RNA–Protein interactions for RNA: ENST00000474655.6

SYNE1-222, Transcript of spectrin repeat containing nuclear envelope protein 1, human

TSL 1 (best)

Gene SYNE1, Length 1,798 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE1-222	ENST00000474655	TBX3	O15119	743 aa		13.73	□□□□□ -0.21
SYNE1-222	ENST00000474655	SFPQ	P23246	707 aa	Known RBP eCLIP	13.73	□□□□□ -0.21
SYNE1-222	ENST00000474655	HOXA7	P31268	230 aa	Predicted RBP	13.73	□□□□□ -0.21
SYNE1-222	ENST00000474655	CIITA	P33076	1130 aa		13.73	□□□□□ -0.21
SYNE1-222	ENST00000474655	PTGER2	P43116	358 aa		13.73	□□□□□ -0.21
SYNE1-222	ENST00000474655	STX17	P56962	302 aa		13.73	□□□□□ -0.21
SYNE1-222	ENST00000474655	ARHGAP4	P98171	946 aa		13.73	□□□□□ -0.21
SYNE1-222	ENST00000474655	IK	Q13123	557 aa	Predicted RBP	13.73	□□□□□ -0.21
SYNE1-222	ENST00000474655		Q4G0T1	1027 aa		13.73	□□□□□ -0.21
SYNE1-222	ENST00000474655	MIGA2	Q7L4E1	593 aa		13.73	□□□□□ -0.21
SYNE1-222	ENST00000474655	FAM160B2	Q86V87	743 aa		13.73	□□□□□ -0.21
SYNE1-222	ENST00000474655	PLIN2	Q99541	437 aa		13.73	□□□□□ -0.21
SYNE1-222	ENST00000474655	TMX1	Q9H3N1	280 aa		13.73	□□□□□ -0.21
SYNE1-222	ENST00000474655	ADD3	Q9UEY8	706 aa	Known RBP	13.73	□□□□□ -0.21
SYNE1-222	ENST00000474655	PCDHA12	Q9UN75	941 aa		13.73	□□□□□ -0.21
SYNE1-222	ENST00000474655	CTNND2	Q9UQB3	1225 aa		13.73	□□□□□ -0.21
SYNE1-222	ENST00000474655	GDA	Q9Y2T3	454 aa		13.73	□□□□□ -0.21
SYNE1-222	ENST00000474655	POTEM	A6NI47	508 aa		13.73	□□□□□ -0.21
SYNE1-222	ENST00000474655	EGFR	P00533	1210 aa		13.73	□□□□□ -0.21
SYNE1-222	ENST00000474655	CYP3A4	P08684	503 aa		13.73	□□□□□ -0.21
SYNE1-222	ENST00000474655	PBX1	P40424	430 aa		13.73	□□□□□ -0.21
SYNE1-222	ENST00000474655	PPP1R2	P41236	205 aa		13.73	□□□□□ -0.21
SYNE1-222	ENST00000474655	PRELP	P51888	382 aa		13.73	□□□□□ -0.21
SYNE1-222	ENST00000474655	SNAP25	P60880	206 aa		13.73	□□□□□ -0.21
SYNE1-222	ENST00000474655	R3HDM1	Q15032	1099 aa	Known RBP	13.73	□□□□□ -0.21
SYNE1-222	ENST00000474655	FAM83B	Q5T0W9	1011 aa		13.73	□□□□□ -0.21
SYNE1-222	ENST00000474655	KRT79	Q5XKE5	535 aa		13.73	□□□□□ -0.21
SYNE1-222	ENST00000474655	SV2B	Q7L1I2	683 aa		13.73	□□□□□ -0.21
SYNE1-222	ENST00000474655	SLFN12	Q8IYM2	578 aa		13.73	□□□□□ -0.21
SYNE1-222	ENST00000474655	NELFB	Q8WX92	580 aa		13.73	□□□□□ -0.21
SYNE1-222	ENST00000474655	DEFB129	Q9H1M3	183 aa		13.73	□□□□□ -0.21
SYNE1-222	ENST00000474655	LIMA1	Q9UHB6	759 aa	Known RBP	13.73	□□□□□ -0.21
SYNE1-222	ENST00000474655	PVALEF	A0A1B0GWK0	134 aa		13.72	□□□□□ -0.21
SYNE1-222	ENST00000474655		H7C1D1	291 aa		13.72	□□□□□ -0.21
SYNE1-222	ENST00000474655	SPAG1	Q07617	926 aa		13.72	□□□□□ -0.21
SYNE1-222	ENST00000474655	USH1G	Q495M9	461 aa		13.72	□□□□□ -0.21
SYNE1-222	ENST00000474655	HSP90AA4P	Q58FG1	418 aa		13.72	□□□□□ -0.21
SYNE1-222	ENST00000474655	SPECC1L	Q69YQ0	1117 aa		13.72	□□□□□ -0.21
SYNE1-222	ENST00000474655	CCDC112	Q8NEF3	446 aa		13.72	□□□□□ -0.21
SYNE1-222	ENST00000474655	ETNPPL	Q8TBG4	499 aa		13.72	□□□□□ -0.21
SYNE1-222	ENST00000474655	LARP4B	Q92615	738 aa	Known RBP	13.72	□□□□□ -0.21
SYNE1-222	ENST00000474655	DHTKD1	Q96HY7	919 aa	Predicted RBP	13.72	□□□□□ -0.21
SYNE1-222	ENST00000474655	NUDT12	Q9BQG2	462 aa		13.72	□□□□□ -0.21
SYNE1-222	ENST00000474655	FEM1B	Q9UK73	627 aa		13.72	□□□□□ -0.21
SYNE1-222	ENST00000474655	BCS1L	Q9Y276	419 aa		13.72	□□□□□ -0.21
SYNE1-222	ENST00000474655	DOCK1	Q14185	1865 aa		13.72	□□□□□ -0.21
SYNE1-222	ENST00000474655	SNX29	Q8TEQ0	813 aa		13.71	□□□□□ -0.21
SYNE1-222	ENST00000474655	RAD54L	Q92698	747 aa		13.71	□□□□□ -0.21
SYNE1-222	ENST00000474655	CCDC47	Q96A33	483 aa	Known RBP	13.71	□□□□□ -0.21
SYNE1-222	ENST00000474655	LENG9	Q96B70	501 aa		13.71	□□□□□ -0.21
SYNE1-222	ENST00000474655	LRRC27	Q9C0I9	530 aa		13.71	□□□□□ -0.21
SYNE1-222	ENST00000474655	NT5C3A	Q9H0P0	336 aa		13.71	□□□□□ -0.21
SYNE1-222	ENST00000474655	R3HCC1	Q9Y3T6	440 aa	Known RBP	13.71	□□□□□ -0.21
SYNE1-222	ENST00000474655	PARP14	Q460N5	1801 aa		13.71	□□□□□ -0.21
SYNE1-222	ENST00000474655	KDM3A	Q9Y4C1	1321 aa		13.71	□□□□□ -0.22
SYNE1-222	ENST00000474655	SPDYE3	A6NKU9	549 aa		13.71	□□□□□ -0.22
SYNE1-222	ENST00000474655	CTNND1	O60716	968 aa	Known RBP	13.71	□□□□□ -0.22
SYNE1-222	ENST00000474655	GMPS	P49915	693 aa	Predicted RBP	13.71	□□□□□ -0.22
SYNE1-222	ENST00000474655	EHHADH	Q08426	723 aa		13.71	□□□□□ -0.22
SYNE1-222	ENST00000474655	SPIRE1	Q08AE8	756 aa		13.71	□□□□□ -0.22
SYNE1-222	ENST00000474655	STIM1	Q13586	685 aa		13.71	□□□□□ -0.22
SYNE1-222	ENST00000474655	MICALL2	Q8IY33	904 aa		13.71	□□□□□ -0.22
SYNE1-222	ENST00000474655	CDK5RAP3	Q96JB5	506 aa		13.71	□□□□□ -0.22
SYNE1-222	ENST00000474655	PRIMPOL	Q96LW4	560 aa		13.71	□□□□□ -0.22
SYNE1-222	ENST00000474655	CNOT7	Q9UIV1	285 aa	Known RBP	13.71	□□□□□ -0.22
SYNE1-222	ENST00000474655	MYMK	A6NI61	221 aa		13.7	□□□□□ -0.22
SYNE1-222	ENST00000474655	PSMA7	O14818	248 aa		13.7	□□□□□ -0.22
SYNE1-222	ENST00000474655	NRDC	O43847	1150 aa		13.7	□□□□□ -0.22
SYNE1-222	ENST00000474655	PDE4D	Q08499	809 aa		13.7	□□□□□ -0.22
SYNE1-222	ENST00000474655	TCP11X2	Q5H9J9	407 aa		13.7	□□□□□ -0.22
SYNE1-222	ENST00000474655	DNTTIP2	Q5QJE6	756 aa	Known RBP	13.7	□□□□□ -0.22
SYNE1-222	ENST00000474655	TTI2	Q6NXR4	508 aa		13.7	□□□□□ -0.22
SYNE1-222	ENST00000474655	UNC13D	Q70J99	1090 aa		13.7	□□□□□ -0.22
SYNE1-222	ENST00000474655	IRF2BP1	Q8IU81	584 aa		13.7	□□□□□ -0.22
SYNE1-222	ENST00000474655	FAM20A	Q96MK3	541 aa		13.7	□□□□□ -0.22
SYNE1-222	ENST00000474655	GLIS2	Q9BZE0	524 aa	Predicted RBP	13.7	□□□□□ -0.22
SYNE1-222	ENST00000474655	KIAA1683	Q9H0B3	1180 aa		13.7	□□□□□ -0.22
SYNE1-222	ENST00000474655	FRMD4A	Q9P2Q2	1039 aa	Predicted RBP	13.7	□□□□□ -0.22
SYNE1-222	ENST00000474655	PPP1R1B	Q9UD71	204 aa	Predicted RBP	13.7	□□□□□ -0.22
SYNE1-222	ENST00000474655	SBF1	O95248	1867 aa		13.69	□□□□□ -0.22
SYNE1-222	ENST00000474655	PSD	A5PKW4	1024 aa	Predicted RBP	13.69	□□□□□ -0.22
SYNE1-222	ENST00000474655	FAM86B1	E9PN63	330 aa		13.69	□□□□□ -0.22
SYNE1-222	ENST00000474655	FAM86B2	P0C5J1	330 aa		13.69	□□□□□ -0.22
SYNE1-222	ENST00000474655	ASIC1	P78348	528 aa		13.69	□□□□□ -0.22
SYNE1-222	ENST00000474655	RASSF7	Q02833	373 aa		13.69	□□□□□ -0.22
SYNE1-222	ENST00000474655	MCM6	Q14566	821 aa		13.69	□□□□□ -0.22
SYNE1-222	ENST00000474655	KRT31	Q15323	416 aa		13.69	□□□□□ -0.22
SYNE1-222	ENST00000474655	ECM1	Q16610	540 aa		13.69	□□□□□ -0.22
SYNE1-222	ENST00000474655	TPD52L1	Q16890	204 aa	Predicted RBP	13.69	□□□□□ -0.22
SYNE1-222	ENST00000474655	FILIP1L	Q4L180	1135 aa		13.69	□□□□□ -0.22
SYNE1-222	ENST00000474655	KCNK18	Q7Z418	384 aa		13.69	□□□□□ -0.22
SYNE1-222	ENST00000474655	TMEM139	Q8IV31	216 aa		13.69	□□□□□ -0.22
SYNE1-222	ENST00000474655	CCAR2	Q8N163	923 aa	Known RBP	13.69	□□□□□ -0.22
SYNE1-222	ENST00000474655	LPAR1	Q92633	364 aa		13.69	□□□□□ -0.22
SYNE1-222	ENST00000474655	THAP9	Q9H5L6	903 aa		13.69	□□□□□ -0.22
SYNE1-222	ENST00000474655	EXOC1	Q9NV70	894 aa		13.69	□□□□□ -0.22
SYNE1-222	ENST00000474655	ABCB11	O95342	1321 aa		13.69	□□□□□ -0.22
SYNE1-222	ENST00000474655	ITIH6	Q6UXX5	1313 aa		13.69	□□□□□ -0.22
SYNE1-222	ENST00000474655	WDR46	O15213	610 aa	Known RBP	13.68	□□□□□ -0.22
SYNE1-222	ENST00000474655	TEX33	O43247	280 aa		13.68	□□□□□ -0.22

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