RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 PRDM6Q9NQX0 595 aa19.33■□□□□ 0.68
CCDC28B-204ENST00000469003 U3KPZ7 1027 aaPredicted RBP19.33■□□□□ 0.68
CCDC28B-204ENST00000469003 MYL3P08590 195 aa19.32■□□□□ 0.68
CCDC28B-204ENST00000469003 PTH1RQ03431 593 aa19.32■□□□□ 0.68
CCDC28B-204ENST00000469003 TTLL4Q14679 1199 aa19.32■□□□□ 0.68
CCDC28B-204ENST00000469003 RASIP1Q5U651 963 aa19.32■□□□□ 0.68
CCDC28B-204ENST00000469003 STAG2Q8N3U4 1231 aa19.32■□□□□ 0.68
CCDC28B-204ENST00000469003 NSUN6Q8TEA1 469 aaKnown RBP19.32■□□□□ 0.68
CCDC28B-204ENST00000469003 TAAR1Q96RJ0 339 aa19.32■□□□□ 0.68
CCDC28B-204ENST00000469003 MTG1Q9BT17 334 aaPredicted RBP19.32■□□□□ 0.68
CCDC28B-204ENST00000469003 NOC4LQ9BVI4 516 aaKnown RBP19.32■□□□□ 0.68
CCDC28B-204ENST00000469003 ALDH8A1Q9H2A2 487 aaPredicted RBP19.32■□□□□ 0.68
CCDC28B-204ENST00000469003 VAT1LQ9HCJ6 419 aa19.32■□□□□ 0.68
CCDC28B-204ENST00000469003 IL23AQ9NPF7 189 aa19.32■□□□□ 0.68
CCDC28B-204ENST00000469003 GPHNQ9NQX3 736 aaPredicted RBP19.32■□□□□ 0.68
CCDC28B-204ENST00000469003 UMODL1Q5DID0 1318 aa19.31■□□□□ 0.68
CCDC28B-204ENST00000469003 KPNA6O60684 536 aa19.31■□□□□ 0.68
CCDC28B-204ENST00000469003 CYP21A2P08686 494 aa19.31■□□□□ 0.68
CCDC28B-204ENST00000469003 ACRP10323 421 aa19.31■□□□□ 0.68
CCDC28B-204ENST00000469003 TXNP10599 105 aaKnown RBP19.31■□□□□ 0.68
CCDC28B-204ENST00000469003 DNAJB2P25686 324 aa19.31■□□□□ 0.68
CCDC28B-204ENST00000469003 ZNF365Q70YC5 407 aa19.31■□□□□ 0.68
CCDC28B-204ENST00000469003 COPS5Q92905 334 aa19.31■□□□□ 0.68
CCDC28B-204ENST00000469003 COL20A1Q9P218 1284 aa19.31■□□□□ 0.68
CCDC28B-204ENST00000469003 SCN10AQ9Y5Y9 1956 aa19.31■□□□□ 0.68
CCDC28B-204ENST00000469003 SPTBN5Q9NRC6 3674 aaKnown RBP19.3■□□□□ 0.68
CCDC28B-204ENST00000469003 KIAA1217Q5T5P2 1943 aa19.3■□□□□ 0.68
CCDC28B-204ENST00000469003 A6NJR5 290 aa19.3■□□□□ 0.68
CCDC28B-204ENST00000469003 KLRF2D3W0D1 207 aa19.3■□□□□ 0.68
CCDC28B-204ENST00000469003 ARIH2O95376 493 aa19.3■□□□□ 0.68
CCDC28B-204ENST00000469003 SUPT20HL2P0C7V6 817 aa19.3■□□□□ 0.68
CCDC28B-204ENST00000469003 MTMR8Q96EF0 704 aa19.3■□□□□ 0.68
CCDC28B-204ENST00000469003 IWS1Q96ST2 819 aa19.3■□□□□ 0.68
CCDC28B-204ENST00000469003 RMDN3Q96TC7 470 aa19.3■□□□□ 0.68
CCDC28B-204ENST00000469003 AMNQ9BXJ7 453 aa19.3■□□□□ 0.68
CCDC28B-204ENST00000469003 MAD2L2Q9UI95 211 aa19.3■□□□□ 0.68
CCDC28B-204ENST00000469003 PALM3A6NDB9 673 aaPredicted RBP19.29■□□□□ 0.68
CCDC28B-204ENST00000469003 SGSM2O43147 1006 aa19.29■□□□□ 0.68
CCDC28B-204ENST00000469003 STXBP2Q15833 593 aa19.29■□□□□ 0.68
CCDC28B-204ENST00000469003 CCDC62Q6P9F0 684 aa19.29■□□□□ 0.68
CCDC28B-204ENST00000469003 MYLIPQ8WY64 445 aa19.29■□□□□ 0.68
CCDC28B-204ENST00000469003 HERVK_113Q902F9 699 aa19.29■□□□□ 0.68
CCDC28B-204ENST00000469003 ERICH2A1L162 156 aa19.28■□□□□ 0.68
CCDC28B-204ENST00000469003 IFIT3O14879 490 aaKnown RBP19.28■□□□□ 0.68
CCDC28B-204ENST00000469003 ZBTB5O15062 677 aa19.28■□□□□ 0.68
CCDC28B-204ENST00000469003 FGBP02675 491 aa19.28■□□□□ 0.68
CCDC28B-204ENST00000469003 CCL23P55773 120 aa19.28■□□□□ 0.68
CCDC28B-204ENST00000469003 GHRHRQ02643 423 aa19.28■□□□□ 0.68
CCDC28B-204ENST00000469003 GRM4Q14833 912 aa19.28■□□□□ 0.68
CCDC28B-204ENST00000469003 NBPF20Q3BBV1 942 aa19.28■□□□□ 0.68
CCDC28B-204ENST00000469003 NFRKBQ6P4R8 1299 aa19.28■□□□□ 0.68
CCDC28B-204ENST00000469003 RALYLQ86SE5 291 aaKnown RBP19.28■□□□□ 0.68
CCDC28B-204ENST00000469003 NCOA7Q8NI08 942 aa19.28■□□□□ 0.68
CCDC28B-204ENST00000469003 WNT8AQ9H1J5 351 aa19.28■□□□□ 0.68
CCDC28B-204ENST00000469003 MTIF3Q9H2K0 278 aaKnown RBP19.28■□□□□ 0.68
CCDC28B-204ENST00000469003 TRMT13Q9NUP7 481 aaKnown RBP19.28■□□□□ 0.68
CCDC28B-204ENST00000469003 CDH23Q9H251 3354 aa19.27■□□□□ 0.68
CCDC28B-204ENST00000469003 E7EWF7 191 aa19.27■□□□□ 0.68
CCDC28B-204ENST00000469003 OPLAHO14841 1288 aa19.27■□□□□ 0.68
CCDC28B-204ENST00000469003 CFBP00751 764 aa19.27■□□□□ 0.68
CCDC28B-204ENST00000469003 HSD17B4P51659 736 aa19.27■□□□□ 0.68
CCDC28B-204ENST00000469003 ARHGEF16Q5VV41 709 aa19.27■□□□□ 0.68
CCDC28B-204ENST00000469003 SEPT14Q6ZU15 432 aa19.27■□□□□ 0.68
CCDC28B-204ENST00000469003 TIFAQ96CG3 184 aa19.27■□□□□ 0.68
CCDC28B-204ENST00000469003 PXMP2Q9NR77 195 aa19.27■□□□□ 0.68
CCDC28B-204ENST00000469003 MAP3K20Q9NYL2 800 aaKnown RBP19.27■□□□□ 0.68
CCDC28B-204ENST00000469003 TAF6LQ9Y6J9 622 aa19.27■□□□□ 0.68
CCDC28B-204ENST00000469003 GRXCR1A8MXD5 290 aa19.26■□□□□ 0.67
CCDC28B-204ENST00000469003 PPP1R11O60927 126 aaPredicted RBP19.26■□□□□ 0.67
CCDC28B-204ENST00000469003 GH1P01241 217 aa19.26■□□□□ 0.67
CCDC28B-204ENST00000469003 CYP2C9P11712 490 aa19.26■□□□□ 0.67
CCDC28B-204ENST00000469003 FOSL2P15408 326 aa19.26■□□□□ 0.67
CCDC28B-204ENST00000469003 EIF2AK2P19525 551 aaKnown RBP19.26■□□□□ 0.67
CCDC28B-204ENST00000469003 PTPN11Q06124 597 aaPredicted RBP19.26■□□□□ 0.67
CCDC28B-204ENST00000469003 ARHGAP1Q07960 439 aa19.26■□□□□ 0.67
CCDC28B-204ENST00000469003 WTAPQ15007 396 aa19.26■□□□□ 0.67
CCDC28B-204ENST00000469003 SART3Q15020 963 aaKnown RBP19.26■□□□□ 0.67
CCDC28B-204ENST00000469003 LY6KQ17RY6 165 aa19.26■□□□□ 0.67
CCDC28B-204ENST00000469003 FAM47CQ5HY64 1035 aa19.26■□□□□ 0.67
CCDC28B-204ENST00000469003 RPUSD2Q8IZ73 545 aaKnown RBP19.26■□□□□ 0.67
CCDC28B-204ENST00000469003 SAMD3Q8N6K7 520 aa19.26■□□□□ 0.67
CCDC28B-204ENST00000469003 SYMPKQ92797 1274 aaKnown RBP19.26■□□□□ 0.67
CCDC28B-204ENST00000469003 MAP4K1Q92918 833 aa19.26■□□□□ 0.67
CCDC28B-204ENST00000469003 PBX4Q9BYU1 374 aa19.26■□□□□ 0.67
CCDC28B-204ENST00000469003 ZNF576Q9H609 170 aa19.26■□□□□ 0.67
CCDC28B-204ENST00000469003 RIOX1Q9H6W3 641 aa19.26■□□□□ 0.67
CCDC28B-204ENST00000469003 PCDHA1Q9Y5I3 950 aa19.26■□□□□ 0.67
CCDC28B-204ENST00000469003 EIF3JO75822 258 aaKnown RBP19.25■□□□□ 0.67
CCDC28B-204ENST00000469003 NR3C2P08235 984 aa19.25■□□□□ 0.67
CCDC28B-204ENST00000469003 TRAF1Q13077 416 aa19.25■□□□□ 0.67
CCDC28B-204ENST00000469003 GRIN2CQ14957 1233 aa19.25■□□□□ 0.67
CCDC28B-204ENST00000469003 SLC35G1Q2M3R5 365 aa19.25■□□□□ 0.67
CCDC28B-204ENST00000469003 STOX1Q6ZVD7 989 aa19.25■□□□□ 0.67
CCDC28B-204ENST00000469003 AFG1LQ8WV93 481 aa19.25■□□□□ 0.67
CCDC28B-204ENST00000469003 SCLYQ96I15 445 aa19.25■□□□□ 0.67
CCDC28B-204ENST00000469003 SENP2Q9HC62 589 aa19.25■□□□□ 0.67
CCDC28B-204ENST00000469003 CXXC1Q9P0U4 656 aaPredicted RBP19.25■□□□□ 0.67
CCDC28B-204ENST00000469003 MMP3P08254 477 aa19.24■□□□□ 0.67
CCDC28B-204ENST00000469003 PBX2P40425 430 aa19.24■□□□□ 0.67
CCDC28B-204ENST00000469003 TROAPQ12815 778 aa19.24■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 62.5 ms