RNA–Protein interactions for RNA: ENST00000473191.1

USP40-212, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 590 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-212ENST00000473191 MB21D2Q8IYB1 491 aaPredicted RBP19.43■□□□□ 0.7
USP40-212ENST00000473191 NCOA7Q8NI08 942 aa19.43■□□□□ 0.7
USP40-212ENST00000473191 PIGSQ96S52 555 aa19.43■□□□□ 0.7
USP40-212ENST00000473191 LSG1Q9H089 658 aaKnown RBP19.43■□□□□ 0.7
USP40-212ENST00000473191 ZEB2O60315 1214 aa19.42■□□□□ 0.7
USP40-212ENST00000473191 CABYRO75952 493 aa19.42■□□□□ 0.7
USP40-212ENST00000473191 CFBP00751 764 aa19.42■□□□□ 0.7
USP40-212ENST00000473191 TXNP10599 105 aaKnown RBP19.42■□□□□ 0.7
USP40-212ENST00000473191 EIF2AK2P19525 551 aaKnown RBP19.42■□□□□ 0.7
USP40-212ENST00000473191 TROAPQ12815 778 aa19.42■□□□□ 0.7
USP40-212ENST00000473191 LY6KQ17RY6 165 aa19.42■□□□□ 0.7
USP40-212ENST00000473191 TMEM240Q5SV17 173 aa19.42■□□□□ 0.7
USP40-212ENST00000473191 CCDC62Q6P9F0 684 aa19.42■□□□□ 0.7
USP40-212ENST00000473191 IGDCC4Q8TDY8 1250 aa19.42■□□□□ 0.7
USP40-212ENST00000473191 VWCEQ96DN2 955 aa19.42■□□□□ 0.7
USP40-212ENST00000473191 ZFP91Q96JP5 570 aaPredicted RBP19.42■□□□□ 0.7
USP40-212ENST00000473191 MYL10Q9BUA6 226 aa19.42■□□□□ 0.7
USP40-212ENST00000473191 TRMT13Q9NUP7 481 aaKnown RBP19.42■□□□□ 0.7
USP40-212ENST00000473191 STXBP5LQ9Y2K9 1186 aa19.42■□□□□ 0.7
USP40-212ENST00000473191 MRPL11Q9Y3B7 192 aaKnown RBP19.42■□□□□ 0.7
USP40-212ENST00000473191 GRXCR1A8MXD5 290 aa19.41■□□□□ 0.7
USP40-212ENST00000473191 ZBTB5O15062 677 aa19.41■□□□□ 0.7
USP40-212ENST00000473191 TLR3O15455 904 aaKnown RBP19.41■□□□□ 0.7
USP40-212ENST00000473191 HOXA13P31271 388 aaPredicted RBP19.41■□□□□ 0.7
USP40-212ENST00000473191 CCL23P55773 120 aa19.41■□□□□ 0.7
USP40-212ENST00000473191 SMAD3P84022 425 aaKnown RBP19.41■□□□□ 0.7
USP40-212ENST00000473191 WTAPQ15007 396 aa19.41■□□□□ 0.7
USP40-212ENST00000473191 ZNF697Q5TEC3 545 aa19.41■□□□□ 0.7
USP40-212ENST00000473191 RALYLQ86SE5 291 aaKnown RBP19.41■□□□□ 0.7
USP40-212ENST00000473191 SCFD2Q8WU76 684 aa19.41■□□□□ 0.7
USP40-212ENST00000473191 RMDN3Q96TC7 470 aa19.41■□□□□ 0.7
USP40-212ENST00000473191 AMNQ9BXJ7 453 aa19.41■□□□□ 0.7
USP40-212ENST00000473191 WNT8AQ9H1J5 351 aa19.41■□□□□ 0.7
USP40-212ENST00000473191 ALDH8A1Q9H2A2 487 aaPredicted RBP19.41■□□□□ 0.7
USP40-212ENST00000473191 SEMA6BQ9H3T3 888 aa19.41■□□□□ 0.7
USP40-212ENST00000473191 HIPK3Q9H422 1215 aa19.41■□□□□ 0.7
USP40-212ENST00000473191 RIOX1Q9H6W3 641 aa19.41■□□□□ 0.7
USP40-212ENST00000473191 CYP2C9P11712 490 aa19.4■□□□□ 0.7
USP40-212ENST00000473191 HSD17B4P51659 736 aa19.4■□□□□ 0.7
USP40-212ENST00000473191 TMEM67Q5HYA8 995 aa19.4■□□□□ 0.7
USP40-212ENST00000473191 ZNF365Q70YC5 407 aa19.4■□□□□ 0.7
USP40-212ENST00000473191 NSUN6Q8TEA1 469 aaKnown RBP19.4■□□□□ 0.7
USP40-212ENST00000473191 PIBF1Q8WXW3 757 aa19.4■□□□□ 0.7
USP40-212ENST00000473191 NOC4LQ9BVI4 516 aaKnown RBP19.4■□□□□ 0.7
USP40-212ENST00000473191 PXMP2Q9NR77 195 aa19.4■□□□□ 0.7
USP40-212ENST00000473191 KIAA1217Q5T5P2 1943 aa19.39■□□□□ 0.7
USP40-212ENST00000473191 BAZ2BQ9UIF8 2168 aaKnown RBP19.39■□□□□ 0.69
USP40-212ENST00000473191 A6NJR5 290 aa19.39■□□□□ 0.69
USP40-212ENST00000473191 PBX2P40425 430 aa19.39■□□□□ 0.69
USP40-212ENST00000473191 CPT1AP50416 773 aa19.39■□□□□ 0.69
USP40-212ENST00000473191 NBPF20Q3BBV1 942 aa19.39■□□□□ 0.69
USP40-212ENST00000473191 ARHGEF16Q5VV41 709 aa19.39■□□□□ 0.69
USP40-212ENST00000473191 MCF2L2Q86YR7 1114 aa19.39■□□□□ 0.69
USP40-212ENST00000473191 IL31RAQ8NI17 732 aa19.39■□□□□ 0.69
USP40-212ENST00000473191 SCLYQ96I15 445 aa19.39■□□□□ 0.69
USP40-212ENST00000473191 CDX2Q99626 313 aaPredicted RBP19.39■□□□□ 0.69
USP40-212ENST00000473191 ESYT1Q9BSJ8 1104 aa19.39■□□□□ 0.69
USP40-212ENST00000473191 LY9Q9HBG7 655 aa19.39■□□□□ 0.69
USP40-212ENST00000473191 PCDHA1Q9Y5I3 950 aa19.39■□□□□ 0.69
USP40-212ENST00000473191 SORBS3O60504 671 aa19.38■□□□□ 0.69
USP40-212ENST00000473191 RGS20O76081 388 aa19.38■□□□□ 0.69
USP40-212ENST00000473191 ARHGAP1Q07960 439 aa19.38■□□□□ 0.69
USP40-212ENST00000473191 PPIGQ13427 754 aaKnown RBP eCLIP19.38■□□□□ 0.691e-6■■□□□ 13.8
USP40-212ENST00000473191 TTLL4Q14679 1199 aa19.38■□□□□ 0.69
USP40-212ENST00000473191 RASIP1Q5U651 963 aa19.38■□□□□ 0.69
USP40-212ENST00000473191 TMEM199Q8N511 208 aa19.38■□□□□ 0.69
USP40-212ENST00000473191 SLC17A8Q8NDX2 589 aa19.38■□□□□ 0.69
USP40-212ENST00000473191 AFG1LQ8WV93 481 aa19.38■□□□□ 0.69
USP40-212ENST00000473191 MPHOSPH6Q99547 160 aaKnown RBP19.38■□□□□ 0.69
USP40-212ENST00000473191 MTG1Q9BT17 334 aaPredicted RBP19.38■□□□□ 0.69
USP40-212ENST00000473191 POLR3EQ9NVU0 708 aa19.38■□□□□ 0.69
USP40-212ENST00000473191 CXXC1Q9P0U4 656 aaPredicted RBP19.38■□□□□ 0.69
USP40-212ENST00000473191 SCN10AQ9Y5Y9 1956 aa19.38■□□□□ 0.69
USP40-212ENST00000473191 ERICH2A1L162 156 aa19.37■□□□□ 0.69
USP40-212ENST00000473191 SLC27A2O14975 620 aa19.37■□□□□ 0.69
USP40-212ENST00000473191 NKRFO15226 690 aaKnown RBP eCLIP19.37■□□□□ 0.69
USP40-212ENST00000473191 NR3C2P08235 984 aa19.37■□□□□ 0.69
USP40-212ENST00000473191 RXRAP19793 462 aa19.37■□□□□ 0.69
USP40-212ENST00000473191 GHRHRQ02643 423 aa19.37■□□□□ 0.69
USP40-212ENST00000473191 STXBP2Q15833 593 aa19.37■□□□□ 0.69
USP40-212ENST00000473191 FAM47CQ5HY64 1035 aa19.37■□□□□ 0.69
USP40-212ENST00000473191 RAB11FIP4Q86YS3 637 aa19.37■□□□□ 0.69
USP40-212ENST00000473191 GPKOWQ92917 476 aaPredicted RBP eCLIP19.37■□□□□ 0.69
USP40-212ENST00000473191 LRRC2Q9BYS8 371 aa19.37■□□□□ 0.69
USP40-212ENST00000473191 DDX41Q9UJV9 622 aaKnown RBP19.37■□□□□ 0.69
USP40-212ENST00000473191 MMP3P08254 477 aa19.36■□□□□ 0.69
USP40-212ENST00000473191 CHMP4BP1P59074 171 aa19.36■□□□□ 0.69
USP40-212ENST00000473191 NECTIN1Q15223 517 aa19.36■□□□□ 0.69
USP40-212ENST00000473191 CMTR1Q8N1G2 835 aaKnown RBP19.36■□□□□ 0.69
USP40-212ENST00000473191 MYLIPQ8WY64 445 aa19.36■□□□□ 0.69
USP40-212ENST00000473191 IWS1Q96ST2 819 aa19.36■□□□□ 0.69
USP40-212ENST00000473191 PDCD2LQ9BRP1 358 aa19.36■□□□□ 0.69
USP40-212ENST00000473191 IL23AQ9NPF7 189 aa19.36■□□□□ 0.69
USP40-212ENST00000473191 SCN5AQ14524 2016 aa19.35■□□□□ 0.69
USP40-212ENST00000473191 HSFX4A0A1B0GTS1 333 aaPredicted RBP19.35■□□□□ 0.69
USP40-212ENST00000473191 HSFX3A0A1B0GWH4 333 aaPredicted RBP19.35■□□□□ 0.69
USP40-212ENST00000473191 PRC1O43663 620 aa19.35■□□□□ 0.69
USP40-212ENST00000473191 PLEKHA8P1O95397 391 aa19.35■□□□□ 0.69
USP40-212ENST00000473191 MYCLP12524 364 aaPredicted RBP19.35■□□□□ 0.69
USP40-212ENST00000473191 DNAJB2P25686 324 aa19.35■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms