RNA–Protein interactions for RNA: ENST00000463477.5

PTPRD-207, Transcript of protein tyrosine phosphatase, receptor type D, humanhuman

TSL 1 (best) BASIC

Gene PTPRD, Length 1,697 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRD-207ENST00000463477 ERVK-9P63128 1117 aa11.24□□□□□ -0.61
PTPRD-207ENST00000463477 ERVK-24P63145 666 aa11.24□□□□□ -0.61
PTPRD-207ENST00000463477 LRMPQ12912 555 aa11.24□□□□□ -0.61
PTPRD-207ENST00000463477 FAM177A1Q8N128 213 aaPredicted RBP11.24□□□□□ -0.61
PTPRD-207ENST00000463477 C17orf53Q8N3J3 647 aaPredicted RBP11.24□□□□□ -0.61
PTPRD-207ENST00000463477 MB21D1Q8N884 522 aa11.24□□□□□ -0.61
PTPRD-207ENST00000463477 CCDC150Q8NCX0 1101 aa11.24□□□□□ -0.61
PTPRD-207ENST00000463477 CNNM3Q8NE01 707 aa11.24□□□□□ -0.61
PTPRD-207ENST00000463477 NUP133Q8WUM0 1156 aa11.24□□□□□ -0.61
PTPRD-207ENST00000463477 ANKS1AQ92625 1134 aa11.24□□□□□ -0.61
PTPRD-207ENST00000463477 COA7Q96BR5 231 aa11.24□□□□□ -0.61
PTPRD-207ENST00000463477 TANGO6Q9C0B7 1094 aa11.24□□□□□ -0.61
PTPRD-207ENST00000463477 ADAMTS5Q9UNA0 930 aa11.24□□□□□ -0.61
PTPRD-207ENST00000463477 KCNJ14Q9UNX9 436 aa11.24□□□□□ -0.61
PTPRD-207ENST00000463477 CNTNAP5Q8WYK1 1306 aa11.23□□□□□ -0.61
PTPRD-207ENST00000463477 TNPO2O14787 897 aaKnown RBP11.23□□□□□ -0.61
PTPRD-207ENST00000463477 CBFA2T2O43439 604 aa11.23□□□□□ -0.61
PTPRD-207ENST00000463477 CNMDO75829 334 aa11.23□□□□□ -0.61
PTPRD-207ENST00000463477 FLOT1O75955 427 aa11.23□□□□□ -0.61
PTPRD-207ENST00000463477 NDUFB10O96000 172 aa11.23□□□□□ -0.61
PTPRD-207ENST00000463477 KRT2P35908 639 aa11.23□□□□□ -0.61
PTPRD-207ENST00000463477 MYL5Q02045 173 aa11.23□□□□□ -0.61
PTPRD-207ENST00000463477 HSP90AA2PQ14568 343 aaPredicted RBP11.23□□□□□ -0.61
PTPRD-207ENST00000463477 ERCC4Q92889 916 aaPredicted RBP11.23□□□□□ -0.61
PTPRD-207ENST00000463477 FERMT2Q96AC1 680 aa11.23□□□□□ -0.61
PTPRD-207ENST00000463477 CCDC34Q96HJ3 373 aa11.23□□□□□ -0.61
PTPRD-207ENST00000463477 CLIC6Q96NY7 704 aa11.23□□□□□ -0.61
PTPRD-207ENST00000463477 PDCL3Q9H2J4 239 aa11.23□□□□□ -0.61
PTPRD-207ENST00000463477 BRMS1Q9HCU9 246 aa11.23□□□□□ -0.61
PTPRD-207ENST00000463477 BTBD7Q9P203 1132 aa11.23□□□□□ -0.61
PTPRD-207ENST00000463477 GJD2Q9UKL4 321 aa11.23□□□□□ -0.61
PTPRD-207ENST00000463477 STX8Q9UNK0 236 aa11.23□□□□□ -0.61
PTPRD-207ENST00000463477 PTCH2Q9Y6C5 1203 aa11.23□□□□□ -0.61
PTPRD-207ENST00000463477 HTTP42858 3142 aa11.23□□□□□ -0.61
PTPRD-207ENST00000463477 CCDC85CA6NKD9 419 aa11.22□□□□□ -0.61
PTPRD-207ENST00000463477 NMT2O60551 498 aa11.22□□□□□ -0.61
PTPRD-207ENST00000463477 PEX10O60683 326 aa11.22□□□□□ -0.61
PTPRD-207ENST00000463477 ECM2O94769 699 aaPredicted RBP11.22□□□□□ -0.61
PTPRD-207ENST00000463477 MAPK4P31152 587 aa11.22□□□□□ -0.61
PTPRD-207ENST00000463477 TRAPPC10P48553 1259 aa11.22□□□□□ -0.61
PTPRD-207ENST00000463477 SARSP49591 514 aaKnown RBP11.22□□□□□ -0.61
PTPRD-207ENST00000463477 CCNA1P78396 465 aa11.22□□□□□ -0.61
PTPRD-207ENST00000463477 CCZ1BP86790 482 aa11.22□□□□□ -0.61
PTPRD-207ENST00000463477 CCZ1P86791 482 aaPredicted RBP11.22□□□□□ -0.61
PTPRD-207ENST00000463477 NR5A1Q13285 461 aa11.22□□□□□ -0.61
PTPRD-207ENST00000463477 IRF5Q13568 498 aa11.22□□□□□ -0.61
PTPRD-207ENST00000463477 LONRF3Q496Y0 759 aa11.22□□□□□ -0.61
PTPRD-207ENST00000463477 FAM83BQ5T0W9 1011 aa11.22□□□□□ -0.61
PTPRD-207ENST00000463477 SPATA20Q8TB22 786 aa11.22□□□□□ -0.61
PTPRD-207ENST00000463477 TNFRSF25Q93038 417 aa11.22□□□□□ -0.61
PTPRD-207ENST00000463477 ARMC5Q96C12 935 aa11.22□□□□□ -0.61
PTPRD-207ENST00000463477 PAGR1Q9BTK6 254 aa11.22□□□□□ -0.61
PTPRD-207ENST00000463477 HSD3B7Q9H2F3 369 aa11.22□□□□□ -0.61
PTPRD-207ENST00000463477 DACH1Q9UI36 760 aa11.22□□□□□ -0.61
PTPRD-207ENST00000463477 PCDHB6Q9Y5E3 794 aa11.22□□□□□ -0.61
PTPRD-207ENST00000463477 CENPFP49454 3210 aa11.21□□□□□ -0.61
PTPRD-207ENST00000463477 A0A087WWV3 80 aa11.21□□□□□ -0.61
PTPRD-207ENST00000463477 RAD21O60216 631 aa11.21□□□□□ -0.61
PTPRD-207ENST00000463477 FLT3LGP49771 235 aa11.21□□□□□ -0.61
PTPRD-207ENST00000463477 PRKCZQ05513 592 aa11.21□□□□□ -0.61
PTPRD-207ENST00000463477 PNOCQ13519 176 aa11.21□□□□□ -0.61
PTPRD-207ENST00000463477 POSTNQ15063 836 aa11.21□□□□□ -0.61
PTPRD-207ENST00000463477 SLFN13Q68D06 897 aa11.21□□□□□ -0.61
PTPRD-207ENST00000463477 DGKHQ86XP1 1220 aa11.21□□□□□ -0.61
PTPRD-207ENST00000463477 PRPF38AQ8NAV1 312 aaKnown RBP11.21□□□□□ -0.61
PTPRD-207ENST00000463477 MLKLQ8NB16 471 aa11.21□□□□□ -0.61
PTPRD-207ENST00000463477 CTCFLQ8NI51 663 aaPredicted RBP11.21□□□□□ -0.61
PTPRD-207ENST00000463477 RAET1EQ8TD07 263 aa11.21□□□□□ -0.61
PTPRD-207ENST00000463477 SHISA4Q96DD7 197 aa11.21□□□□□ -0.61
PTPRD-207ENST00000463477 GMCL1Q96IK5 515 aa11.21□□□□□ -0.61
PTPRD-207ENST00000463477 XPO4Q9C0E2 1151 aaKnown RBP11.21□□□□□ -0.61
PTPRD-207ENST00000463477 PPP1R9AQ9ULJ8 1098 aa11.21□□□□□ -0.61
PTPRD-207ENST00000463477 GABRQQ9UN88 632 aa11.21□□□□□ -0.61
PTPRD-207ENST00000463477 PAXBP1Q9Y5B6 917 aa11.21□□□□□ -0.61
PTPRD-207ENST00000463477 PCDHA5Q9Y5H7 936 aa11.21□□□□□ -0.61
PTPRD-207ENST00000463477 DOCK3Q8IZD9 2030 aa11.21□□□□□ -0.62
PTPRD-207ENST00000463477 KIF2AO00139 706 aaPredicted RBP11.2□□□□□ -0.62
PTPRD-207ENST00000463477 BIN1O00499 593 aa11.2□□□□□ -0.62
PTPRD-207ENST00000463477 VWA5AO00534 786 aa11.2□□□□□ -0.62
PTPRD-207ENST00000463477 CTIFO43310 598 aaKnown RBP11.2□□□□□ -0.62
PTPRD-207ENST00000463477 PLA2G6O60733 806 aa11.2□□□□□ -0.62
PTPRD-207ENST00000463477 PLEKHA8P1O95397 391 aa11.2□□□□□ -0.62
PTPRD-207ENST00000463477 TUBB4AP04350 444 aa11.2□□□□□ -0.62
PTPRD-207ENST00000463477 TOP1P11387 765 aaKnown RBP11.2□□□□□ -0.62
PTPRD-207ENST00000463477 BMP3P12645 472 aa11.2□□□□□ -0.62
PTPRD-207ENST00000463477 SKILP12757 684 aa11.2□□□□□ -0.62
PTPRD-207ENST00000463477 KIF5BP33176 963 aa11.2□□□□□ -0.62
PTPRD-207ENST00000463477 FANCCQ00597 558 aa11.2□□□□□ -0.62
PTPRD-207ENST00000463477 SYCP1Q15431 976 aa11.2□□□□□ -0.62
PTPRD-207ENST00000463477 NPY5RQ15761 445 aa11.2□□□□□ -0.62
PTPRD-207ENST00000463477 RCSD1Q6JBY9 416 aa11.2□□□□□ -0.62
PTPRD-207ENST00000463477 LRRC47Q8N1G4 583 aaKnown RBP11.2□□□□□ -0.62
PTPRD-207ENST00000463477 OXER1Q8TDS5 423 aa11.2□□□□□ -0.62
PTPRD-207ENST00000463477 PXYLP1Q8TE99 480 aa11.2□□□□□ -0.62
PTPRD-207ENST00000463477 ATG4CQ96DT6 458 aa11.2□□□□□ -0.62
PTPRD-207ENST00000463477 NUP88Q99567 741 aaPredicted RBP11.2□□□□□ -0.62
PTPRD-207ENST00000463477 PYM1Q9BRP8 204 aaKnown RBP11.2□□□□□ -0.62
PTPRD-207ENST00000463477 PORCNQ9H237 461 aa11.2□□□□□ -0.62
PTPRD-207ENST00000463477 SH3GLB2Q9NR46 395 aa11.2□□□□□ -0.62
PTPRD-207ENST00000463477 FBXO28Q9NVF7 368 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms