RNA–Protein interactions for RNA: ENST00000464635.1

USP54-209, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 531 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-209ENST00000464635 TEX13BQ9BXU2 312 aa13.51□□□□□ -0.25
USP54-209ENST00000464635 SENP6Q9GZR1 1112 aaPredicted RBP13.51□□□□□ -0.25
USP54-209ENST00000464635 RAVER2Q9HCJ3 691 aaKnown RBP13.51□□□□□ -0.25
USP54-209ENST00000464635 DNM1LO00429 736 aa13.5□□□□□ -0.25
USP54-209ENST00000464635 SEPT4O43236 478 aa13.5□□□□□ -0.25
USP54-209ENST00000464635 PARP1P09874 1014 aaKnown RBP13.5□□□□□ -0.25
USP54-209ENST00000464635 CALML3P27482 149 aa13.5□□□□□ -0.25
USP54-209ENST00000464635 ATN1P54259 1190 aaPredicted RBP13.5□□□□□ -0.25
USP54-209ENST00000464635 KCTD2Q14681 263 aa13.5□□□□□ -0.25
USP54-209ENST00000464635 RILPL1Q5EBL4 403 aa13.5□□□□□ -0.25
USP54-209ENST00000464635 FOXD4L5Q5VV16 416 aaPredicted RBP13.5□□□□□ -0.25
USP54-209ENST00000464635 MYSM1Q5VVJ2 828 aa13.5□□□□□ -0.25
USP54-209ENST00000464635 PRPF38AQ8NAV1 312 aaKnown RBP13.5□□□□□ -0.25
USP54-209ENST00000464635 KCNG4Q8TDN1 519 aa13.5□□□□□ -0.25
USP54-209ENST00000464635 LEO1Q8WVC0 666 aaPredicted RBP13.5□□□□□ -0.25
USP54-209ENST00000464635 FOXD4L4Q8WXT5 416 aaPredicted RBP13.5□□□□□ -0.25
USP54-209ENST00000464635 LENG1Q96BZ8 264 aaPredicted RBP13.5□□□□□ -0.25
USP54-209ENST00000464635 SPATA32Q96LK8 384 aa13.5□□□□□ -0.25
USP54-209ENST00000464635 PHF20Q9BVI0 1012 aa13.5□□□□□ -0.25
USP54-209ENST00000464635 RIOX1Q9H6W3 641 aa13.5□□□□□ -0.25
USP54-209ENST00000464635 EIF4ENIF1Q9NRA8 985 aaKnown RBP13.5□□□□□ -0.25
USP54-209ENST00000464635 SLC5A4Q9NY91 659 aa13.5□□□□□ -0.25
USP54-209ENST00000464635 STX8Q9UNK0 236 aa13.5□□□□□ -0.25
USP54-209ENST00000464635 CNPY2Q9Y2B0 182 aa13.5□□□□□ -0.25
USP54-209ENST00000464635 SZT2Q5T011 3432 aa13.49□□□□□ -0.25
USP54-209ENST00000464635 BMP3P12645 472 aa13.49□□□□□ -0.25
USP54-209ENST00000464635 SCG2P13521 617 aa13.49□□□□□ -0.25
USP54-209ENST00000464635 COPB2P35606 906 aa13.49□□□□□ -0.25
USP54-209ENST00000464635 ZNF445P59923 1031 aa13.49□□□□□ -0.25
USP54-209ENST00000464635 FERMT3Q86UX7 667 aa13.49□□□□□ -0.25
USP54-209ENST00000464635 CCDC144CPQ8IYA2 1237 aa13.49□□□□□ -0.25
USP54-209ENST00000464635 GPT2Q8TD30 523 aa13.49□□□□□ -0.25
USP54-209ENST00000464635 CCDC12Q8WUD4 166 aaPredicted RBP13.49□□□□□ -0.25
USP54-209ENST00000464635 TINF2Q9BSI4 451 aa13.49□□□□□ -0.25
USP54-209ENST00000464635 SLC38A10Q9HBR0 1119 aa13.49□□□□□ -0.25
USP54-209ENST00000464635 BRMS1Q9HCU9 246 aa13.49□□□□□ -0.25
USP54-209ENST00000464635 FEM1BQ9UK73 627 aa13.49□□□□□ -0.25
USP54-209ENST00000464635 V9GY48 417 aaPredicted RBP13.49□□□□□ -0.25
USP54-209ENST00000464635 DNAJC25-GNG10A0A024R161 153 aa13.48□□□□□ -0.25
USP54-209ENST00000464635 A0A1W2PQ27 194 aa13.48□□□□□ -0.25
USP54-209ENST00000464635 A0A1W2PQ64 194 aa13.48□□□□□ -0.25
USP54-209ENST00000464635 A0A1W2PQD8 194 aa13.48□□□□□ -0.25
USP54-209ENST00000464635 ATP2A1O14983 1001 aa13.48□□□□□ -0.25
USP54-209ENST00000464635 ZBED4O75132 1171 aa13.48□□□□□ -0.25
USP54-209ENST00000464635 PPP6R2O75170 966 aa13.48□□□□□ -0.25
USP54-209ENST00000464635 BMP15O95972 392 aa13.48□□□□□ -0.25
USP54-209ENST00000464635 MYCNP04198 464 aaPredicted RBP13.48□□□□□ -0.25
USP54-209ENST00000464635 PDHBP11177 359 aa13.48□□□□□ -0.25
USP54-209ENST00000464635 TRAPPC10P48553 1259 aa13.48□□□□□ -0.25
USP54-209ENST00000464635 RAB11FIP4Q86YS3 637 aa13.48□□□□□ -0.25
USP54-209ENST00000464635 NOSTRINQ8IVI9 506 aa13.48□□□□□ -0.25
USP54-209ENST00000464635 DAGLBQ8NCG7 672 aa13.48□□□□□ -0.25
USP54-209ENST00000464635 CCDC148Q8NFR7 591 aa13.48□□□□□ -0.25
USP54-209ENST00000464635 DCAF4Q8WV16 495 aa13.48□□□□□ -0.25
USP54-209ENST00000464635 LRCH3Q96II8 777 aa13.48□□□□□ -0.25
USP54-209ENST00000464635 FGD4Q96M96 766 aa13.48□□□□□ -0.25
USP54-209ENST00000464635 MTMR7Q9Y216 660 aa13.48□□□□□ -0.25
USP54-209ENST00000464635 DIS3Q9Y2L1 958 aaKnown RBP13.48□□□□□ -0.25
USP54-209ENST00000464635 ZNF536O15090 1300 aa13.47□□□□□ -0.25
USP54-209ENST00000464635 A0A1W2PPC1 479 aa13.47□□□□□ -0.25
USP54-209ENST00000464635 ESYT2A0FGR8 921 aa13.47□□□□□ -0.25
USP54-209ENST00000464635 TMEM232C9JQI7 657 aa13.47□□□□□ -0.25
USP54-209ENST00000464635 KBTBD13C9JR72 458 aa13.47□□□□□ -0.25
USP54-209ENST00000464635 KLRF2D3W0D1 207 aa13.47□□□□□ -0.25
USP54-209ENST00000464635 PLEKHA8P1O95397 391 aa13.47□□□□□ -0.25
USP54-209ENST00000464635 ZNF865P0CJ78 1059 aaPredicted RBP13.47□□□□□ -0.25
USP54-209ENST00000464635 BMP8BP34820 402 aa13.47□□□□□ -0.25
USP54-209ENST00000464635 RTP1P59025 263 aa13.47□□□□□ -0.25
USP54-209ENST00000464635 SNAP25P60880 206 aa13.47□□□□□ -0.25
USP54-209ENST00000464635 LRRC41Q15345 812 aa13.47□□□□□ -0.25
USP54-209ENST00000464635 ADALQ6DHV7 355 aa13.47□□□□□ -0.25
USP54-209ENST00000464635 KCTD1Q719H9 257 aa13.47□□□□□ -0.25
USP54-209ENST00000464635 LINC00301Q8NCQ3 95 aa13.47□□□□□ -0.25
USP54-209ENST00000464635 GMCL1Q96IK5 515 aa13.47□□□□□ -0.25
USP54-209ENST00000464635 HOMER2Q9NSB8 354 aa13.47□□□□□ -0.25
USP54-209ENST00000464635 GOLGA6L4A6NEF3 574 aa13.46□□□□□ -0.25
USP54-209ENST00000464635 FIBPO43427 364 aa13.46□□□□□ -0.25
USP54-209ENST00000464635 PLA2G6O60733 806 aa13.46□□□□□ -0.25
USP54-209ENST00000464635 SNAI1O95863 264 aaPredicted RBP13.46□□□□□ -0.25
USP54-209ENST00000464635 PGK1P00558 417 aa13.46□□□□□ -0.25
USP54-209ENST00000464635 STAT2P52630 851 aa13.46□□□□□ -0.25
USP54-209ENST00000464635 MDM2Q00987 491 aaPredicted RBP13.46□□□□□ -0.25
USP54-209ENST00000464635 ZNF543Q08ER8 600 aa13.46□□□□□ -0.25
USP54-209ENST00000464635 SLC39A14Q15043 492 aa13.46□□□□□ -0.25
USP54-209ENST00000464635 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.46□□□□□ -0.25
USP54-209ENST00000464635 DIS3L2Q8IYB7 885 aaKnown RBP13.46□□□□□ -0.25
USP54-209ENST00000464635 ARRDC4Q8NCT1 418 aa13.46□□□□□ -0.25
USP54-209ENST00000464635 FERMT2Q96AC1 680 aa13.46□□□□□ -0.25
USP54-209ENST00000464635 MTMR8Q96EF0 704 aa13.46□□□□□ -0.25
USP54-209ENST00000464635 AGBL1Q96MI9 1066 aa13.46□□□□□ -0.25
USP54-209ENST00000464635 USP28Q96RU2 1077 aa13.46□□□□□ -0.25
USP54-209ENST00000464635 GLT8D2Q9H1C3 349 aa13.46□□□□□ -0.25
USP54-209ENST00000464635 BARHL2Q9NY43 387 aa13.46□□□□□ -0.25
USP54-209ENST00000464635 NRBP1Q9UHY1 535 aa13.46□□□□□ -0.25
USP54-209ENST00000464635 CEP131Q9UPN4 1083 aa13.46□□□□□ -0.25
USP54-209ENST00000464635 CTDP1Q9Y5B0 961 aaPredicted RBP13.46□□□□□ -0.25
USP54-209ENST00000464635 LAMA3Q16787 3333 aa13.46□□□□□ -0.25
USP54-209ENST00000464635 RARBP10826 455 aa13.45□□□□□ -0.26
USP54-209ENST00000464635 KRT2P35908 639 aa13.45□□□□□ -0.26
USP54-209ENST00000464635 ADCYAP1R1P41586 468 aa13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms