RNA–Protein interactions for RNA: ENST00000462730.5

HDAC6-213, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 1,999 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-213ENST00000462730 WDR46O15213 610 aaKnown RBP16.31■□□□□ 0.2
HDAC6-213ENST00000462730 ATP1A3P13637 1013 aa16.31■□□□□ 0.2
HDAC6-213ENST00000462730 GCFC2P16383 781 aaKnown RBP16.31■□□□□ 0.2
HDAC6-213ENST00000462730 PTPRAP18433 802 aa16.31■□□□□ 0.2
HDAC6-213ENST00000462730 PLCG1P19174 1290 aa16.31■□□□□ 0.2
HDAC6-213ENST00000462730 FANCCQ00597 558 aa16.31■□□□□ 0.2
HDAC6-213ENST00000462730 SAMD1Q6SPF0 538 aaPredicted RBP16.31■□□□□ 0.2
HDAC6-213ENST00000462730 DLK2Q6UY11 383 aa16.31■□□□□ 0.2
HDAC6-213ENST00000462730 SULF1Q8IWU6 871 aa16.31■□□□□ 0.2
HDAC6-213ENST00000462730 TRMT44Q8IYL2 757 aaKnown RBP16.31■□□□□ 0.2
HDAC6-213ENST00000462730 C17orf53Q8N3J3 647 aaPredicted RBP16.31■□□□□ 0.2
HDAC6-213ENST00000462730 IGSF22Q8N9C0 903 aa16.31■□□□□ 0.2
HDAC6-213ENST00000462730 XPO4Q9C0E2 1151 aaKnown RBP16.31■□□□□ 0.2
HDAC6-213ENST00000462730 RANBP17Q9H2T7 1088 aaKnown RBP16.31■□□□□ 0.2
HDAC6-213ENST00000462730 ZC3H4Q9UPT8 1303 aaKnown RBP16.31■□□□□ 0.2
HDAC6-213ENST00000462730 OTOFQ9HC10 1997 aa16.3■□□□□ 0.2
HDAC6-213ENST00000462730 MEIS2O14770 477 aa16.3■□□□□ 0.2
HDAC6-213ENST00000462730 FXR2P51116 673 aaKnown RBP eCLIP16.3■□□□□ 0.2
HDAC6-213ENST00000462730 AP3B2Q13367 1082 aa16.3■□□□□ 0.2
HDAC6-213ENST00000462730 PRKG1Q13976 671 aa16.3■□□□□ 0.2
HDAC6-213ENST00000462730 NAP1L4Q99733 375 aaKnown RBP16.3■□□□□ 0.2
HDAC6-213ENST00000462730 FANCLQ9NW38 375 aa16.3■□□□□ 0.2
HDAC6-213ENST00000462730 GRIN3BO60391 1043 aa16.29■□□□□ 0.2
HDAC6-213ENST00000462730 RPN1P04843 607 aaKnown RBP16.29■□□□□ 0.2
HDAC6-213ENST00000462730 EPHX2P34913 555 aa16.29■□□□□ 0.2
HDAC6-213ENST00000462730 SPP2Q13103 211 aa16.29■□□□□ 0.2
HDAC6-213ENST00000462730 CCDC144BQ3MJ40 725 aa16.29■□□□□ 0.2
HDAC6-213ENST00000462730 CCDC174Q6PII3 467 aa16.29■□□□□ 0.2
HDAC6-213ENST00000462730 ENOX1Q8TC92 643 aaKnown RBP16.29■□□□□ 0.2
HDAC6-213ENST00000462730 LRRC15Q8TF66 581 aa16.29■□□□□ 0.2
HDAC6-213ENST00000462730 MMTAG2Q9BU76 263 aaKnown RBP16.29■□□□□ 0.2
HDAC6-213ENST00000462730 CUEDC2Q9H467 287 aa16.29■□□□□ 0.2
HDAC6-213ENST00000462730 AS3MTQ9HBK9 375 aa16.29■□□□□ 0.2
HDAC6-213ENST00000462730 LRWD1Q9UFC0 647 aa16.29■□□□□ 0.2
HDAC6-213ENST00000462730 GLTPD2A6NH11 291 aa16.29■□□□□ 0.2
HDAC6-213ENST00000462730 CD44P16070 742 aaKnown RBP16.29■□□□□ 0.2
HDAC6-213ENST00000462730 VCAM1P19320 739 aa16.29■□□□□ 0.2
HDAC6-213ENST00000462730 ERCC5P28715 1186 aaPredicted RBP16.29■□□□□ 0.2
HDAC6-213ENST00000462730 GTF2F1P35269 517 aaKnown RBP eCLIP16.29■□□□□ 0.23e-6■■■■□ 25.9
HDAC6-213ENST00000462730 USP14P54578 494 aa16.29■□□□□ 0.2
HDAC6-213ENST00000462730 CT47A1Q5JQC4 288 aaPredicted RBP16.29■□□□□ 0.2
HDAC6-213ENST00000462730 MCTP2Q6DN12 878 aa16.29■□□□□ 0.2
HDAC6-213ENST00000462730 USP50Q70EL3 339 aaPredicted RBP16.29■□□□□ 0.2
HDAC6-213ENST00000462730 SMAP1Q8IYB5 467 aaPredicted RBP16.29■□□□□ 0.2
HDAC6-213ENST00000462730 SMYD4Q8IYR2 804 aaPredicted RBP16.29■□□□□ 0.2
HDAC6-213ENST00000462730 DDX55Q8NHQ9 600 aaKnown RBP eCLIP16.29■□□□□ 0.2
HDAC6-213ENST00000462730 WDR18Q9BV38 432 aa16.29■□□□□ 0.2
HDAC6-213ENST00000462730 MAGEF1Q9HAY2 307 aa16.29■□□□□ 0.2
HDAC6-213ENST00000462730 RMND1Q9NWS8 449 aa16.29■□□□□ 0.2
HDAC6-213ENST00000462730 SCN4AP35499 1836 aa16.29■□□□□ 0.2
HDAC6-213ENST00000462730 SMCHD1A6NHR9 2005 aa16.28■□□□□ 0.2
HDAC6-213ENST00000462730 OPLAHO14841 1288 aa16.28■□□□□ 0.2
HDAC6-213ENST00000462730 MARCH6O60337 910 aa16.28■□□□□ 0.2
HDAC6-213ENST00000462730 NOL9Q5SY16 702 aaKnown RBP16.28■□□□□ 0.2
HDAC6-213ENST00000462730 KLHL10Q6JEL2 608 aa16.28■□□□□ 0.2
HDAC6-213ENST00000462730 KRT26Q7Z3Y9 468 aa16.28■□□□□ 0.2
HDAC6-213ENST00000462730 ZNF280CQ8ND82 737 aa16.28■□□□□ 0.2
HDAC6-213ENST00000462730 CALML4Q96GE6 196 aa16.28■□□□□ 0.2
HDAC6-213ENST00000462730 P2RX7Q99572 595 aaKnown RBP16.28■□□□□ 0.2
HDAC6-213ENST00000462730 RAB34Q9BZG1 259 aa16.28■□□□□ 0.2
HDAC6-213ENST00000462730 TANGO6Q9C0B7 1094 aa16.28■□□□□ 0.2
HDAC6-213ENST00000462730 EMILIN3Q9NT22 766 aa16.28■□□□□ 0.2
HDAC6-213ENST00000462730 NFE2L3Q9Y4A8 694 aa16.28■□□□□ 0.2
HDAC6-213ENST00000462730 PARP14Q460N5 1801 aa16.28■□□□□ 0.2
HDAC6-213ENST00000462730 WDR90Q96KV7 1748 aa16.28■□□□□ 0.2
HDAC6-213ENST00000462730 SYNRGQ9UMZ2 1314 aa16.28■□□□□ 0.2
HDAC6-213ENST00000462730 PPP1R3GB7ZBB8 358 aa16.27■□□□□ 0.2
HDAC6-213ENST00000462730 SERPINC1P01008 464 aa16.27■□□□□ 0.2
HDAC6-213ENST00000462730 USP11P51784 963 aa16.27■□□□□ 0.2
HDAC6-213ENST00000462730 BACE1P56817 501 aa16.27■□□□□ 0.2
HDAC6-213ENST00000462730 TRAF1Q13077 416 aa16.27■□□□□ 0.2
HDAC6-213ENST00000462730 MED15Q96RN5 788 aa16.27■□□□□ 0.2
HDAC6-213ENST00000462730 SLF1Q9BQI6 1058 aa16.27■□□□□ 0.2
HDAC6-213ENST00000462730 KBTBD4Q9NVX7 518 aa16.27■□□□□ 0.2
HDAC6-213ENST00000462730 ZHX2Q9Y6X8 837 aa16.27■□□□□ 0.2
HDAC6-213ENST00000462730 POTEMA6NI47 508 aa16.27■□□□□ 0.19
HDAC6-213ENST00000462730 SPDYE3A6NKU9 549 aa16.27■□□□□ 0.19
HDAC6-213ENST00000462730 CBFA2T2O43439 604 aa16.27■□□□□ 0.19
HDAC6-213ENST00000462730 USP2O75604 605 aaPredicted RBP16.27■□□□□ 0.19
HDAC6-213ENST00000462730 FOSP01100 380 aaPredicted RBP16.27■□□□□ 0.19
HDAC6-213ENST00000462730 ARHGAP4P98171 946 aa16.27■□□□□ 0.19
HDAC6-213ENST00000462730 KIAA1524Q8TCG1 905 aa16.27■□□□□ 0.19
HDAC6-213ENST00000462730 HAS1Q92839 578 aa16.27■□□□□ 0.19
HDAC6-213ENST00000462730 PYCARDQ9ULZ3 195 aa16.27■□□□□ 0.19
HDAC6-213ENST00000462730 MYL1P05976 194 aa16.26■□□□□ 0.19
HDAC6-213ENST00000462730 HOXA13P31271 388 aaPredicted RBP16.26■□□□□ 0.19
HDAC6-213ENST00000462730 STX17P56962 302 aa16.26■□□□□ 0.19
HDAC6-213ENST00000462730 UBASH3AP57075 661 aa16.26■□□□□ 0.19
HDAC6-213ENST00000462730 GRB10Q13322 594 aa16.26■□□□□ 0.19
HDAC6-213ENST00000462730 PDIA5Q14554 519 aa16.26■□□□□ 0.19
HDAC6-213ENST00000462730 HSP90AA4PQ58FG1 418 aa16.26■□□□□ 0.19
HDAC6-213ENST00000462730 FILIP1Q7Z7B0 1213 aa16.26■□□□□ 0.19
HDAC6-213ENST00000462730 PRPF38AQ8NAV1 312 aaKnown RBP16.26■□□□□ 0.19
HDAC6-213ENST00000462730 GJA10Q969M2 543 aa16.26■□□□□ 0.19
HDAC6-213ENST00000462730 RPAP3Q9H6T3 665 aaPredicted RBP16.26■□□□□ 0.19
HDAC6-213ENST00000462730 CTNND2Q9UQB3 1225 aa16.26■□□□□ 0.19
HDAC6-213ENST00000462730 CYP3A7-CYP3A51PA0A087WV96 503 aa16.26■□□□□ 0.19
HDAC6-213ENST00000462730 FLOT1O75955 427 aa16.26■□□□□ 0.19
HDAC6-213ENST00000462730 CYP3A7P24462 503 aa16.26■□□□□ 0.19
HDAC6-213ENST00000462730 LRMPQ12912 555 aa16.26■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms