RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 OPLAHO14841 1288 aa21.92■■□□□ 1.1
CCDC88B-206ENST00000473405 SGSM2O43147 1006 aa21.92■■□□□ 1.1
CCDC88B-206ENST00000473405 DHX16O60231 1041 aaKnown RBP21.92■■□□□ 1.1
CCDC88B-206ENST00000473405 FBXO11Q86XK2 927 aa21.92■■□□□ 1.1
CCDC88B-206ENST00000473405 COPS5Q92905 334 aa21.92■■□□□ 1.1
CCDC88B-206ENST00000473405 MTMR8Q96EF0 704 aa21.92■■□□□ 1.1
CCDC88B-206ENST00000473405 TAAR1Q96RJ0 339 aa21.92■■□□□ 1.1
CCDC88B-206ENST00000473405 CDX2Q99626 313 aaPredicted RBP21.92■■□□□ 1.1
CCDC88B-206ENST00000473405 NOC4LQ9BVI4 516 aaKnown RBP21.92■■□□□ 1.1
CCDC88B-206ENST00000473405 ALDH8A1Q9H2A2 487 aaPredicted RBP21.92■■□□□ 1.1
CCDC88B-206ENST00000473405 VAT1LQ9HCJ6 419 aa21.92■■□□□ 1.1
CCDC88B-206ENST00000473405 POLR3EQ9NVU0 708 aa21.92■■□□□ 1.1
CCDC88B-206ENST00000473405 U3KPZ7 1027 aaPredicted RBP21.92■■□□□ 1.1
CCDC88B-206ENST00000473405 SCN5AQ14524 2016 aa21.91■■□□□ 1.1
CCDC88B-206ENST00000473405 NKRFO15226 690 aaKnown RBP eCLIP21.91■■□□□ 1.1
CCDC88B-206ENST00000473405 PPP1R11O60927 126 aaPredicted RBP21.91■■□□□ 1.1
CCDC88B-206ENST00000473405 ACRP10323 421 aa21.91■■□□□ 1.1
CCDC88B-206ENST00000473405 SLC35G1Q2M3R5 365 aa21.91■■□□□ 1.1
CCDC88B-206ENST00000473405 STOX1Q6ZVD7 989 aa21.91■■□□□ 1.1
CCDC88B-206ENST00000473405 WNT8AQ9H1J5 351 aa21.91■■□□□ 1.1
CCDC88B-206ENST00000473405 SENP2Q9HC62 589 aa21.91■■□□□ 1.1
CCDC88B-206ENST00000473405 A6NJR5 290 aa21.9■■□□□ 1.1
CCDC88B-206ENST00000473405 B4DLN1 442 aa21.9■■□□□ 1.1
CCDC88B-206ENST00000473405 KLRF2D3W0D1 207 aa21.9■■□□□ 1.1
CCDC88B-206ENST00000473405 MYL3P08590 195 aa21.9■■□□□ 1.1
CCDC88B-206ENST00000473405 TXNP10599 105 aaKnown RBP21.9■■□□□ 1.1
CCDC88B-206ENST00000473405 MRPL12P52815 198 aaKnown RBP21.9■■□□□ 1.1
CCDC88B-206ENST00000473405 TRDNQ13061 729 aa21.9■■□□□ 1.1
CCDC88B-206ENST00000473405 CCDC62Q6P9F0 684 aa21.9■■□□□ 1.1
CCDC88B-206ENST00000473405 PSRC1Q6PGN9 363 aaPredicted RBP21.9■■□□□ 1.1
CCDC88B-206ENST00000473405 MCF2L2Q86YR7 1114 aa21.9■■□□□ 1.1
CCDC88B-206ENST00000473405 NSUN6Q8TEA1 469 aaKnown RBP21.9■■□□□ 1.1
CCDC88B-206ENST00000473405 IL23AQ9NPF7 189 aa21.9■■□□□ 1.1
CCDC88B-206ENST00000473405 MRPL11Q9Y3B7 192 aaKnown RBP21.9■■□□□ 1.1
CCDC88B-206ENST00000473405 TMEM265A0A087WTH1 108 aa21.89■■□□□ 1.09
CCDC88B-206ENST00000473405 HSFX4A0A1B0GTS1 333 aaPredicted RBP21.89■■□□□ 1.09
CCDC88B-206ENST00000473405 HSFX3A0A1B0GWH4 333 aaPredicted RBP21.89■■□□□ 1.09
CCDC88B-206ENST00000473405 PALM3A6NDB9 673 aaPredicted RBP21.89■■□□□ 1.09
CCDC88B-206ENST00000473405 E7EWF7 191 aa21.89■■□□□ 1.09
CCDC88B-206ENST00000473405 DNAJB2P25686 324 aa21.89■■□□□ 1.09
CCDC88B-206ENST00000473405 GHRHRQ02643 423 aa21.89■■□□□ 1.09
CCDC88B-206ENST00000473405 TTLL4Q14679 1199 aa21.89■■□□□ 1.09
CCDC88B-206ENST00000473405 ZNF365Q70YC5 407 aa21.89■■□□□ 1.09
CCDC88B-206ENST00000473405 RMDN3Q96TC7 470 aa21.89■■□□□ 1.09
CCDC88B-206ENST00000473405 MTG1Q9BT17 334 aaPredicted RBP21.89■■□□□ 1.09
CCDC88B-206ENST00000473405 AMNQ9BXJ7 453 aa21.89■■□□□ 1.09
CCDC88B-206ENST00000473405 TRMT13Q9NUP7 481 aaKnown RBP21.89■■□□□ 1.09
CCDC88B-206ENST00000473405 MYH7BA7E2Y1 1941 aa21.88■■□□□ 1.09
CCDC88B-206ENST00000473405 ZBTB5O15062 677 aa21.88■■□□□ 1.09
CCDC88B-206ENST00000473405 HSD17B4P51659 736 aa21.88■■□□□ 1.09
CCDC88B-206ENST00000473405 GRM4Q14833 912 aa21.88■■□□□ 1.09
CCDC88B-206ENST00000473405 VWCEQ96DN2 955 aa21.88■■□□□ 1.09
CCDC88B-206ENST00000473405 IWS1Q96ST2 819 aa21.88■■□□□ 1.09
CCDC88B-206ENST00000473405 CCL23P55773 120 aa21.87■■□□□ 1.09
CCDC88B-206ENST00000473405 BRDTQ58F21 947 aaPredicted RBP21.87■■□□□ 1.09
CCDC88B-206ENST00000473405 PPP1R13LQ8WUF5 828 aa21.87■■□□□ 1.09
CCDC88B-206ENST00000473405 MYLIPQ8WY64 445 aa21.87■■□□□ 1.09
CCDC88B-206ENST00000473405 MAP4K1Q92918 833 aa21.87■■□□□ 1.09
CCDC88B-206ENST00000473405 GRXCR1A8MXD5 290 aa21.86■■□□□ 1.09
CCDC88B-206ENST00000473405 IFIT3O14879 490 aaKnown RBP21.86■■□□□ 1.09
CCDC88B-206ENST00000473405 CFBP00751 764 aa21.86■■□□□ 1.09
CCDC88B-206ENST00000473405 EIF2AK2P19525 551 aaKnown RBP21.86■■□□□ 1.09
CCDC88B-206ENST00000473405 ANTXR2P58335 489 aa21.86■■□□□ 1.09
CCDC88B-206ENST00000473405 ARHGAP1Q07960 439 aa21.86■■□□□ 1.09
CCDC88B-206ENST00000473405 TROAPQ12815 778 aa21.86■■□□□ 1.09
CCDC88B-206ENST00000473405 STXBP2Q15833 593 aa21.86■■□□□ 1.09
CCDC88B-206ENST00000473405 LY6KQ17RY6 165 aa21.86■■□□□ 1.09
CCDC88B-206ENST00000473405 NBPF20Q3BBV1 942 aa21.86■■□□□ 1.09
CCDC88B-206ENST00000473405 SEPT14Q6ZU15 432 aa21.86■■□□□ 1.09
CCDC88B-206ENST00000473405 CHST3Q7LGC8 479 aa21.86■■□□□ 1.09
CCDC88B-206ENST00000473405 RALYLQ86SE5 291 aaKnown RBP21.86■■□□□ 1.09
CCDC88B-206ENST00000473405 NCOA7Q8NI08 942 aa21.86■■□□□ 1.09
CCDC88B-206ENST00000473405 HERVK_113Q902F9 699 aa21.86■■□□□ 1.09
CCDC88B-206ENST00000473405 GPHNQ9NQX3 736 aaPredicted RBP21.86■■□□□ 1.09
CCDC88B-206ENST00000473405 PXMP2Q9NR77 195 aa21.86■■□□□ 1.09
CCDC88B-206ENST00000473405 CXXC1Q9P0U4 656 aaPredicted RBP21.86■■□□□ 1.09
CCDC88B-206ENST00000473405 XIRP2A4UGR9 3374 aa21.86■■□□□ 1.09
CCDC88B-206ENST00000473405 MUC3AQ02505 3323 aa21.86■■□□□ 1.09
CCDC88B-206ENST00000473405 CYTH3O43739 400 aa21.85■■□□□ 1.09
CCDC88B-206ENST00000473405 KPNA6O60684 536 aa21.85■■□□□ 1.09
CCDC88B-206ENST00000473405 CYP2C9P11712 490 aa21.85■■□□□ 1.09
CCDC88B-206ENST00000473405 PBX2P40425 430 aa21.85■■□□□ 1.09
CCDC88B-206ENST00000473405 ARHGEF16Q5VV41 709 aa21.85■■□□□ 1.09
CCDC88B-206ENST00000473405 NFRKBQ6P4R8 1299 aa21.85■■□□□ 1.09
CCDC88B-206ENST00000473405 MB21D2Q8IYB1 491 aaPredicted RBP21.85■■□□□ 1.09
CCDC88B-206ENST00000473405 PBX4Q9BYU1 374 aa21.85■■□□□ 1.09
CCDC88B-206ENST00000473405 RIOX1Q9H6W3 641 aa21.85■■□□□ 1.09
CCDC88B-206ENST00000473405 PCDHA1Q9Y5I3 950 aa21.85■■□□□ 1.09
CCDC88B-206ENST00000473405 RBM8AQ9Y5S9 174 aaKnown RBP21.85■■□□□ 1.09
CCDC88B-206ENST00000473405 MMP3P08254 477 aa21.84■■□□□ 1.09
CCDC88B-206ENST00000473405 SUPT20HL2P0C7V6 817 aa21.84■■□□□ 1.09
CCDC88B-206ENST00000473405 WTAPQ15007 396 aa21.84■■□□□ 1.09
CCDC88B-206ENST00000473405 HOMER1Q86YM7 354 aa21.84■■□□□ 1.09
CCDC88B-206ENST00000473405 AFG1LQ8WV93 481 aa21.84■■□□□ 1.09
CCDC88B-206ENST00000473405 TIFAQ96CG3 184 aa21.84■■□□□ 1.09
CCDC88B-206ENST00000473405 SCLYQ96I15 445 aa21.84■■□□□ 1.09
CCDC88B-206ENST00000473405 PIGSQ96S52 555 aa21.84■■□□□ 1.09
CCDC88B-206ENST00000473405 TRIP12Q14669 1992 aaPredicted RBP21.83■■□□□ 1.09
CCDC88B-206ENST00000473405 ERICH2A1L162 156 aa21.83■■□□□ 1.09
CCDC88B-206ENST00000473405 EIF3JO75822 258 aaKnown RBP21.83■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms