RNA–Protein interactions for RNA: ENST00000475549.1

HDAC3-207, Transcript of histone deacetylase 3, humanhuman

TSL 2

Gene HDAC3, Length 297 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-207ENST00000475549 PWP2Q15269 919 aaKnown RBP8.22□□□□□ -1.09
HDAC3-207ENST00000475549 IMMTQ16891 758 aaKnown RBP8.22□□□□□ -1.09
HDAC3-207ENST00000475549 QRICH1Q2TAL8 776 aa8.22□□□□□ -1.09
HDAC3-207ENST00000475549 IQCA1Q86XH1 822 aa8.22□□□□□ -1.09
HDAC3-207ENST00000475549 PHF6Q8IWS0 365 aaKnown RBP eCLIP8.22□□□□□ -1.09
HDAC3-207ENST00000475549 TMEM199Q8N511 208 aa8.22□□□□□ -1.09
HDAC3-207ENST00000475549 DNERQ8NFT8 737 aa8.22□□□□□ -1.09
HDAC3-207ENST00000475549 HERVK_113Q902F9 699 aa8.22□□□□□ -1.09
HDAC3-207ENST00000475549 CTAGE1Q96RT6 745 aa8.22□□□□□ -1.09
HDAC3-207ENST00000475549 COL25A1Q9BXS0 654 aaPredicted RBP8.22□□□□□ -1.09
HDAC3-207ENST00000475549 ZNF576Q9H609 170 aa8.22□□□□□ -1.09
HDAC3-207ENST00000475549 KAT14Q9H8E8 782 aa8.22□□□□□ -1.09
HDAC3-207ENST00000475549 IL23AQ9NPF7 189 aa8.22□□□□□ -1.09
HDAC3-207ENST00000475549 MAD2L2Q9UI95 211 aa8.22□□□□□ -1.09
HDAC3-207ENST00000475549 PNMA2Q9UL42 364 aa8.22□□□□□ -1.09
HDAC3-207ENST00000475549 CHD7Q9P2D1 2997 aa8.22□□□□□ -1.09
HDAC3-207ENST00000475549 TLR3O15455 904 aaKnown RBP8.21□□□□□ -1.1
HDAC3-207ENST00000475549 RGS20O76081 388 aa8.21□□□□□ -1.1
HDAC3-207ENST00000475549 FGBP02675 491 aa8.21□□□□□ -1.1
HDAC3-207ENST00000475549 MYL3P08590 195 aa8.21□□□□□ -1.1
HDAC3-207ENST00000475549 PARP1P09874 1014 aaKnown RBP8.21□□□□□ -1.1
HDAC3-207ENST00000475549 TXNP10599 105 aaKnown RBP8.21□□□□□ -1.1
HDAC3-207ENST00000475549 CHMLP26374 656 aa8.21□□□□□ -1.1
HDAC3-207ENST00000475549 NT5C2P49902 561 aa8.21□□□□□ -1.1
HDAC3-207ENST00000475549 PDE4DQ08499 809 aa8.21□□□□□ -1.1
HDAC3-207ENST00000475549 COL9A3Q14050 684 aaPredicted RBP8.21□□□□□ -1.1
HDAC3-207ENST00000475549 GPNMBQ14956 572 aa8.21□□□□□ -1.1
HDAC3-207ENST00000475549 LY6KQ17RY6 165 aa8.21□□□□□ -1.1
HDAC3-207ENST00000475549 NBPF20Q3BBV1 942 aa8.21□□□□□ -1.1
HDAC3-207ENST00000475549 CCDC178Q5BJE1 867 aa8.21□□□□□ -1.1
HDAC3-207ENST00000475549 STOX1Q6ZVD7 989 aa8.21□□□□□ -1.1
HDAC3-207ENST00000475549 OTOP2Q7RTS6 562 aa8.21□□□□□ -1.1
HDAC3-207ENST00000475549 MAFAQ8NHW3 353 aaPredicted RBP8.21□□□□□ -1.1
HDAC3-207ENST00000475549 SCFD2Q8WU76 684 aa8.21□□□□□ -1.1
HDAC3-207ENST00000475549 MTMR8Q96EF0 704 aa8.21□□□□□ -1.1
HDAC3-207ENST00000475549 SCLYQ96I15 445 aa8.21□□□□□ -1.1
HDAC3-207ENST00000475549 KRT23Q9C075 422 aa8.21□□□□□ -1.1
HDAC3-207ENST00000475549 CTNNA3Q9UI47 895 aa8.21□□□□□ -1.1
HDAC3-207ENST00000475549 YBX2Q9Y2T7 364 aaKnown RBP8.21□□□□□ -1.1
HDAC3-207ENST00000475549 XIRP2A4UGR9 3374 aa8.21□□□□□ -1.1
HDAC3-207ENST00000475549 PLXNA1Q9UIW2 1896 aa8.21□□□□□ -1.1
HDAC3-207ENST00000475549 MYH4Q9Y623 1939 aa8.21□□□□□ -1.1
HDAC3-207ENST00000475549 CUL9Q8IWT3 2517 aa8.21□□□□□ -1.1
HDAC3-207ENST00000475549 TMEM265A0A087WTH1 108 aa8.2□□□□□ -1.1
HDAC3-207ENST00000475549 PALM3A6NDB9 673 aaPredicted RBP8.2□□□□□ -1.1
HDAC3-207ENST00000475549 KLRF2D3W0D1 207 aa8.2□□□□□ -1.1
HDAC3-207ENST00000475549 CYTH3O43739 400 aa8.2□□□□□ -1.1
HDAC3-207ENST00000475549 MYOGP15173 224 aa8.2□□□□□ -1.1
HDAC3-207ENST00000475549 CPT1AP50416 773 aa8.2□□□□□ -1.1
HDAC3-207ENST00000475549 RABGGTBP53611 331 aa8.2□□□□□ -1.1
HDAC3-207ENST00000475549 ARHGAP1Q07960 439 aa8.2□□□□□ -1.1
HDAC3-207ENST00000475549 ADGRE1Q14246 886 aa8.2□□□□□ -1.1
HDAC3-207ENST00000475549 TTLL4Q14679 1199 aa8.2□□□□□ -1.1
HDAC3-207ENST00000475549 PPP2R5BQ15173 497 aa8.2□□□□□ -1.1
HDAC3-207ENST00000475549 ASPRV1Q53RT3 343 aa8.2□□□□□ -1.1
HDAC3-207ENST00000475549 SEPT14Q6ZU15 432 aa8.2□□□□□ -1.1
HDAC3-207ENST00000475549 CHST3Q7LGC8 479 aa8.2□□□□□ -1.1
HDAC3-207ENST00000475549 FBXO11Q86XK2 927 aa8.2□□□□□ -1.1
HDAC3-207ENST00000475549 USP38Q8NB14 1042 aa8.2□□□□□ -1.1
HDAC3-207ENST00000475549 OR6J1Q8NGC5 347 aa8.2□□□□□ -1.1
HDAC3-207ENST00000475549 NSUN6Q8TEA1 469 aaKnown RBP8.2□□□□□ -1.1
HDAC3-207ENST00000475549 AFG1LQ8WV93 481 aa8.2□□□□□ -1.1
HDAC3-207ENST00000475549 KAT2BQ92831 832 aa8.2□□□□□ -1.1
HDAC3-207ENST00000475549 TIFAQ96CG3 184 aa8.2□□□□□ -1.1
HDAC3-207ENST00000475549 RMDN3Q96TC7 470 aa8.2□□□□□ -1.1
HDAC3-207ENST00000475549 MTG1Q9BT17 334 aaPredicted RBP8.2□□□□□ -1.1
HDAC3-207ENST00000475549 SEZ6LQ9BYH1 1024 aa8.2□□□□□ -1.1
HDAC3-207ENST00000475549 DDX41Q9UJV9 622 aaKnown RBP8.2□□□□□ -1.1
HDAC3-207ENST00000475549 ABCB11O95342 1321 aa8.2□□□□□ -1.1
HDAC3-207ENST00000475549 ZBTB5O15062 677 aa8.19□□□□□ -1.1
HDAC3-207ENST00000475549 NKRFO15226 690 aaKnown RBP eCLIP8.19□□□□□ -1.1
HDAC3-207ENST00000475549 SGSM2O43147 1006 aa8.19□□□□□ -1.1
HDAC3-207ENST00000475549 NR3C2P08235 984 aa8.19□□□□□ -1.1
HDAC3-207ENST00000475549 MMP3P08254 477 aa8.19□□□□□ -1.1
HDAC3-207ENST00000475549 FOSL2P15408 326 aa8.19□□□□□ -1.1
HDAC3-207ENST00000475549 EIF2AK2P19525 551 aaKnown RBP8.19□□□□□ -1.1
HDAC3-207ENST00000475549 HOXA13P31271 388 aaPredicted RBP8.19□□□□□ -1.1
HDAC3-207ENST00000475549 HSD17B4P51659 736 aa8.19□□□□□ -1.1
HDAC3-207ENST00000475549 ANTXR2P58335 489 aa8.19□□□□□ -1.1
HDAC3-207ENST00000475549 SP2Q02086 613 aa8.19□□□□□ -1.1
HDAC3-207ENST00000475549 GHRHRQ02643 423 aa8.19□□□□□ -1.1
HDAC3-207ENST00000475549 TROAPQ12815 778 aa8.19□□□□□ -1.1
HDAC3-207ENST00000475549 IFIT1BQ5T764 474 aaKnown RBP8.19□□□□□ -1.1
HDAC3-207ENST00000475549 NFRKBQ6P4R8 1299 aa8.19□□□□□ -1.1
HDAC3-207ENST00000475549 PSRC1Q6PGN9 363 aaPredicted RBP8.19□□□□□ -1.1
HDAC3-207ENST00000475549 IGDCC4Q8TDY8 1250 aa8.19□□□□□ -1.1
HDAC3-207ENST00000475549 ZFP91Q96JP5 570 aaPredicted RBP8.19□□□□□ -1.1
HDAC3-207ENST00000475549 IWS1Q96ST2 819 aa8.19□□□□□ -1.1
HDAC3-207ENST00000475549 UBAC1Q9BSL1 405 aa8.19□□□□□ -1.1
HDAC3-207ENST00000475549 MAF1Q9H063 256 aa8.19□□□□□ -1.1
HDAC3-207ENST00000475549 PRDM12Q9H4Q4 367 aa8.19□□□□□ -1.1
HDAC3-207ENST00000475549 BCAS3Q9H6U6 928 aa8.19□□□□□ -1.1
HDAC3-207ENST00000475549 RIOX1Q9H6W3 641 aa8.19□□□□□ -1.1
HDAC3-207ENST00000475549 CNNM2Q9H8M5 875 aa8.19□□□□□ -1.1
HDAC3-207ENST00000475549 PRDM6Q9NQX0 595 aa8.19□□□□□ -1.1
HDAC3-207ENST00000475549 GPHNQ9NQX3 736 aaPredicted RBP8.19□□□□□ -1.1
HDAC3-207ENST00000475549 POLR3EQ9NVU0 708 aa8.19□□□□□ -1.1
HDAC3-207ENST00000475549 MRPL11Q9Y3B7 192 aaKnown RBP8.19□□□□□ -1.1
HDAC3-207ENST00000475549 E7EWF7 191 aa8.18□□□□□ -1.1
HDAC3-207ENST00000475549 DHX16O60231 1041 aaKnown RBP8.18□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms