RNA–Protein interactions for RNA: ENST00000474432.1

COL7A1-209, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 728 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-209ENST00000474432 TRPV6Q9H1D0 765 aa21.62■■□□□ 1.05
COL7A1-209ENST00000474432 UMODL1Q5DID0 1318 aa21.61■■□□□ 1.05
COL7A1-209ENST00000474432 A6NJR5 290 aa21.61■■□□□ 1.05
COL7A1-209ENST00000474432 NKRFO15226 690 aaKnown RBP eCLIP21.61■■□□□ 1.05
COL7A1-209ENST00000474432 WTAPQ15007 396 aa21.61■■□□□ 1.05
COL7A1-209ENST00000474432 PPP2R5BQ15173 497 aa21.61■■□□□ 1.05
COL7A1-209ENST00000474432 RALYLQ86SE5 291 aaKnown RBP21.61■■□□□ 1.05
COL7A1-209ENST00000474432 OR6J1Q8NGC5 347 aa21.61■■□□□ 1.05
COL7A1-209ENST00000474432 NSUN6Q8TEA1 469 aaKnown RBP21.61■■□□□ 1.05
COL7A1-209ENST00000474432 GUCD1Q96NT3 240 aa21.61■■□□□ 1.05
COL7A1-209ENST00000474432 PIGSQ96S52 555 aa21.61■■□□□ 1.05
COL7A1-209ENST00000474432 RMDN3Q96TC7 470 aa21.61■■□□□ 1.05
COL7A1-209ENST00000474432 BUD13Q9BRD0 619 aaKnown RBP eCLIP21.61■■□□□ 1.05
COL7A1-209ENST00000474432 PPP1R12CQ9BZL4 782 aa21.61■■□□□ 1.05
COL7A1-209ENST00000474432 TLR3O15455 904 aaKnown RBP21.6■■□□□ 1.05
COL7A1-209ENST00000474432 B4GALT4O60513 344 aa21.6■■□□□ 1.05
COL7A1-209ENST00000474432 TXNP10599 105 aaKnown RBP21.6■■□□□ 1.05
COL7A1-209ENST00000474432 CSF2RAP15509 400 aa21.6■■□□□ 1.05
COL7A1-209ENST00000474432 CYP2C18P33260 490 aa21.6■■□□□ 1.05
COL7A1-209ENST00000474432 SMAD3P84022 425 aaKnown RBP21.6■■□□□ 1.05
COL7A1-209ENST00000474432 NECTIN1Q15223 517 aa21.6■■□□□ 1.05
COL7A1-209ENST00000474432 TMEM67Q5HYA8 995 aa21.6■■□□□ 1.05
COL7A1-209ENST00000474432 IWS1Q96ST2 819 aa21.6■■□□□ 1.05
COL7A1-209ENST00000474432 MPHOSPH6Q99547 160 aaKnown RBP21.6■■□□□ 1.05
COL7A1-209ENST00000474432 SEZ6LQ9BYH1 1024 aa21.6■■□□□ 1.05
COL7A1-209ENST00000474432 LY9Q9HBG7 655 aa21.6■■□□□ 1.05
COL7A1-209ENST00000474432 POLR3EQ9NVU0 708 aa21.6■■□□□ 1.05
COL7A1-209ENST00000474432 CFBP00751 764 aa21.59■■□□□ 1.05
COL7A1-209ENST00000474432 CPT1AP50416 773 aa21.59■■□□□ 1.05
COL7A1-209ENST00000474432 TMEM240Q5SV17 173 aa21.59■■□□□ 1.05
COL7A1-209ENST00000474432 RASIP1Q5U651 963 aa21.59■■□□□ 1.05
COL7A1-209ENST00000474432 VWCEQ96DN2 955 aa21.59■■□□□ 1.05
COL7A1-209ENST00000474432 RNPC3Q96LT9 517 aaKnown RBP21.59■■□□□ 1.05
COL7A1-209ENST00000474432 ALDH8A1Q9H2A2 487 aaPredicted RBP21.59■■□□□ 1.05
COL7A1-209ENST00000474432 PXMP2Q9NR77 195 aa21.59■■□□□ 1.05
COL7A1-209ENST00000474432 STXBP5LQ9Y2K9 1186 aa21.59■■□□□ 1.05
COL7A1-209ENST00000474432 PCDHA1Q9Y5I3 950 aa21.59■■□□□ 1.05
COL7A1-209ENST00000474432 ERICH2A1L162 156 aa21.58■■□□□ 1.05
COL7A1-209ENST00000474432 B4DLN1 442 aa21.58■■□□□ 1.05
COL7A1-209ENST00000474432 SLC27A2O14975 620 aa21.58■■□□□ 1.05
COL7A1-209ENST00000474432 MYL3P08590 195 aa21.58■■□□□ 1.05
COL7A1-209ENST00000474432 EIF2AK2P19525 551 aaKnown RBP21.58■■□□□ 1.05
COL7A1-209ENST00000474432 MRPL12P52815 198 aaKnown RBP21.58■■□□□ 1.05
COL7A1-209ENST00000474432 TTLL4Q14679 1199 aa21.58■■□□□ 1.05
COL7A1-209ENST00000474432 BMP2KLQ5H9B9 411 aa21.58■■□□□ 1.05
COL7A1-209ENST00000474432 CENPQQ7L2Z9 268 aaPredicted RBP21.58■■□□□ 1.05
COL7A1-209ENST00000474432 HOMER1Q86YM7 354 aa21.58■■□□□ 1.05
COL7A1-209ENST00000474432 NOC4LQ9BVI4 516 aaKnown RBP21.58■■□□□ 1.05
COL7A1-209ENST00000474432 RGS20O76081 388 aa21.57■■□□□ 1.04
COL7A1-209ENST00000474432 NR3C2P08235 984 aa21.57■■□□□ 1.04
COL7A1-209ENST00000474432 ARHGAP1Q07960 439 aa21.57■■□□□ 1.04
COL7A1-209ENST00000474432 PPIGQ13427 754 aaKnown RBP eCLIP21.57■■□□□ 1.047e-12■■■■□ 25.6
COL7A1-209ENST00000474432 STXBP2Q15833 593 aa21.57■■□□□ 1.04
COL7A1-209ENST00000474432 LY6KQ17RY6 165 aa21.57■■□□□ 1.04
COL7A1-209ENST00000474432 SEPT14Q6ZU15 432 aa21.57■■□□□ 1.04
COL7A1-209ENST00000474432 PPP1R13LQ8WUF5 828 aa21.57■■□□□ 1.04
COL7A1-209ENST00000474432 FAM161BQ96MY7 647 aa21.57■■□□□ 1.04
COL7A1-209ENST00000474432 MTG1Q9BT17 334 aaPredicted RBP21.57■■□□□ 1.04
COL7A1-209ENST00000474432 WNT8AQ9H1J5 351 aa21.57■■□□□ 1.04
COL7A1-209ENST00000474432 TTYH1Q9H313 450 aaPredicted RBP21.57■■□□□ 1.04
COL7A1-209ENST00000474432 PRC1O43663 620 aa21.56■■□□□ 1.04
COL7A1-209ENST00000474432 ACRP10323 421 aa21.56■■□□□ 1.04
COL7A1-209ENST00000474432 HOXA13P31271 388 aaPredicted RBP21.56■■□□□ 1.04
COL7A1-209ENST00000474432 SART3Q15020 963 aaKnown RBP21.56■■□□□ 1.04
COL7A1-209ENST00000474432 NBPF20Q3BBV1 942 aa21.56■■□□□ 1.04
COL7A1-209ENST00000474432 ARHGEF16Q5VV41 709 aa21.56■■□□□ 1.04
COL7A1-209ENST00000474432 CREB3L3Q68CJ9 461 aa21.56■■□□□ 1.04
COL7A1-209ENST00000474432 TMEM199Q8N511 208 aa21.56■■□□□ 1.04
COL7A1-209ENST00000474432 MAP3K14Q99558 947 aa21.56■■□□□ 1.04
COL7A1-209ENST00000474432 PDCD2LQ9BRP1 358 aa21.56■■□□□ 1.04
COL7A1-209ENST00000474432 MTA3Q9BTC8 594 aa21.56■■□□□ 1.04
COL7A1-209ENST00000474432 MYL10Q9BUA6 226 aa21.56■■□□□ 1.04
COL7A1-209ENST00000474432 SEMA6BQ9H3T3 888 aa21.56■■□□□ 1.04
COL7A1-209ENST00000474432 HIPK3Q9H422 1215 aa21.56■■□□□ 1.04
COL7A1-209ENST00000474432 TRMT13Q9NUP7 481 aaKnown RBP21.56■■□□□ 1.04
COL7A1-209ENST00000474432 MAP3K20Q9NYL2 800 aaKnown RBP21.56■■□□□ 1.04
COL7A1-209ENST00000474432 DDX41Q9UJV9 622 aaKnown RBP21.56■■□□□ 1.04
COL7A1-209ENST00000474432 MYH7BA7E2Y1 1941 aa21.56■■□□□ 1.04
COL7A1-209ENST00000474432 PNMA6FA0A0J9YX94 578 aa21.55■■□□□ 1.04
COL7A1-209ENST00000474432 SH2B2O14492 632 aaPredicted RBP21.55■■□□□ 1.04
COL7A1-209ENST00000474432 EIF3JO75822 258 aaKnown RBP21.55■■□□□ 1.04
COL7A1-209ENST00000474432 ZNF365Q70YC5 407 aa21.55■■□□□ 1.04
COL7A1-209ENST00000474432 CATIPQ7Z7H3 387 aa21.55■■□□□ 1.04
COL7A1-209ENST00000474432 ZNF654Q8IZM8 581 aa21.55■■□□□ 1.04
COL7A1-209ENST00000474432 SAMD3Q8N6K7 520 aa21.55■■□□□ 1.04
COL7A1-209ENST00000474432 IL31RAQ8NI17 732 aa21.55■■□□□ 1.04
COL7A1-209ENST00000474432 AFG1LQ8WV93 481 aa21.55■■□□□ 1.04
COL7A1-209ENST00000474432 KPNA6O60684 536 aa21.54■■□□□ 1.04
COL7A1-209ENST00000474432 ZNF697Q5TEC3 545 aa21.54■■□□□ 1.04
COL7A1-209ENST00000474432 VSIG10LQ86VR7 867 aa21.54■■□□□ 1.04
COL7A1-209ENST00000474432 IL23AQ9NPF7 189 aa21.54■■□□□ 1.04
COL7A1-209ENST00000474432 CDH23Q9H251 3354 aa21.53■■□□□ 1.04
COL7A1-209ENST00000474432 DDAH1O94760 285 aa21.53■■□□□ 1.04
COL7A1-209ENST00000474432 GH1P01241 217 aa21.53■■□□□ 1.04
COL7A1-209ENST00000474432 MMP3P08254 477 aa21.53■■□□□ 1.04
COL7A1-209ENST00000474432 CYP2C9P11712 490 aa21.53■■□□□ 1.04
COL7A1-209ENST00000474432 MCM5P33992 734 aa21.53■■□□□ 1.04
COL7A1-209ENST00000474432 CCL23P55773 120 aa21.53■■□□□ 1.04
COL7A1-209ENST00000474432 PGM5Q15124 567 aa21.53■■□□□ 1.04
COL7A1-209ENST00000474432 KAT2BQ92831 832 aa21.53■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms