
CCDC39-204ENST00000476379 RNF225M0QZC1 329 aaPredicted RBP5.53□□□□□ -1.52
CCDC39-204ENST00000476379 HSF2BPO75031 334 aa5.53□□□□□ -1.52
CCDC39-204ENST00000476379 TADA3O75528 432 aa5.53□□□□□ -1.52
CCDC39-204ENST00000476379 PMS1P54277 932 aaKnown RBP5.53□□□□□ -1.52
CCDC39-204ENST00000476379 DPYDQ12882 1025 aa5.53□□□□□ -1.52
CCDC39-204ENST00000476379 PRR16Q569H4 304 aa5.53□□□□□ -1.52
CCDC39-204ENST00000476379 DALRD3Q5D0E6 543 aaKnown RBP5.53□□□□□ -1.52
CCDC39-204ENST00000476379 KRT79Q5XKE5 535 aa5.53□□□□□ -1.52
CCDC39-204ENST00000476379 SRGAP1Q7Z6B7 1085 aa5.53□□□□□ -1.52
CCDC39-204ENST00000476379 ZFPM1Q8IX07 1006 aa5.53□□□□□ -1.52
CCDC39-204ENST00000476379 OR8K1Q8NGG5 319 aa5.53□□□□□ -1.52
CCDC39-204ENST00000476379 TBC1D16Q8TBP0 767 aa5.53□□□□□ -1.52
CCDC39-204ENST00000476379 TBCKQ8TEA7 893 aa5.53□□□□□ -1.52
CCDC39-204ENST00000476379 SH3RF3Q8TEJ3 882 aaPredicted RBP5.53□□□□□ -1.52
CCDC39-204ENST00000476379 LSM14BQ9BX40 385 aaKnown RBP5.53□□□□□ -1.52
CCDC39-204ENST00000476379 NYXQ9GZU5 481 aa5.53□□□□□ -1.52
CCDC39-204ENST00000476379 CDC23Q9UJX2 597 aa5.53□□□□□ -1.52
CCDC39-204ENST00000476379 RRP15Q9Y3B9 282 aaKnown RBP5.53□□□□□ -1.52
CCDC39-204ENST00000476379 KCPQ6ZWJ8 1503 aa5.53□□□□□ -1.52
CCDC39-204ENST00000476379 E7EVH7 732 aa5.52□□□□□ -1.53
CCDC39-204ENST00000476379 MYO1CO00159 1063 aa5.52□□□□□ -1.53
CCDC39-204ENST00000476379 CALRP27797 417 aaKnown RBP5.52□□□□□ -1.53
CCDC39-204ENST00000476379 GGCXP38435 758 aa5.52□□□□□ -1.53
CCDC39-204ENST00000476379 NFIAQ12857 509 aa5.52□□□□□ -1.53
CCDC39-204ENST00000476379 GRAPQ13588 217 aa5.52□□□□□ -1.53
CCDC39-204ENST00000476379 TRIP13Q15645 432 aaPredicted RBP5.52□□□□□ -1.53
CCDC39-204ENST00000476379 CEP85LQ5SZL2 805 aa5.52□□□□□ -1.53
CCDC39-204ENST00000476379 CFAP58Q5T655 872 aa5.52□□□□□ -1.53
CCDC39-204ENST00000476379 NYAP1Q6ZVC0 841 aa5.52□□□□□ -1.53
CCDC39-204ENST00000476379 DDX42Q86XP3 938 aaKnown RBP eCLIP5.52□□□□□ -1.53
CCDC39-204ENST00000476379 GPR161Q8N6U8 529 aaKnown RBP5.52□□□□□ -1.53
CCDC39-204ENST00000476379 GRAPLQ8TC17 118 aaPredicted RBP5.52□□□□□ -1.53
CCDC39-204ENST00000476379 RRP36Q96EU6 259 aaKnown RBP5.52□□□□□ -1.53
CCDC39-204ENST00000476379 CTAGE1Q96RT6 745 aa5.52□□□□□ -1.53
CCDC39-204ENST00000476379 EYA3Q99504 573 aa5.52□□□□□ -1.53
CCDC39-204ENST00000476379 NFU1Q9UMS0 254 aa5.52□□□□□ -1.53
CCDC39-204ENST00000476379 ADGRG1Q9Y653 693 aa5.52□□□□□ -1.53
CCDC39-204ENST00000476379 CNTNAP4Q9C0A0 1308 aa5.52□□□□□ -1.53
CCDC39-204ENST00000476379 ANKRD26Q9UPS8 1709 aa5.52□□□□□ -1.53
CCDC39-204ENST00000476379 BRWD3Q6RI45 1802 aa5.52□□□□□ -1.53
CCDC39-204ENST00000476379 GOLGA6L10A0A0M3HER8 536 aa5.52□□□□□ -1.53
CCDC39-204ENST00000476379 TDP2O95551 362 aa5.52□□□□□ -1.53
CCDC39-204ENST00000476379 COL4A1P02462 1669 aa5.52□□□□□ -1.53
CCDC39-204ENST00000476379 KRT14P02533 472 aa5.52□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms